Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48507 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47308 * 299.99897 * 3 2 1 6 6 H 1.48501 * 109.46967 * 60.00395 * 3 2 1 7 7 C 1.40030 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00237 * 184.16766 * 7 2 1 9 9 C 1.41543 * 119.99974 * 4.16568 * 7 2 1 10 10 C 1.41164 * 120.99457 * 145.96518 * 9 7 2 11 11 C 1.36598 * 119.12577 * 179.72955 * 10 9 7 12 12 N 1.32068 * 121.25522 * 359.97383 * 11 10 9 13 13 C 1.32483 * 122.23442 * 0.03014 * 12 11 10 14 14 N 1.39459 * 119.65026 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99903 * 5.41574 * 14 13 12 16 16 O 1.21572 * 119.99677 * 5.59444 * 15 14 13 17 17 N 1.34778 * 119.99967 * 185.59733 * 15 14 13 18 18 C 1.46932 * 120.62836 * 354.54918 * 17 15 14 19 19 C 1.53627 * 108.53760 * 126.37064 * 18 17 15 20 20 C 1.53042 * 109.24072 * 54.85802 * 19 18 17 21 21 N 1.46497 * 109.46067 * 178.48736 * 20 19 18 22 22 C 1.36884 * 126.39937 * 240.06537 * 21 20 19 23 23 C 1.34671 * 106.81693 * 180.02562 * 22 21 20 24 24 N 1.34132 * 108.02260 * 0.02562 * 23 22 21 25 25 C 1.30506 * 109.25351 * 359.72523 * 24 23 22 26 26 C 1.53043 * 109.53801 * 298.51028 * 20 19 18 27 27 C 1.46926 * 120.62845 * 174.83620 * 17 15 14 28 28 C 1.38642 * 120.70184 * 359.97438 * 13 12 11 29 29 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43874 * 359.70137 * 10 9 7 31 31 H 1.07995 * 119.37079 * 179.97438 * 11 10 9 32 32 H 0.96997 * 120.00346 * 185.41142 * 14 13 12 33 33 H 1.08991 * 109.58484 * 246.20057 * 18 17 15 34 34 H 1.09001 * 109.58398 * 6.63760 * 18 17 15 35 35 H 1.08993 * 109.63567 * 294.86630 * 19 18 17 36 36 H 1.08995 * 109.45492 * 174.74037 * 19 18 17 37 37 H 1.09003 * 109.46044 * 58.52639 * 20 19 18 38 38 H 1.07991 * 126.58875 * 359.97069 * 22 21 20 39 39 H 1.08000 * 125.99073 * 180.02562 * 23 22 21 40 40 H 1.08000 * 125.64651 * 180.29350 * 25 24 23 41 41 H 1.09004 * 109.49591 * 301.41039 * 26 20 19 42 42 H 1.08999 * 109.52309 * 181.33655 * 26 20 19 43 43 H 1.08992 * 109.58706 * 353.37183 * 27 17 15 44 44 H 1.09003 * 109.58360 * 113.65690 * 27 17 15 45 45 H 1.08007 * 120.66119 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0854 -1.2140 0.0674 9 6 1.3027 -2.4368 -0.0901 10 6 1.8505 -3.5427 -0.7754 11 6 1.1396 -4.7076 -0.8335 12 7 -0.0459 -4.8162 -0.2616 13 6 -0.6087 -3.8120 0.3942 14 7 -1.8634 -3.9859 0.9775 15 6 -2.4489 -5.1999 0.9672 16 8 -1.8423 -6.1637 0.5415 17 7 -3.7068 -5.3453 1.4287 18 6 -4.4095 -4.2171 2.0551 19 6 -5.7564 -4.0240 1.3420 20 6 -6.5346 -5.3415 1.3685 21 7 -7.8353 -5.1532 0.7213 22 6 -9.0634 -5.3328 1.2987 23 6 -9.9823 -5.0539 0.3545 24 7 -9.3330 -4.7140 -0.7689 25 6 -8.0467 -4.7659 -0.5550 26 6 -5.7442 -6.4179 0.6210 27 6 -4.3992 -6.6367 1.3207 28 6 0.0366 -2.5901 0.5069 29 1 -0.4849 0.8401 0.0004 30 1 2.8188 -3.4686 -1.2479 31 1 1.5548 -5.5560 -1.3571 32 1 -2.3148 -3.2333 1.3906 33 1 -4.5790 -4.4325 3.1100 34 1 -3.8092 -3.3126 1.9564 35 1 -5.5839 -3.7241 0.3084 36 1 -6.3308 -3.2519 1.8538 37 1 -6.6852 -5.6536 2.4020 38 1 -9.2580 -5.6399 2.3155 39 1 -11.0542 -5.0965 0.4798 40 1 -7.2785 -4.5388 -1.2794 41 1 -5.5719 -6.0955 -0.4059 42 1 -6.3094 -7.3499 0.6196 43 1 -3.7922 -7.3291 0.7376 44 1 -4.5656 -7.0465 2.3170 45 1 -0.4226 -1.7720 1.0421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871722057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 70.358240 kcal Electronic energy + Delta-G solvation = -28956.522681 eV Core-core repulsion = 24974.954050 eV Total energy + Delta-G solvation = -3981.568631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.04411 -41.68933 -40.14954 -38.58033 -36.13529 -35.65175 -35.15419 -32.48628 -32.25245 -31.83874 -30.36832 -30.00150 -27.89631 -26.28411 -24.59934 -23.86777 -23.63081 -22.75923 -22.10931 -21.40716 -20.43537 -19.69344 -19.26880 -18.22647 -17.65155 -17.12367 -16.64945 -16.34916 -16.14584 -16.04402 -15.88247 -15.55284 -15.28005 -15.04414 -14.84160 -14.64822 -14.53255 -14.42746 -14.29670 -14.23704 -13.87694 -13.47001 -13.18247 -13.03120 -12.87443 -12.67791 -12.43799 -12.15442 -12.07682 -11.87762 -11.83779 -11.48680 -11.22119 -11.19314 -10.91296 -10.52567 -9.85879 -9.74631 -9.65102 -9.41054 -8.84292 -8.51819 -6.58324 0.81137 1.01096 1.16456 1.42288 1.50229 1.53741 1.57547 1.81711 2.22119 2.24819 2.25638 2.77487 2.87451 3.40758 3.58985 3.71858 3.76936 3.86431 3.88532 4.02355 4.07603 4.18729 4.25232 4.45098 4.47884 4.62580 4.64455 4.70518 4.74322 4.79522 4.82784 4.86639 4.92424 4.94677 5.06198 5.10755 5.28306 5.41937 5.47938 5.52724 5.65111 5.75608 5.87902 6.00346 6.24301 6.27582 6.56330 6.77836 6.82502 6.88569 7.17574 7.54622 7.86037 8.34975 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002524 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.957642 B =11089.179869 C =12370.401810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.487 4.487 8 H 0.081 0.919 9 C 0.112 3.888 10 C -0.286 4.286 11 C 0.109 3.891 12 N -0.572 5.572 13 C 0.349 3.651 14 N -0.661 5.661 15 C 0.693 3.307 16 O -0.578 6.578 17 N -0.627 5.627 18 C 0.112 3.888 19 C -0.136 4.136 20 C 0.143 3.857 21 N -0.448 5.448 22 C -0.041 4.041 23 C -0.064 4.064 24 N -0.539 5.539 25 C 0.170 3.830 26 C -0.132 4.132 27 C 0.136 3.864 28 C -0.249 4.249 29 H 0.288 0.712 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.417 0.583 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.209 0.791 39 H 0.180 0.820 40 H 0.203 0.797 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.209 -5.087 8.811 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.310 4.310 11 C -0.044 4.044 12 N -0.292 5.292 13 C 0.121 3.879 14 N -0.312 5.312 15 C 0.394 3.606 16 O -0.453 6.453 17 N -0.366 5.366 18 C -0.011 4.011 19 C -0.175 4.175 20 C 0.041 3.959 21 N -0.130 5.130 22 C -0.174 4.174 23 C -0.210 4.210 24 N -0.258 5.258 25 C -0.113 4.113 26 C -0.171 4.171 27 C 0.013 3.987 28 C -0.275 4.275 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.166 0.834 32 H 0.257 0.743 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.153 0.847 38 H 0.226 0.774 39 H 0.197 0.803 40 H 0.220 0.780 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.741 -6.295 7.790 19.508 hybrid contribution 1.054 1.687 0.390 2.027 sum -15.688 -4.608 8.179 18.282 Atomic orbital electron populations 1.69752 1.08650 1.30317 1.36665 1.26760 0.95821 1.04296 0.91119 0.85019 0.79165 0.75862 0.78820 1.18310 1.19432 1.18721 1.19810 0.95072 0.90526 1.46459 0.90053 1.18055 0.91711 0.92847 0.86998 1.21971 1.03645 0.96326 1.09069 1.21940 0.89930 0.96669 0.95864 1.67296 1.13815 1.31477 1.16604 1.18228 0.85862 0.90587 0.93218 1.42654 1.17653 1.11210 1.59704 1.16164 0.82164 0.83099 0.79126 1.90964 1.63684 1.38703 1.51961 1.47440 1.11987 1.13817 1.63406 1.21929 0.92103 0.88722 0.98338 1.22324 0.95743 0.97095 1.02370 1.21586 0.79407 0.96016 0.98913 1.45827 1.07275 1.49038 1.10816 1.23276 0.83275 1.09006 1.01890 1.22715 1.00867 1.07696 0.89766 1.70269 1.04694 1.21693 1.29130 1.25014 0.94847 1.04284 0.87152 1.22227 0.95496 0.99798 0.99607 1.21473 0.91214 0.83818 1.02238 1.21726 1.00012 0.95902 1.09844 0.90105 0.86474 0.83389 0.74294 0.87379 0.89962 0.92053 0.88081 0.84671 0.77420 0.80252 0.78023 0.92400 0.88440 0.90727 0.88320 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.99 10.66 21.84 0.23 -39.76 16 2 C 0.03 1.64 5.44 85.29 0.46 2.11 16 3 Si 0.99 36.08 29.56 68.60 2.03 38.10 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 7 C -0.49 -25.02 9.11 23.52 0.21 -24.80 16 8 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 9 C 0.11 5.94 5.57 -21.12 -0.12 5.82 16 10 C -0.29 -14.07 9.85 22.60 0.22 -13.85 16 11 C 0.11 5.24 11.10 84.27 0.94 6.18 16 12 N -0.57 -29.35 7.90 -194.27 -1.53 -30.88 16 13 C 0.35 16.88 7.41 132.76 0.98 17.87 16 14 N -0.66 -25.24 5.30 -322.37 -1.71 -26.95 16 15 C 0.69 25.31 8.25 179.05 1.48 26.79 16 16 O -0.58 -26.68 14.08 -3.94 -0.06 -26.73 16 17 N -0.63 -14.65 2.97 -836.08 -2.48 -17.13 16 18 C 0.11 1.65 6.46 86.51 0.56 2.21 16 19 C -0.14 -1.70 5.41 30.82 0.17 -1.53 16 20 C 0.14 1.54 2.82 45.02 0.13 1.66 16 21 N -0.45 -6.62 2.62 -506.40 -1.32 -7.94 16 22 C -0.04 -0.55 11.54 83.09 0.96 0.41 16 23 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 24 N -0.54 -13.39 11.25 -200.30 -2.25 -15.64 16 25 C 0.17 3.47 11.61 180.26 2.09 5.57 16 26 C -0.13 -1.86 5.40 30.67 0.17 -1.70 16 27 C 0.14 2.49 6.42 86.36 0.55 3.04 16 28 C -0.25 -12.64 8.62 23.00 0.20 -12.44 16 29 H 0.29 12.50 8.29 -92.71 -0.77 11.73 16 30 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16 31 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 32 H 0.42 12.94 6.16 -92.71 -0.57 12.37 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.33 5.57 -2.39 -0.01 1.32 16 35 H 0.06 1.04 7.98 -2.39 -0.02 1.02 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.14 0.70 8.08 -2.39 -0.02 0.68 16 38 H 0.21 1.11 8.06 -2.92 -0.02 1.09 16 39 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.20 3.71 8.06 -2.91 -0.02 3.68 16 41 H 0.06 1.08 7.99 -2.39 -0.02 1.06 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.86 7.04 -2.39 -0.02 1.84 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.13 6.61 6.22 -2.91 -0.02 6.59 16 Total: -1.00 -75.49 370.55 3.35 -72.14 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.46 Total: 37.69 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 9.99 Total: 17.11 kcal Atomic # 7 Polarization: -129.23 SS G_CDS: -9.07 Total: -138.30 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.06 Total: -26.73 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.10 kcal Total: -75.49 3.35 -72.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.497 kcal (2) G-P(sol) polarization free energy of solvation -75.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds