Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 119.99690 * 2 1 4 4 H 1.48495 * 109.47306 * 270.00222 * 3 2 1 5 5 H 1.48493 * 109.47256 * 30.00633 * 3 2 1 6 6 H 1.48500 * 109.46798 * 150.00489 * 3 2 1 7 7 C 1.40029 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00203 * 189.53997 * 7 2 1 9 9 C 1.41549 * 120.00235 * 9.54421 * 7 2 1 10 10 C 1.41166 * 120.99611 * 207.96257 * 9 7 2 11 11 C 1.36587 * 119.12741 * 179.97438 * 10 9 7 12 12 N 1.32067 * 121.25716 * 0.02562 * 11 10 9 13 13 C 1.32488 * 122.23329 * 359.97377 * 12 11 10 14 14 N 1.39465 * 119.65299 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99534 * 6.12192 * 14 13 12 16 16 O 1.21585 * 120.00487 * 5.13684 * 15 14 13 17 17 N 1.34783 * 120.00058 * 185.14493 * 15 14 13 18 18 C 1.46927 * 120.62581 * 354.88161 * 17 15 14 19 19 C 1.53188 * 108.77258 * 126.43655 * 18 17 15 20 20 C 1.53044 * 109.31477 * 54.63675 * 19 18 17 21 21 C 1.53042 * 109.53377 * 298.63089 * 20 19 18 22 22 H 1.08998 * 109.49942 * 301.38408 * 21 20 19 23 23 C 1.50700 * 109.49550 * 181.31269 * 21 20 19 24 24 N 1.30498 * 125.64744 * 95.09303 * 23 21 20 25 25 C 1.34127 * 109.26043 * 179.72998 * 24 23 21 26 26 C 1.34676 * 108.01390 * 0.40033 * 25 24 23 27 27 N 1.35041 * 125.65330 * 275.06684 * 23 21 20 28 28 H 0.97000 * 126.39553 * 0.02562 * 27 23 21 29 29 C 1.46927 * 120.60661 * 174.90707 * 17 15 14 30 30 C 1.38647 * 120.70206 * 0.28011 * 13 12 11 31 31 H 0.96997 * 120.00293 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.43522 * 359.97438 * 10 9 7 33 33 H 1.07995 * 119.37315 * 180.02562 * 11 10 9 34 34 H 0.96995 * 120.00134 * 186.11762 * 14 13 12 35 35 H 1.09001 * 109.58807 * 6.64898 * 18 17 15 36 36 H 1.08996 * 109.58581 * 246.22269 * 18 17 15 37 37 H 1.09001 * 109.50080 * 294.68274 * 19 18 17 38 38 H 1.09002 * 109.49505 * 174.58298 * 19 18 17 39 39 H 1.08994 * 109.45945 * 178.61470 * 20 19 18 40 40 H 1.08996 * 109.44877 * 58.64408 * 20 19 18 41 41 H 1.07993 * 125.99359 * 180.24662 * 25 24 23 42 42 H 1.07997 * 126.58737 * 179.86624 * 26 25 24 43 43 H 1.09002 * 109.56031 * 113.75840 * 29 17 15 44 44 H 1.09007 * 109.61919 * 353.33420 * 29 17 15 45 45 H 1.08002 * 120.66076 * 179.72497 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4402 0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 3.0765 -1.2192 0.1545 9 6 1.3146 -2.4300 -0.2043 10 6 1.7965 -3.6406 0.3389 11 6 1.0970 -4.7929 0.1189 12 7 -0.0170 -4.7936 -0.5905 13 6 -0.5157 -3.6882 -1.1239 14 7 -1.6960 -3.7509 -1.8642 15 6 -2.3887 -4.9051 -1.9312 16 8 -2.0369 -5.8645 -1.2725 17 7 -3.4716 -4.9958 -2.7286 18 6 -3.9752 -3.8155 -3.4441 19 6 -4.0847 -4.1522 -4.9345 20 6 -4.9440 -5.4066 -5.1083 21 6 -4.2787 -6.5856 -4.3945 22 1 -3.2820 -6.7445 -4.8061 23 6 -5.1090 -7.8274 -4.5934 24 7 -4.9217 -8.7272 -5.5197 25 6 -5.8434 -9.6931 -5.3911 26 6 -6.6373 -9.3753 -4.3506 27 7 -6.1697 -8.1936 -3.8422 28 1 -6.5326 -7.7096 -3.0839 29 6 -4.1707 -6.2770 -2.8979 30 6 0.1267 -2.4706 -0.9594 31 1 -0.4850 0.8400 0.0004 32 1 2.7062 -3.6553 0.9208 33 1 1.4618 -5.7213 0.5330 34 1 -2.0183 -2.9640 -2.3307 35 1 -3.2849 -2.9831 -3.3073 36 1 -4.9578 -3.5455 -3.0573 37 1 -3.0896 -4.3337 -5.3407 38 1 -4.5473 -3.3184 -5.4628 39 1 -5.0439 -5.6341 -6.1696 40 1 -5.9310 -5.2327 -4.6797 41 1 -5.9346 -10.5704 -6.0142 42 1 -7.4784 -9.9456 -3.9850 43 1 -5.1691 -6.2078 -2.4660 44 1 -3.6095 -7.0686 -2.4012 45 1 -0.2781 -1.5706 -1.3983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871721956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = 54.690268 kcal Electronic energy + Delta-G solvation = -28951.588018 eV Core-core repulsion = 24969.339972 eV Total energy + Delta-G solvation = -3982.248045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.07823 -41.70251 -40.14234 -38.49440 -36.15548 -35.64647 -34.25712 -33.50738 -32.65209 -32.40843 -30.49234 -29.26297 -27.90938 -26.49666 -24.88322 -23.83657 -23.37158 -22.64914 -22.04682 -21.34448 -20.56119 -19.64144 -19.31418 -18.70644 -17.63701 -17.14303 -16.58173 -16.34220 -16.08071 -16.04429 -16.01820 -15.61175 -15.34737 -15.05396 -14.77150 -14.64297 -14.61778 -14.40300 -14.31938 -14.25053 -13.89636 -13.47508 -13.15740 -12.87834 -12.68291 -12.45465 -12.11934 -12.00366 -11.90358 -11.87279 -11.75967 -11.52438 -11.20580 -11.17625 -11.03997 -11.00436 -9.89596 -9.76493 -9.64590 -9.31701 -8.83183 -8.58821 -6.56681 0.82112 1.01089 1.10638 1.42748 1.46633 1.55081 1.58599 2.15458 2.19916 2.22095 2.24597 2.76586 2.86209 3.32249 3.66850 3.72671 3.76050 3.95986 4.05097 4.11107 4.12775 4.29235 4.45491 4.50960 4.57446 4.65506 4.68890 4.71530 4.73391 4.84298 4.91070 4.95322 5.04315 5.09387 5.11839 5.16987 5.24604 5.33954 5.47998 5.50183 5.64519 5.74740 5.81815 5.96203 6.23914 6.48462 6.55712 6.77618 6.81974 6.87050 7.14732 7.53746 7.87691 8.31609 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002350 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.610706 B =11909.660823 C =12773.800353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.484 4.484 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.293 4.293 11 C 0.112 3.888 12 N -0.579 5.579 13 C 0.351 3.649 14 N -0.659 5.659 15 C 0.693 3.307 16 O -0.580 6.580 17 N -0.623 5.623 18 C 0.101 3.899 19 C -0.128 4.128 20 C -0.098 4.098 21 C -0.009 4.009 22 H 0.078 0.922 23 C 0.208 3.792 24 N -0.531 5.531 25 C -0.062 4.062 26 C -0.037 4.037 27 N -0.555 5.555 28 H 0.432 0.568 29 C 0.141 3.859 30 C -0.255 4.255 31 H 0.291 0.709 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.418 0.582 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.183 0.817 42 H 0.216 0.784 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.348 -4.937 -9.990 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.107 3.893 10 C -0.317 4.317 11 C -0.041 4.041 12 N -0.299 5.299 13 C 0.123 3.877 14 N -0.310 5.310 15 C 0.394 3.606 16 O -0.455 6.455 17 N -0.361 5.361 18 C -0.021 4.021 19 C -0.166 4.166 20 C -0.137 4.137 21 C -0.031 4.031 22 H 0.096 0.904 23 C -0.057 4.057 24 N -0.251 5.251 25 C -0.209 4.209 26 C -0.171 4.171 27 N -0.160 5.160 28 H 0.273 0.727 29 C 0.017 3.983 30 C -0.281 4.281 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.164 0.836 34 H 0.258 0.742 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.200 0.800 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.198 -6.335 -10.295 21.021 hybrid contribution 0.164 1.614 1.004 1.908 sum -17.035 -4.721 -9.291 19.970 Atomic orbital electron populations 1.69789 1.08861 1.30765 1.35071 1.26805 0.95710 1.04470 0.90937 0.85076 0.78845 0.75427 0.79610 1.18406 1.19238 1.18427 1.19848 0.96099 0.90821 1.44715 0.89860 1.18021 0.91044 0.93307 0.86946 1.21886 1.05151 0.94534 1.10131 1.21904 0.90166 0.97578 0.94439 1.67293 1.15714 1.29096 1.17797 1.18189 0.86708 0.90299 0.92456 1.42616 1.22801 1.13286 1.52319 1.16149 0.80357 0.83108 0.80938 1.90964 1.69680 1.37797 1.47057 1.47261 1.28885 1.11608 1.48377 1.22029 1.01151 0.86246 0.92680 1.21919 1.00846 0.98907 0.94910 1.21505 0.99211 0.92115 1.00839 1.19882 0.97779 0.89330 0.96059 0.90351 1.22900 0.91933 0.98566 0.92322 1.70167 1.26751 1.04213 1.23977 1.22793 0.95690 1.00862 1.01593 1.23357 1.04287 0.90025 0.99447 1.43277 1.24897 1.20242 1.27556 0.72741 1.21373 0.97286 0.85011 0.94607 1.21526 1.02188 0.95296 1.09076 0.89807 0.86562 0.83587 0.74206 0.90167 0.88274 0.92449 0.87124 0.90893 0.89605 0.79977 0.76742 0.89221 0.91501 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.87 10.81 21.84 0.24 -39.63 16 2 C 0.04 1.75 5.31 85.29 0.45 2.20 16 3 Si 0.99 35.75 29.57 68.60 2.03 37.78 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 5 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.48 -25.02 9.13 23.52 0.21 -24.80 16 8 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 9 C 0.12 6.19 5.58 -21.11 -0.12 6.07 16 10 C -0.29 -14.76 9.85 22.60 0.22 -14.53 16 11 C 0.11 5.57 11.10 84.27 0.94 6.51 16 12 N -0.58 -30.80 7.90 -194.27 -1.54 -32.33 16 13 C 0.35 17.55 7.40 132.76 0.98 18.54 16 14 N -0.66 -26.51 5.30 -322.35 -1.71 -28.22 16 15 C 0.69 27.31 8.25 179.05 1.48 28.79 16 16 O -0.58 -28.51 14.08 -3.98 -0.06 -28.56 16 17 N -0.62 -16.74 2.97 -836.89 -2.49 -19.23 16 18 C 0.10 1.78 6.43 86.36 0.56 2.34 16 19 C -0.13 -1.82 6.08 30.67 0.19 -1.64 16 20 C -0.10 -1.44 5.15 30.62 0.16 -1.28 16 21 C -0.01 -0.19 2.81 -11.46 -0.03 -0.22 16 22 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 23 C 0.21 4.46 6.87 138.13 0.95 5.41 16 24 N -0.53 -13.91 11.25 -188.13 -2.12 -16.03 16 25 C -0.06 -1.23 11.87 83.53 0.99 -0.24 16 26 C -0.04 -0.50 12.04 83.09 1.00 0.50 16 27 N -0.56 -8.15 5.91 -186.27 -1.10 -9.25 16 28 H 0.43 3.77 8.01 -92.71 -0.74 3.02 16 29 C 0.14 3.26 5.53 86.36 0.48 3.74 16 30 C -0.25 -13.20 8.60 23.00 0.20 -13.00 16 31 H 0.29 12.63 8.29 -92.71 -0.77 11.86 16 32 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 33 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 34 H 0.42 13.62 6.15 -92.71 -0.57 13.05 16 35 H 0.08 1.46 5.57 -2.39 -0.01 1.44 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.22 1.07 8.06 -2.91 -0.02 1.04 16 43 H 0.09 1.45 7.19 -2.39 -0.02 1.44 16 44 H 0.07 2.03 7.04 -2.38 -0.02 2.01 16 45 H 0.13 6.46 6.26 -2.91 -0.02 6.44 16 Total: -1.00 -78.11 368.57 1.65 -76.46 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.26 Total: 40.64 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 8.65 Total: 18.38 kcal Atomic # 7 Polarization: -135.98 SS G_CDS: -8.71 Total: -144.69 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.06 Total: -28.56 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -78.11 1.65 -76.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871721956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.146 kcal (2) G-P(sol) polarization free energy of solvation -78.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds