Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86805 * 119.99846 * 2 1 4 4 H 1.48494 * 109.46793 * 265.00005 * 3 2 1 5 5 H 1.48501 * 109.47073 * 24.99711 * 3 2 1 6 6 H 1.48498 * 109.47219 * 144.99572 * 3 2 1 7 7 C 1.40027 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00192 * 143.08345 * 7 2 1 9 9 C 1.41544 * 119.99990 * 323.08941 * 7 2 1 10 10 C 1.41167 * 121.00086 * 352.06082 * 9 7 2 11 11 C 1.36581 * 119.12947 * 180.23722 * 10 9 7 12 12 N 1.32069 * 121.26196 * 359.46502 * 11 10 9 13 13 C 1.32488 * 122.22726 * 0.27294 * 12 11 10 14 14 N 1.39463 * 119.64874 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00170 * 354.85193 * 14 13 12 16 16 O 1.21583 * 119.99642 * 5.76310 * 15 14 13 17 17 N 1.34772 * 120.00206 * 185.76196 * 15 14 13 18 18 C 1.46919 * 120.63124 * 4.91265 * 17 15 14 19 19 C 1.53193 * 108.77933 * 233.58568 * 18 17 15 20 20 C 1.53034 * 109.31452 * 305.36877 * 19 18 17 21 21 C 1.53040 * 109.53869 * 61.36101 * 20 19 18 22 22 H 1.08998 * 109.50036 * 58.58924 * 21 20 19 23 23 N 1.46499 * 109.49802 * 178.68796 * 21 20 19 24 24 C 1.36885 * 126.39723 * 239.71683 * 23 21 20 25 25 C 1.34664 * 106.82056 * 179.84110 * 24 23 21 26 26 N 1.34129 * 108.01787 * 0.42002 * 25 24 23 27 27 C 1.30500 * 109.25788 * 359.72831 * 26 25 24 28 28 C 1.46922 * 120.62898 * 184.63648 * 17 15 14 29 29 C 1.38647 * 120.70541 * 0.02562 * 13 12 11 30 30 H 0.96996 * 119.99855 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.42930 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.37131 * 179.74083 * 11 10 9 33 33 H 0.97004 * 119.99527 * 174.84969 * 14 13 12 34 34 H 1.09001 * 109.58664 * 353.37637 * 18 17 15 35 35 H 1.09000 * 109.59131 * 113.65622 * 18 17 15 36 36 H 1.09010 * 109.49449 * 65.31678 * 19 18 17 37 37 H 1.09002 * 109.49829 * 185.40952 * 19 18 17 38 38 H 1.09001 * 109.46255 * 181.38263 * 20 19 18 39 39 H 1.09002 * 109.45800 * 301.35332 * 20 19 18 40 40 H 1.07998 * 126.58630 * 359.97403 * 24 23 21 41 41 H 1.07997 * 125.99365 * 180.11767 * 25 24 23 42 42 H 1.07997 * 125.65347 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.59023 * 246.20072 * 28 17 15 44 44 H 1.08998 * 109.59327 * 6.62663 * 28 17 15 45 45 H 1.07998 * 120.66418 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5946 1.9854 -1.3947 5 1 1.3900 2.6809 0.5916 6 1 3.4821 1.4731 0.8031 7 6 2.0077 -1.2126 0.0005 8 1 2.9253 -1.3066 -0.5612 9 6 1.5128 -2.3153 0.7372 10 6 0.4116 -2.1721 1.6088 11 6 -0.0314 -3.2606 2.3048 12 7 0.5438 -4.4416 2.1688 13 6 1.5764 -4.6358 1.3619 14 7 2.1430 -5.9061 1.2599 15 6 1.7085 -6.9036 2.0553 16 8 0.7539 -6.7256 2.7870 17 7 2.3322 -8.0982 2.0397 18 6 3.5505 -8.2963 1.2428 19 6 3.3496 -9.5084 0.3278 20 6 2.9475 -10.7193 1.1729 21 6 1.6255 -10.4288 1.8870 22 1 0.8553 -10.2038 1.1494 23 7 1.2256 -11.6001 2.6709 24 6 0.0693 -12.3182 2.5259 25 6 0.1072 -13.3066 3.4398 26 7 1.2511 -13.1894 4.1303 27 6 1.9261 -12.1695 3.6752 28 6 1.8101 -9.2255 2.8241 29 6 2.1006 -3.5895 0.6184 30 1 -0.4850 0.8400 0.0004 31 1 -0.0715 -1.2134 1.7269 32 1 -0.8710 -3.1544 2.9759 33 1 2.8497 -6.0717 0.6164 34 1 3.7398 -7.4094 0.6381 35 1 4.3967 -8.4732 1.9066 36 1 2.5630 -9.2921 -0.3952 37 1 4.2791 -9.7247 -0.1989 38 1 2.8279 -11.5893 0.5271 39 1 3.7231 -10.9198 1.9121 40 1 -0.7205 -12.1297 1.8139 41 1 -0.6526 -14.0585 3.5934 42 1 2.8861 -11.8362 4.0409 43 1 2.5167 -9.4792 3.6143 44 1 0.8507 -8.9520 3.2632 45 1 2.9421 -3.7486 -0.0395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871722472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 88.516370 kcal Electronic energy + Delta-G solvation = -28754.325967 eV Core-core repulsion = 24773.544731 eV Total energy + Delta-G solvation = -3980.781235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32754 -40.41567 -38.58231 -37.34566 -34.70899 -34.41413 -33.56460 -32.40492 -30.78046 -30.25216 -29.30126 -28.39337 -26.11393 -25.59688 -24.06191 -22.38187 -21.81116 -21.73403 -21.34391 -20.33462 -19.24828 -18.44934 -17.96180 -17.25939 -16.23112 -15.61973 -15.45863 -15.26998 -15.09635 -14.90066 -14.53408 -14.29116 -14.25497 -14.06113 -13.92968 -13.65318 -13.55093 -13.32523 -13.10225 -12.90090 -12.60856 -12.27819 -12.06797 -11.58068 -11.50493 -11.44197 -11.33091 -11.25397 -10.95632 -10.52854 -10.16887 -10.14861 -9.90686 -9.81271 -9.66132 -9.17989 -8.74782 -8.67823 -8.21805 -7.71802 -7.14189 -7.03775 -4.63666 1.86129 2.28686 2.69132 2.70367 2.84267 2.94651 2.97488 3.02013 3.24416 3.65881 3.73737 3.94796 4.09326 4.27177 4.37637 4.45652 4.48556 4.54565 4.65991 4.76327 4.97374 5.11206 5.18721 5.28430 5.30576 5.39929 5.46010 5.52073 5.57817 5.67963 5.75089 5.89697 6.09102 6.29066 6.48941 6.55145 6.56590 6.74880 6.79062 6.97998 6.99673 7.11099 7.39029 7.49557 7.78722 7.89909 7.95261 8.16877 8.40891 8.65152 8.69455 8.98651 9.74223 9.78793 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028918 B = 0.002101 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.016495 B =13323.433944 C =13931.701076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.091 3.909 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.456 4.456 8 H 0.085 0.915 9 C 0.143 3.857 10 C -0.252 4.252 11 C 0.113 3.887 12 N -0.566 5.566 13 C 0.372 3.628 14 N -0.667 5.667 15 C 0.696 3.304 16 O -0.523 6.523 17 N -0.635 5.635 18 C 0.107 3.893 19 C -0.132 4.132 20 C -0.125 4.125 21 C 0.119 3.881 22 H 0.105 0.895 23 N -0.450 5.450 24 C -0.052 4.052 25 C -0.033 4.033 26 N -0.497 5.497 27 C 0.182 3.818 28 C 0.129 3.871 29 C -0.322 4.322 30 H 0.288 0.712 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.401 0.599 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.201 0.799 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.690 -16.655 -1.260 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.103 0.897 9 C 0.135 3.865 10 C -0.275 4.275 11 C -0.037 4.037 12 N -0.286 5.286 13 C 0.144 3.856 14 N -0.317 5.317 15 C 0.397 3.603 16 O -0.392 6.392 17 N -0.376 5.376 18 C -0.016 4.016 19 C -0.171 4.171 20 C -0.163 4.163 21 C 0.015 3.985 22 H 0.123 0.877 23 N -0.133 5.133 24 C -0.185 4.185 25 C -0.181 4.181 26 N -0.215 5.215 27 C -0.100 4.100 28 C 0.004 3.996 29 C -0.349 4.349 30 H 0.099 0.901 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.238 0.762 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.190 0.810 41 H 0.185 0.815 42 H 0.217 0.783 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.663 -17.503 0.360 18.400 hybrid contribution 0.772 1.924 -1.661 2.657 sum 6.435 -15.579 -1.301 16.906 Atomic orbital electron populations 1.69920 1.08480 1.30503 1.28070 1.26079 0.94286 1.02085 0.90990 0.86438 0.81323 0.80023 0.79796 1.19047 1.19795 1.17969 1.19522 1.07978 0.94477 1.26450 0.89690 1.17455 0.89235 0.90533 0.89272 1.21886 1.02824 0.99758 1.03066 1.21529 0.97168 0.88055 0.96912 1.67204 1.12193 1.25160 1.24022 1.17748 0.91795 0.82152 0.93947 1.42753 1.40746 1.08551 1.39673 1.15968 0.82816 0.79729 0.81751 1.91039 1.27055 1.79511 1.41623 1.47294 1.28542 1.10328 1.51440 1.21689 0.87451 0.98560 0.93941 1.21930 1.03008 0.94073 0.98094 1.21879 0.95671 0.99055 0.99699 1.22027 0.98907 0.83759 0.93827 0.87688 1.45599 1.16487 1.23438 1.27776 1.22790 0.92170 0.97501 1.06046 1.22287 0.97652 1.01116 0.97014 1.70302 1.06225 1.17778 1.27174 1.24880 1.00278 0.93887 0.90994 1.21638 1.02150 0.83715 0.92097 1.20903 1.09132 0.93036 1.11822 0.90125 0.85984 0.86232 0.76185 0.89869 0.90943 0.90790 0.89601 0.90732 0.90647 0.81017 0.81456 0.78263 0.91083 0.87914 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.99 11.29 55.55 0.63 -17.36 16 2 C 0.09 2.13 4.90 -17.34 -0.08 2.05 16 3 Si 0.90 17.14 29.68 -169.99 -5.05 12.09 16 4 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.46 -11.39 9.01 -37.65 -0.34 -11.72 16 8 H 0.09 2.02 8.05 -52.49 -0.42 1.59 16 9 C 0.14 3.70 5.71 -106.55 -0.61 3.09 16 10 C -0.25 -6.51 8.95 -39.07 -0.35 -6.86 16 11 C 0.11 2.84 11.10 -18.05 -0.20 2.64 16 12 N -0.57 -14.56 7.86 -12.76 -0.10 -14.66 16 13 C 0.37 8.67 7.42 -154.68 -1.15 7.52 16 14 N -0.67 -12.12 5.28 -15.86 -0.08 -12.20 16 15 C 0.70 12.56 8.26 -86.92 -0.72 11.84 16 16 O -0.52 -11.97 14.04 5.29 0.07 -11.89 16 17 N -0.63 -7.76 2.97 -178.24 -0.53 -8.29 16 18 C 0.11 0.86 6.43 -3.71 -0.02 0.84 16 19 C -0.13 -0.79 6.08 -26.61 -0.16 -0.95 16 20 C -0.12 -0.77 5.20 -26.69 -0.14 -0.91 16 21 C 0.12 1.00 3.02 -67.58 -0.20 0.80 16 22 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 23 N -0.45 -4.20 2.62 -111.09 -0.29 -4.49 16 24 C -0.05 -0.50 11.54 -16.56 -0.19 -0.69 16 25 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 26 N -0.50 -6.12 11.25 -14.67 -0.17 -6.28 16 27 C 0.18 1.81 11.49 -90.38 -1.04 0.77 16 28 C 0.13 1.40 5.83 -3.48 -0.02 1.38 16 29 C -0.32 -7.63 9.74 -38.45 -0.37 -8.01 16 30 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 31 H 0.12 3.16 5.93 -52.49 -0.31 2.85 16 32 H 0.12 2.72 8.06 -52.48 -0.42 2.30 16 33 H 0.40 5.61 6.19 -40.82 -0.25 5.36 16 34 H 0.08 0.64 5.58 -51.93 -0.29 0.35 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.41 7.98 -51.93 -0.41 0.00 16 40 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.20 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 44 H 0.10 1.44 7.03 -51.93 -0.37 1.07 16 45 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -33.76 370.68 -11.56 -45.32 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.82 Total: 10.96 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -5.81 Total: 1.22 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.54 Total: -63.29 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.05 Total: 12.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.76 -11.56 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.841 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds