Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48507 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47308 * 299.99897 * 3 2 1 6 6 H 1.48501 * 109.46967 * 60.00395 * 3 2 1 7 7 C 1.40030 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00237 * 184.16766 * 7 2 1 9 9 C 1.41543 * 119.99974 * 4.16568 * 7 2 1 10 10 C 1.41164 * 120.99457 * 145.96518 * 9 7 2 11 11 C 1.36598 * 119.12577 * 179.72955 * 10 9 7 12 12 N 1.32068 * 121.25522 * 359.97383 * 11 10 9 13 13 C 1.32483 * 122.23442 * 0.03014 * 12 11 10 14 14 N 1.39459 * 119.65026 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99903 * 5.41574 * 14 13 12 16 16 O 1.21572 * 119.99677 * 5.59444 * 15 14 13 17 17 N 1.34778 * 119.99967 * 185.59733 * 15 14 13 18 18 C 1.46932 * 120.62836 * 354.54918 * 17 15 14 19 19 C 1.53627 * 108.53760 * 126.37064 * 18 17 15 20 20 C 1.53042 * 109.24072 * 54.85802 * 19 18 17 21 21 N 1.46497 * 109.46067 * 178.48736 * 20 19 18 22 22 C 1.36884 * 126.39937 * 240.06537 * 21 20 19 23 23 C 1.34671 * 106.81693 * 180.02562 * 22 21 20 24 24 N 1.34132 * 108.02260 * 0.02562 * 23 22 21 25 25 C 1.30506 * 109.25351 * 359.72523 * 24 23 22 26 26 C 1.53043 * 109.53801 * 298.51028 * 20 19 18 27 27 C 1.46926 * 120.62845 * 174.83620 * 17 15 14 28 28 C 1.38642 * 120.70184 * 359.97438 * 13 12 11 29 29 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43874 * 359.70137 * 10 9 7 31 31 H 1.07995 * 119.37079 * 179.97438 * 11 10 9 32 32 H 0.96997 * 120.00346 * 185.41142 * 14 13 12 33 33 H 1.08991 * 109.58484 * 246.20057 * 18 17 15 34 34 H 1.09001 * 109.58398 * 6.63760 * 18 17 15 35 35 H 1.08993 * 109.63567 * 294.86630 * 19 18 17 36 36 H 1.08995 * 109.45492 * 174.74037 * 19 18 17 37 37 H 1.09003 * 109.46044 * 58.52639 * 20 19 18 38 38 H 1.07991 * 126.58875 * 359.97069 * 22 21 20 39 39 H 1.08000 * 125.99073 * 180.02562 * 23 22 21 40 40 H 1.08000 * 125.64651 * 180.29350 * 25 24 23 41 41 H 1.09004 * 109.49591 * 301.41039 * 26 20 19 42 42 H 1.08999 * 109.52309 * 181.33655 * 26 20 19 43 43 H 1.08992 * 109.58706 * 353.37183 * 27 17 15 44 44 H 1.09003 * 109.58360 * 113.65690 * 27 17 15 45 45 H 1.08007 * 120.66119 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0854 -1.2140 0.0674 9 6 1.3027 -2.4368 -0.0901 10 6 1.8505 -3.5427 -0.7754 11 6 1.1396 -4.7076 -0.8335 12 7 -0.0459 -4.8162 -0.2616 13 6 -0.6087 -3.8120 0.3942 14 7 -1.8634 -3.9859 0.9775 15 6 -2.4489 -5.1999 0.9672 16 8 -1.8423 -6.1637 0.5415 17 7 -3.7068 -5.3453 1.4287 18 6 -4.4095 -4.2171 2.0551 19 6 -5.7564 -4.0240 1.3420 20 6 -6.5346 -5.3415 1.3685 21 7 -7.8353 -5.1532 0.7213 22 6 -9.0634 -5.3328 1.2987 23 6 -9.9823 -5.0539 0.3545 24 7 -9.3330 -4.7140 -0.7689 25 6 -8.0467 -4.7659 -0.5550 26 6 -5.7442 -6.4179 0.6210 27 6 -4.3992 -6.6367 1.3207 28 6 0.0366 -2.5901 0.5069 29 1 -0.4849 0.8401 0.0004 30 1 2.8188 -3.4686 -1.2479 31 1 1.5548 -5.5560 -1.3571 32 1 -2.3148 -3.2333 1.3906 33 1 -4.5790 -4.4325 3.1100 34 1 -3.8092 -3.3126 1.9564 35 1 -5.5839 -3.7241 0.3084 36 1 -6.3308 -3.2519 1.8538 37 1 -6.6852 -5.6536 2.4020 38 1 -9.2580 -5.6399 2.3155 39 1 -11.0542 -5.0965 0.4798 40 1 -7.2785 -4.5388 -1.2794 41 1 -5.5719 -6.0955 -0.4059 42 1 -6.3094 -7.3499 0.6196 43 1 -3.7922 -7.3291 0.7376 44 1 -4.5656 -7.0465 2.3170 45 1 -0.4226 -1.7720 1.0421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871722057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 88.476203 kcal Electronic energy + Delta-G solvation = -28955.737028 eV Core-core repulsion = 24974.954050 eV Total energy + Delta-G solvation = -3980.782977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33511 -40.37235 -38.62157 -37.37224 -34.45749 -34.37383 -33.77502 -31.47739 -31.01627 -30.50563 -29.50339 -28.50861 -26.03229 -25.35916 -23.78568 -22.65354 -21.95958 -21.61311 -21.27441 -20.33555 -19.26425 -18.47663 -17.67198 -17.39969 -16.11715 -15.54125 -15.46071 -15.43655 -15.05063 -14.78005 -14.52292 -14.22562 -14.12666 -14.03624 -14.00487 -13.65363 -13.42134 -13.26494 -12.95530 -12.68530 -12.60981 -12.41416 -12.19550 -11.72606 -11.46885 -11.37747 -11.22652 -11.16534 -10.93962 -10.34356 -10.15664 -10.15056 -9.83043 -9.77873 -9.64082 -9.43053 -8.71791 -8.69947 -7.94350 -7.80424 -7.08658 -6.72570 -4.67309 1.85345 2.46376 2.61260 2.72054 2.77689 3.00673 3.01076 3.06006 3.19291 3.70113 3.86022 3.93793 4.10447 4.24611 4.44303 4.54407 4.59362 4.62118 4.68746 4.85412 4.96043 5.10200 5.16802 5.26812 5.33713 5.38207 5.47370 5.58676 5.59784 5.62620 5.75475 5.87328 6.09756 6.36594 6.52739 6.53615 6.56460 6.73859 6.90883 6.96807 7.08369 7.13468 7.34397 7.44422 7.85096 7.89882 8.02241 8.23709 8.42211 8.68374 8.75150 9.02367 9.63112 10.12512 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002524 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.957642 B =11089.179869 C =12370.401810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.142 3.858 10 C -0.274 4.274 11 C 0.115 3.885 12 N -0.548 5.548 13 C 0.349 3.651 14 N -0.667 5.667 15 C 0.698 3.302 16 O -0.529 6.529 17 N -0.639 5.639 18 C 0.116 3.884 19 C -0.144 4.144 20 C 0.137 3.863 21 N -0.453 5.453 22 C -0.059 4.059 23 C -0.033 4.033 24 N -0.498 5.498 25 C 0.187 3.813 26 C -0.143 4.143 27 C 0.137 3.863 28 C -0.233 4.233 29 H 0.278 0.722 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.200 0.800 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.883 -5.674 6.817 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.297 4.297 11 C -0.039 4.039 12 N -0.267 5.267 13 C 0.123 3.877 14 N -0.317 5.317 15 C 0.399 3.601 16 O -0.399 6.399 17 N -0.380 5.380 18 C -0.008 4.008 19 C -0.183 4.183 20 C 0.034 3.966 21 N -0.135 5.135 22 C -0.192 4.192 23 C -0.182 4.182 24 N -0.216 5.216 25 C -0.096 4.096 26 C -0.182 4.182 27 C 0.013 3.987 28 C -0.259 4.259 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.189 0.811 39 H 0.184 0.816 40 H 0.217 0.783 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.339 -6.883 5.761 17.772 hybrid contribution 0.752 1.918 0.990 2.285 sum -14.588 -4.965 6.750 16.823 Atomic orbital electron populations 1.69710 1.07443 1.28831 1.37358 1.25904 0.94957 1.01324 0.92113 0.86109 0.80678 0.80513 0.78504 1.18447 1.19871 1.19882 1.19559 0.94820 0.89669 1.45001 0.90084 1.17624 0.90791 0.91914 0.86346 1.21800 1.02884 0.96403 1.08660 1.21494 0.90190 0.95939 0.96250 1.67155 1.13071 1.30808 1.15662 1.18026 0.84592 0.91187 0.93917 1.42759 1.18882 1.10018 1.60004 1.15968 0.80666 0.84194 0.79281 1.91004 1.61798 1.37427 1.49718 1.47435 1.13929 1.11821 1.64840 1.21632 0.92213 0.90301 0.96700 1.22408 0.96246 0.96220 1.03426 1.21514 0.80384 0.96928 0.97745 1.45775 1.06568 1.49703 1.11434 1.22735 0.84201 1.11303 1.00937 1.22303 0.99622 1.06516 0.89711 1.70329 1.03503 1.20411 1.27354 1.24923 0.95147 1.03494 0.86017 1.22357 0.96342 0.98645 1.00855 1.21298 0.91262 0.85450 1.00687 1.21764 0.99690 0.95506 1.08926 0.91062 0.87851 0.85907 0.75951 0.90860 0.89421 0.90107 0.89796 0.87981 0.81112 0.81579 0.78308 0.90302 0.89890 0.87880 0.91575 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.47 10.66 55.55 0.59 -18.88 16 2 C 0.07 1.75 5.44 -17.35 -0.09 1.65 16 3 Si 0.92 17.89 29.56 -169.99 -5.03 12.87 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.59 9.11 -37.65 -0.34 -11.93 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.14 3.65 5.57 -106.55 -0.59 3.06 16 10 C -0.27 -6.58 9.85 -39.06 -0.38 -6.96 16 11 C 0.12 2.71 11.10 -18.04 -0.20 2.51 16 12 N -0.55 -13.72 7.90 -12.76 -0.10 -13.83 16 13 C 0.35 8.24 7.41 -154.69 -1.15 7.10 16 14 N -0.67 -12.58 5.30 -15.87 -0.08 -12.67 16 15 C 0.70 12.67 8.25 -86.91 -0.72 11.95 16 16 O -0.53 -11.90 14.08 5.30 0.07 -11.82 16 17 N -0.64 -7.90 2.97 -178.23 -0.53 -8.43 16 18 C 0.12 1.01 6.46 -3.48 -0.02 0.99 16 19 C -0.14 -1.09 5.41 -26.38 -0.14 -1.23 16 20 C 0.14 0.98 2.82 -67.89 -0.19 0.78 16 21 N -0.45 -3.94 2.62 -111.41 -0.29 -4.23 16 22 C -0.06 -0.49 11.54 -16.56 -0.19 -0.68 16 23 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 24 N -0.50 -6.28 11.25 -14.66 -0.16 -6.44 16 25 C 0.19 1.98 11.61 -90.37 -1.05 0.93 16 26 C -0.14 -1.15 5.40 -26.61 -0.14 -1.30 16 27 C 0.14 1.38 6.42 -3.71 -0.02 1.36 16 28 C -0.23 -5.76 8.62 -38.46 -0.33 -6.09 16 29 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 30 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 32 H 0.40 6.26 6.16 -40.82 -0.25 6.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.79 5.57 -51.93 -0.29 0.50 16 35 H 0.08 0.73 7.98 -51.93 -0.41 0.31 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.20 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.08 0.75 7.99 -51.93 -0.41 0.34 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 1.28 7.04 -51.93 -0.37 0.92 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.14 3.32 6.22 -52.48 -0.33 2.99 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -33.34 370.55 -11.56 -44.90 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.83 Total: 11.36 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -5.79 Total: 1.58 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.58 Total: -64.47 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.34 -11.56 -44.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.375 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds