Wall clock time and date at job start Sat Apr 11 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86805 * 119.99846 * 2 1 4 4 H 1.48494 * 109.46793 * 265.00005 * 3 2 1 5 5 H 1.48501 * 109.47073 * 24.99711 * 3 2 1 6 6 H 1.48498 * 109.47219 * 144.99572 * 3 2 1 7 7 C 1.40027 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00192 * 143.08345 * 7 2 1 9 9 C 1.41544 * 119.99990 * 323.08941 * 7 2 1 10 10 C 1.41167 * 121.00086 * 352.06082 * 9 7 2 11 11 C 1.36581 * 119.12947 * 180.23722 * 10 9 7 12 12 N 1.32069 * 121.26196 * 359.46502 * 11 10 9 13 13 C 1.32488 * 122.22726 * 0.27294 * 12 11 10 14 14 N 1.39463 * 119.64874 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00170 * 354.85193 * 14 13 12 16 16 O 1.21583 * 119.99642 * 5.76310 * 15 14 13 17 17 N 1.34772 * 120.00206 * 185.76196 * 15 14 13 18 18 C 1.46919 * 120.63124 * 4.91265 * 17 15 14 19 19 C 1.53193 * 108.77933 * 233.58568 * 18 17 15 20 20 C 1.53034 * 109.31452 * 305.36877 * 19 18 17 21 21 C 1.53040 * 109.53869 * 61.36101 * 20 19 18 22 22 H 1.08998 * 109.50036 * 58.58924 * 21 20 19 23 23 N 1.46499 * 109.49802 * 178.68796 * 21 20 19 24 24 C 1.36885 * 126.39723 * 239.71683 * 23 21 20 25 25 C 1.34664 * 106.82056 * 179.84110 * 24 23 21 26 26 N 1.34129 * 108.01787 * 0.42002 * 25 24 23 27 27 C 1.30500 * 109.25788 * 359.72831 * 26 25 24 28 28 C 1.46922 * 120.62898 * 184.63648 * 17 15 14 29 29 C 1.38647 * 120.70541 * 0.02562 * 13 12 11 30 30 H 0.96996 * 119.99855 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.42930 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.37131 * 179.74083 * 11 10 9 33 33 H 0.97004 * 119.99527 * 174.84969 * 14 13 12 34 34 H 1.09001 * 109.58664 * 353.37637 * 18 17 15 35 35 H 1.09000 * 109.59131 * 113.65622 * 18 17 15 36 36 H 1.09010 * 109.49449 * 65.31678 * 19 18 17 37 37 H 1.09002 * 109.49829 * 185.40952 * 19 18 17 38 38 H 1.09001 * 109.46255 * 181.38263 * 20 19 18 39 39 H 1.09002 * 109.45800 * 301.35332 * 20 19 18 40 40 H 1.07998 * 126.58630 * 359.97403 * 24 23 21 41 41 H 1.07997 * 125.99365 * 180.11767 * 25 24 23 42 42 H 1.07997 * 125.65347 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.59023 * 246.20072 * 28 17 15 44 44 H 1.08998 * 109.59327 * 6.62663 * 28 17 15 45 45 H 1.07998 * 120.66418 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5946 1.9854 -1.3947 5 1 1.3900 2.6809 0.5916 6 1 3.4821 1.4731 0.8031 7 6 2.0077 -1.2126 0.0005 8 1 2.9253 -1.3066 -0.5612 9 6 1.5128 -2.3153 0.7372 10 6 0.4116 -2.1721 1.6088 11 6 -0.0314 -3.2606 2.3048 12 7 0.5438 -4.4416 2.1688 13 6 1.5764 -4.6358 1.3619 14 7 2.1430 -5.9061 1.2599 15 6 1.7085 -6.9036 2.0553 16 8 0.7539 -6.7256 2.7870 17 7 2.3322 -8.0982 2.0397 18 6 3.5505 -8.2963 1.2428 19 6 3.3496 -9.5084 0.3278 20 6 2.9475 -10.7193 1.1729 21 6 1.6255 -10.4288 1.8870 22 1 0.8553 -10.2038 1.1494 23 7 1.2256 -11.6001 2.6709 24 6 0.0693 -12.3182 2.5259 25 6 0.1072 -13.3066 3.4398 26 7 1.2511 -13.1894 4.1303 27 6 1.9261 -12.1695 3.6752 28 6 1.8101 -9.2255 2.8241 29 6 2.1006 -3.5895 0.6184 30 1 -0.4850 0.8400 0.0004 31 1 -0.0715 -1.2134 1.7269 32 1 -0.8710 -3.1544 2.9759 33 1 2.8497 -6.0717 0.6164 34 1 3.7398 -7.4094 0.6381 35 1 4.3967 -8.4732 1.9066 36 1 2.5630 -9.2921 -0.3952 37 1 4.2791 -9.7247 -0.1989 38 1 2.8279 -11.5893 0.5271 39 1 3.7231 -10.9198 1.9121 40 1 -0.7205 -12.1297 1.8139 41 1 -0.6526 -14.0585 3.5934 42 1 2.8861 -11.8362 4.0409 43 1 2.5167 -9.4792 3.6143 44 1 0.8507 -8.9520 3.2632 45 1 2.9421 -3.7486 -0.0395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871722472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:44 Heat of formation + Delta-G solvation = 69.776264 kcal Electronic energy + Delta-G solvation = -28755.138599 eV Core-core repulsion = 24773.544731 eV Total energy + Delta-G solvation = -3981.593867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.08258 -41.70904 -40.11087 -38.57630 -36.37871 -35.68137 -34.92595 -33.19467 -32.65468 -31.15295 -30.34187 -29.72593 -27.96437 -26.57363 -24.84513 -23.67191 -23.51532 -22.81045 -22.18260 -21.38551 -20.36927 -19.91422 -19.21642 -18.23160 -17.75082 -17.03724 -16.57854 -16.43642 -16.32234 -16.04626 -15.87875 -15.70405 -15.33055 -15.04143 -14.81508 -14.71391 -14.63689 -14.39276 -14.28553 -14.27035 -13.91969 -13.66879 -13.26629 -13.07218 -12.74312 -12.67322 -12.15225 -12.12323 -12.06778 -11.94188 -11.85924 -11.52624 -11.22270 -10.99035 -10.95138 -10.66669 -10.12231 -9.76088 -9.57644 -9.45153 -8.92445 -8.81176 -6.53699 0.85445 0.99435 1.09919 1.33445 1.38641 1.50584 1.64180 1.89664 2.14457 2.20339 2.23628 2.68061 2.80333 3.38639 3.53804 3.76114 3.77279 3.82453 3.89764 4.00450 4.08278 4.10568 4.34767 4.43915 4.54690 4.59827 4.63113 4.71134 4.73867 4.81397 4.85713 4.94180 4.98234 4.98892 5.01731 5.21325 5.23080 5.36332 5.42278 5.52104 5.60259 5.74543 5.81689 5.89913 6.19648 6.26476 6.50115 6.76235 6.78186 6.85731 7.13779 7.53326 7.93078 8.05336 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028918 B = 0.002101 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.016495 B =13323.433944 C =13931.701076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.052 3.948 3 Si 0.980 3.020 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.478 4.478 8 H 0.092 0.908 9 C 0.113 3.887 10 C -0.273 4.273 11 C 0.105 3.895 12 N -0.595 5.595 13 C 0.371 3.629 14 N -0.656 5.656 15 C 0.692 3.308 16 O -0.579 6.579 17 N -0.621 5.621 18 C 0.098 3.902 19 C -0.123 4.123 20 C -0.117 4.117 21 C 0.130 3.870 22 H 0.098 0.902 23 N -0.450 5.450 24 C -0.057 4.057 25 C -0.053 4.053 26 N -0.535 5.535 27 C 0.181 3.819 28 C 0.129 3.871 29 C -0.333 4.333 30 H 0.299 0.701 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.421 0.579 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.191 0.809 41 H 0.181 0.819 42 H 0.227 0.773 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -17.007 -2.568 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.172 4.172 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.506 4.506 8 H 0.110 0.890 9 C 0.106 3.894 10 C -0.297 4.297 11 C -0.045 4.045 12 N -0.316 5.316 13 C 0.142 3.858 14 N -0.308 5.308 15 C 0.393 3.607 16 O -0.453 6.453 17 N -0.361 5.361 18 C -0.024 4.024 19 C -0.162 4.162 20 C -0.155 4.155 21 C 0.025 3.975 22 H 0.116 0.884 23 N -0.133 5.133 24 C -0.190 4.190 25 C -0.200 4.200 26 N -0.254 5.254 27 C -0.102 4.102 28 C 0.005 3.995 29 C -0.359 4.359 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.262 0.738 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.208 0.792 41 H 0.198 0.802 42 H 0.243 0.757 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.271 -17.935 -0.994 19.775 hybrid contribution -0.037 1.958 -1.268 2.333 sum 8.234 -15.976 -2.262 18.115 Atomic orbital electron populations 1.69918 1.10011 1.32234 1.27645 1.27014 0.94968 1.05285 0.89925 0.85255 0.79457 0.75095 0.80284 1.17654 1.18905 1.18171 1.19859 1.08451 0.95418 1.26877 0.88969 1.17866 0.89728 0.91924 0.89930 1.21862 1.03858 0.99604 1.04402 1.21766 0.97566 0.88123 0.97041 1.67308 1.13588 1.25250 1.25448 1.17999 0.90984 0.84008 0.92782 1.42560 1.40898 1.07075 1.40248 1.16165 0.82466 0.80968 0.81068 1.91003 1.29699 1.80918 1.43725 1.47231 1.29062 1.08516 1.51249 1.22094 0.85944 0.99920 0.94410 1.21902 1.04258 0.92654 0.97360 1.21873 0.94333 0.99382 0.99946 1.21940 1.00317 0.82399 0.92813 0.88400 1.45668 1.16401 1.23388 1.27803 1.23150 0.92592 0.97147 1.06083 1.22633 0.97863 1.02080 0.97382 1.70279 1.07311 1.19317 1.28460 1.25402 1.00917 0.93237 0.90602 1.21693 1.00817 0.83988 0.93024 1.21098 1.09869 0.92505 1.12427 0.88939 0.86837 0.85086 0.73845 0.89488 0.88478 0.91608 0.86546 0.89924 0.89021 0.79188 0.80218 0.75651 0.89143 0.91642 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.53 11.29 21.84 0.25 -37.28 16 2 C 0.05 2.40 4.90 85.29 0.42 2.82 16 3 Si 0.98 34.30 29.68 68.60 2.04 36.34 16 4 H -0.25 -8.28 7.11 99.48 0.71 -7.58 16 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 7 C -0.48 -23.96 9.01 23.52 0.21 -23.75 16 8 H 0.09 4.34 8.05 -2.91 -0.02 4.31 16 9 C 0.11 5.99 5.71 -21.11 -0.12 5.86 16 10 C -0.27 -14.63 8.95 22.60 0.20 -14.43 16 11 C 0.10 5.47 11.10 84.27 0.94 6.41 16 12 N -0.59 -31.60 7.86 -194.27 -1.53 -33.12 16 13 C 0.37 17.54 7.42 132.76 0.99 18.53 16 14 N -0.66 -23.54 5.28 -322.37 -1.70 -25.24 16 15 C 0.69 24.99 8.26 179.06 1.48 26.47 16 16 O -0.58 -27.45 14.04 -3.98 -0.06 -27.50 16 17 N -0.62 -14.35 2.97 -836.09 -2.48 -16.83 16 18 C 0.10 1.25 6.43 86.36 0.56 1.81 16 19 C -0.12 -0.99 6.08 30.67 0.19 -0.81 16 20 C -0.12 -1.03 5.20 30.62 0.16 -0.87 16 21 C 0.13 1.94 3.02 45.22 0.14 2.08 16 22 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16 23 N -0.45 -7.74 2.62 -505.38 -1.32 -9.06 16 24 C -0.06 -1.03 11.54 83.08 0.96 -0.07 16 25 C -0.05 -1.10 11.87 83.52 0.99 -0.11 16 26 N -0.53 -12.81 11.25 -200.32 -2.25 -15.06 16 27 C 0.18 3.31 11.49 180.26 2.07 5.38 16 28 C 0.13 2.67 5.83 86.51 0.50 3.18 16 29 C -0.33 -15.85 9.74 23.00 0.22 -15.62 16 30 H 0.30 12.75 8.29 -92.71 -0.77 11.98 16 31 H 0.11 6.12 5.93 -2.91 -0.02 6.10 16 32 H 0.13 6.25 8.06 -2.91 -0.02 6.23 16 33 H 0.42 11.10 6.19 -92.71 -0.57 10.53 16 34 H 0.09 1.07 5.58 -2.39 -0.01 1.05 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.57 7.98 -2.39 -0.02 0.56 16 40 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.23 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.09 1.53 7.82 -2.39 -0.02 1.51 16 44 H 0.06 1.89 7.03 -2.39 -0.02 1.88 16 45 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -76.91 370.68 3.29 -73.62 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.45 Total: 37.27 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 9.90 Total: 16.86 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -9.04 Total: -136.60 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.06 Total: -27.50 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.04 Total: 36.34 kcal Total: -76.91 3.29 -73.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.398 kcal (2) G-P(sol) polarization free energy of solvation -76.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds