Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48496 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47159 * 300.00647 * 3 2 1 6 6 H 1.48502 * 109.46871 * 60.00195 * 3 2 1 7 7 C 1.38950 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99739 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00320 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99739 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46946 * 180.02562 * 12 10 9 14 14 C 1.34229 * 116.99822 * 179.97438 * 13 12 10 15 15 O 1.20825 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00058 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.54253 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47927 * 300.01664 * 17 16 14 19 19 C 1.53100 * 109.49385 * 59.96393 * 17 16 14 20 20 C 1.53179 * 109.15719 * 177.50987 * 19 17 16 21 21 C 1.53177 * 109.10692 * 303.14927 * 20 19 17 22 22 C 1.53089 * 109.16584 * 56.93603 * 21 20 19 23 23 O 1.42902 * 109.41513 * 302.39390 * 22 21 20 24 24 C 1.53180 * 109.54360 * 300.17901 * 16 14 13 25 25 C 1.53107 * 109.15681 * 63.06345 * 24 16 14 26 26 O 1.42910 * 109.48528 * 57.47329 * 25 24 16 27 27 C 1.42897 * 114.09788 * 298.89024 * 26 25 24 28 28 C 1.53094 * 109.41554 * 61.15850 * 27 26 25 29 29 H 0.97000 * 119.99705 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00063 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47030 * 60.00113 * 12 10 9 32 32 H 1.09004 * 109.47140 * 300.00413 * 12 10 9 33 33 H 1.08997 * 109.45514 * 57.64308 * 19 17 16 34 34 H 1.08999 * 109.59440 * 297.45528 * 19 17 16 35 35 H 1.09002 * 109.54484 * 183.23723 * 20 19 17 36 36 H 1.08999 * 109.54222 * 63.05889 * 20 19 17 37 37 H 1.08999 * 109.51892 * 176.84392 * 21 20 19 38 38 H 1.08995 * 109.52152 * 296.96844 * 21 20 19 39 39 H 1.09006 * 109.47817 * 62.37062 * 22 21 20 40 40 H 1.09001 * 109.48474 * 182.39360 * 22 21 20 41 41 H 1.08994 * 109.52303 * 182.87870 * 24 16 14 42 42 H 1.09006 * 109.52646 * 303.07432 * 24 16 14 43 43 H 1.09003 * 109.40794 * 297.49336 * 25 24 16 44 44 H 1.08998 * 109.48327 * 177.50193 * 25 24 16 45 45 H 1.08999 * 109.48279 * 301.17530 * 27 26 25 46 46 H 1.09001 * 109.48436 * 181.14054 * 27 26 25 47 47 H 1.09008 * 109.52177 * 182.48582 * 28 27 26 48 48 H 1.08996 * 109.57448 * 62.32893 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 8 2.1871 -5.9666 -0.0027 14 6 1.6740 -7.2069 -0.0027 15 8 0.4762 -7.3652 -0.0028 16 6 2.5920 -8.4021 -0.0026 17 6 1.7602 -9.6863 -0.0033 18 1 1.1307 -9.7121 0.8862 19 6 0.8766 -9.7221 -1.2531 20 6 0.0939 -11.0385 -1.2778 21 6 1.0803 -12.2094 -1.2274 22 6 1.9544 -12.0766 0.0224 23 8 2.6319 -10.8187 -0.0032 24 6 3.4797 -8.3665 -1.2504 25 6 4.3661 -7.1191 -1.2010 26 8 5.1423 -7.1331 -0.0011 27 6 4.3643 -7.1181 1.1973 28 6 3.4795 -8.3665 1.2453 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6166 -4.9201 -0.8919 32 1 0.6172 -4.9212 0.8880 33 1 1.5030 -9.6538 -2.1425 34 1 0.1797 -8.8842 -1.2322 35 1 -0.4939 -11.0961 -2.1940 36 1 -0.5705 -11.0840 -0.4149 37 1 0.5288 -13.1487 -1.1881 38 1 1.7101 -12.1936 -2.1168 39 1 1.3273 -12.1337 0.9122 40 1 2.6866 -12.8838 0.0414 41 1 4.1075 -9.2571 -1.2763 42 1 2.8536 -8.3349 -2.1422 43 1 3.7386 -6.2279 -1.2175 44 1 5.0314 -7.1114 -2.0643 45 1 3.7367 -6.2270 1.2122 46 1 5.0282 -7.1098 2.0618 47 1 2.8531 -8.3350 2.1369 48 1 4.1064 -9.2577 1.2720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873447394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = -217.830817 kcal Electronic energy + Delta-G solvation = -32048.474465 eV Core-core repulsion = 27682.514596 eV Total energy + Delta-G solvation = -4365.959868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.51725 -39.52206 -38.46188 -38.10073 -36.34506 -34.50033 -34.02115 -33.84138 -31.40389 -31.19205 -30.47969 -28.48045 -26.49580 -24.81733 -24.49761 -23.57963 -23.19786 -21.98904 -20.41028 -19.78826 -19.47737 -18.12028 -17.46611 -16.75593 -16.59285 -16.31167 -16.03304 -15.75298 -15.49586 -15.35833 -14.93639 -14.69482 -14.56521 -14.38467 -14.16572 -13.95941 -13.79159 -13.37488 -13.13328 -12.91549 -12.68420 -12.39515 -12.32587 -12.25397 -11.99634 -11.64553 -11.59933 -11.39517 -11.27676 -11.14187 -11.09323 -10.76276 -10.59879 -10.40279 -10.34009 -10.30850 -10.11115 -10.00480 -9.63171 -9.62267 -9.22609 -8.53789 -8.10114 -6.51979 -3.93827 2.15177 2.43243 3.10486 3.22976 3.30288 3.60156 3.71119 4.08239 4.12124 4.22123 4.34161 4.55573 4.60021 4.62780 4.66948 4.81217 4.91227 5.00467 5.03079 5.03639 5.12709 5.23402 5.34508 5.43108 5.45799 5.49015 5.52131 5.54670 5.61217 5.63458 5.66636 5.75426 5.80641 5.83611 5.86793 5.95963 6.02659 6.07664 6.09573 6.20028 6.39003 6.60741 6.95742 7.45329 7.46534 7.73191 7.93062 8.46012 9.05477 9.37260 9.86687 10.65305 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.002741 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.238382 B =10212.645863 C =11039.538613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.571 6.571 12 C 0.051 3.949 13 O -0.312 6.312 14 C 0.467 3.533 15 O -0.506 6.506 16 C -0.041 4.041 17 C 0.117 3.883 18 H 0.067 0.933 19 C -0.165 4.165 20 C -0.119 4.119 21 C -0.157 4.157 22 C 0.063 3.937 23 O -0.372 6.372 24 C -0.140 4.140 25 C 0.048 3.952 26 O -0.374 6.374 27 C 0.049 3.951 28 C -0.140 4.140 29 H 0.273 0.727 30 H 0.394 0.606 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -22.599 -0.835 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.222 3.778 11 O -0.455 6.455 12 C -0.026 4.026 13 O -0.227 6.227 14 C 0.310 3.690 15 O -0.395 6.395 16 C -0.042 4.042 17 C 0.060 3.940 18 H 0.084 0.916 19 C -0.203 4.203 20 C -0.157 4.157 21 C -0.195 4.195 22 C -0.013 4.013 23 O -0.291 6.291 24 C -0.177 4.177 25 C -0.029 4.029 26 O -0.292 6.292 27 C -0.028 4.028 28 C -0.178 4.178 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.093 0.907 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.293 -22.420 -0.838 22.473 hybrid contribution -1.263 0.706 -0.015 1.447 sum 0.030 -21.714 -0.852 21.731 Atomic orbital electron populations 1.69623 1.06012 1.28380 1.49795 1.25313 0.95680 0.99887 0.96913 0.85752 0.79763 0.80768 0.77805 1.19041 1.20632 1.20627 1.19774 0.93500 0.81698 1.47988 0.87515 1.41713 1.09344 1.04126 1.63842 1.19281 0.88383 0.83990 0.86121 1.90589 1.13166 1.86679 1.55051 1.22859 0.91234 0.85017 1.03535 1.86753 1.39474 1.14078 1.82364 1.23444 0.88211 0.84907 0.72400 1.90592 1.16734 1.86582 1.45559 1.20510 0.94429 0.89289 0.99994 1.21669 0.89675 0.84341 0.98361 0.91554 1.22526 0.99948 0.99587 0.98207 1.21550 0.97637 0.94107 1.02385 1.22208 0.98725 0.98984 0.99590 1.22556 0.96263 0.85849 0.96658 1.87874 1.33013 1.13245 1.94996 1.22290 0.98420 1.01734 0.95300 1.22865 0.95169 0.97014 0.87811 1.87873 1.33061 1.94742 1.13506 1.22849 0.95143 0.96925 0.87868 1.22252 0.98552 1.01836 0.95169 0.91690 0.77238 0.89549 0.89550 0.91072 0.88294 0.91463 0.91849 0.91058 0.91031 0.93254 0.88760 0.88729 0.90506 0.90010 0.88995 0.89975 0.88955 0.90745 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 10 C 0.44 10.12 7.86 -10.98 -0.09 10.03 16 11 O -0.57 -15.14 16.08 -14.11 -0.23 -15.37 16 12 C 0.05 0.92 5.94 36.01 0.21 1.13 16 13 O -0.31 -5.38 4.15 -45.90 -0.19 -5.57 16 14 C 0.47 7.05 6.21 36.01 0.22 7.28 16 15 O -0.51 -8.12 13.43 -18.75 -0.25 -8.37 16 16 C -0.04 -0.52 0.37 -155.47 -0.06 -0.57 16 17 C 0.12 1.33 1.55 -26.68 -0.04 1.28 16 18 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 19 C -0.17 -1.79 4.78 -26.59 -0.13 -1.91 16 20 C -0.12 -1.04 6.02 -26.55 -0.16 -1.20 16 21 C -0.16 -1.17 6.14 -26.59 -0.16 -1.33 16 22 C 0.06 0.50 6.84 37.20 0.25 0.76 16 23 O -0.37 -3.94 8.96 -35.23 -0.32 -4.26 16 24 C -0.14 -1.70 4.36 -26.58 -0.12 -1.81 16 25 C 0.05 0.69 6.55 37.21 0.24 0.94 16 26 O -0.37 -5.97 10.77 -35.23 -0.38 -6.35 16 27 C 0.05 0.70 6.55 37.21 0.24 0.95 16 28 C -0.14 -1.71 4.81 -26.59 -0.13 -1.84 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 31 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 32 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 33 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 34 H 0.10 1.25 5.60 -51.93 -0.29 0.96 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.10 7.60 -51.93 -0.39 0.71 16 42 H 0.08 0.86 6.57 -51.93 -0.34 0.52 16 43 H 0.08 1.39 5.53 -51.93 -0.29 1.11 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.40 5.52 -51.93 -0.29 1.11 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 48 H 0.09 1.10 7.60 -51.93 -0.39 0.70 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -30.80 371.58 -7.29 -38.09 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.23 Total: 11.55 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 0.06 Total: 5.95 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.67 Total: -36.79 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.36 Total: -39.92 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.80 -7.29 -38.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873447394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.737 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds