Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48496 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47159 * 300.00647 * 3 2 1 6 6 H 1.48502 * 109.46871 * 60.00195 * 3 2 1 7 7 C 1.38950 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99739 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00320 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99739 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46946 * 180.02562 * 12 10 9 14 14 C 1.34229 * 116.99822 * 179.97438 * 13 12 10 15 15 O 1.20825 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00058 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.54253 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47927 * 300.01664 * 17 16 14 19 19 C 1.53100 * 109.49385 * 59.96393 * 17 16 14 20 20 C 1.53179 * 109.15719 * 177.50987 * 19 17 16 21 21 C 1.53177 * 109.10692 * 303.14927 * 20 19 17 22 22 C 1.53089 * 109.16584 * 56.93603 * 21 20 19 23 23 O 1.42902 * 109.41513 * 302.39390 * 22 21 20 24 24 C 1.53180 * 109.54360 * 300.17901 * 16 14 13 25 25 C 1.53107 * 109.15681 * 63.06345 * 24 16 14 26 26 O 1.42910 * 109.48528 * 57.47329 * 25 24 16 27 27 C 1.42897 * 114.09788 * 298.89024 * 26 25 24 28 28 C 1.53094 * 109.41554 * 61.15850 * 27 26 25 29 29 H 0.97000 * 119.99705 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00063 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47030 * 60.00113 * 12 10 9 32 32 H 1.09004 * 109.47140 * 300.00413 * 12 10 9 33 33 H 1.08997 * 109.45514 * 57.64308 * 19 17 16 34 34 H 1.08999 * 109.59440 * 297.45528 * 19 17 16 35 35 H 1.09002 * 109.54484 * 183.23723 * 20 19 17 36 36 H 1.08999 * 109.54222 * 63.05889 * 20 19 17 37 37 H 1.08999 * 109.51892 * 176.84392 * 21 20 19 38 38 H 1.08995 * 109.52152 * 296.96844 * 21 20 19 39 39 H 1.09006 * 109.47817 * 62.37062 * 22 21 20 40 40 H 1.09001 * 109.48474 * 182.39360 * 22 21 20 41 41 H 1.08994 * 109.52303 * 182.87870 * 24 16 14 42 42 H 1.09006 * 109.52646 * 303.07432 * 24 16 14 43 43 H 1.09003 * 109.40794 * 297.49336 * 25 24 16 44 44 H 1.08998 * 109.48327 * 177.50193 * 25 24 16 45 45 H 1.08999 * 109.48279 * 301.17530 * 27 26 25 46 46 H 1.09001 * 109.48436 * 181.14054 * 27 26 25 47 47 H 1.09008 * 109.52177 * 182.48582 * 28 27 26 48 48 H 1.08996 * 109.57448 * 62.32893 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 8 2.1871 -5.9666 -0.0027 14 6 1.6740 -7.2069 -0.0027 15 8 0.4762 -7.3652 -0.0028 16 6 2.5920 -8.4021 -0.0026 17 6 1.7602 -9.6863 -0.0033 18 1 1.1307 -9.7121 0.8862 19 6 0.8766 -9.7221 -1.2531 20 6 0.0939 -11.0385 -1.2778 21 6 1.0803 -12.2094 -1.2274 22 6 1.9544 -12.0766 0.0224 23 8 2.6319 -10.8187 -0.0032 24 6 3.4797 -8.3665 -1.2504 25 6 4.3661 -7.1191 -1.2010 26 8 5.1423 -7.1331 -0.0011 27 6 4.3643 -7.1181 1.1973 28 6 3.4795 -8.3665 1.2453 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6166 -4.9201 -0.8919 32 1 0.6172 -4.9212 0.8880 33 1 1.5030 -9.6538 -2.1425 34 1 0.1797 -8.8842 -1.2322 35 1 -0.4939 -11.0961 -2.1940 36 1 -0.5705 -11.0840 -0.4149 37 1 0.5288 -13.1487 -1.1881 38 1 1.7101 -12.1936 -2.1168 39 1 1.3273 -12.1337 0.9122 40 1 2.6866 -12.8838 0.0414 41 1 4.1075 -9.2571 -1.2763 42 1 2.8536 -8.3349 -2.1422 43 1 3.7386 -6.2279 -1.2175 44 1 5.0314 -7.1114 -2.0643 45 1 3.7367 -6.2270 1.2122 46 1 5.0282 -7.1098 2.0618 47 1 2.8531 -8.3350 2.1369 48 1 4.1064 -9.2577 1.2720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873447394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = -237.073283 kcal Electronic energy + Delta-G solvation = -32049.308881 eV Core-core repulsion = 27682.514596 eV Total energy + Delta-G solvation = -4366.794284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.65291 -40.62876 -39.88684 -39.48272 -37.68709 -36.02035 -35.53425 -34.57224 -33.40573 -32.24053 -31.33655 -30.06759 -27.48117 -26.65888 -25.30702 -24.63480 -24.25358 -23.05561 -21.43451 -21.20616 -20.75671 -20.07095 -18.73289 -18.03441 -17.83495 -17.41962 -17.30921 -16.89282 -16.70960 -16.44894 -16.27870 -15.97190 -15.83621 -15.78223 -15.44726 -15.09552 -14.83067 -14.66255 -14.26114 -14.03918 -13.91045 -13.59243 -13.57197 -13.44594 -13.27389 -13.14313 -12.95651 -12.46384 -12.40693 -12.40458 -12.16025 -12.12102 -11.91825 -11.73711 -11.61303 -11.53474 -11.43506 -11.15882 -11.03404 -10.51633 -10.43153 -10.31026 -10.10828 -8.52608 -6.02507 0.94362 1.18967 1.34079 1.43017 1.57303 1.87863 2.27662 2.72239 3.00272 3.02493 3.13122 3.30372 3.37162 3.62650 3.71565 3.91902 3.96403 3.97534 4.02005 4.11014 4.12783 4.13552 4.21718 4.26499 4.41022 4.49553 4.54552 4.58745 4.65206 4.68409 4.77863 4.80316 4.87997 4.92797 5.00333 5.04472 5.08197 5.10395 5.17146 5.24812 5.37449 5.38075 5.44481 5.89413 6.20253 6.29729 6.44404 6.55439 7.03744 7.40814 7.94325 8.64743 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.002741 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.238382 B =10212.645863 C =11039.538613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.084 0.916 9 N -0.560 5.560 10 C 0.439 3.561 11 O -0.609 6.609 12 C 0.061 3.939 13 O -0.323 6.323 14 C 0.467 3.533 15 O -0.515 6.515 16 C -0.040 4.040 17 C 0.125 3.875 18 H 0.062 0.938 19 C -0.165 4.165 20 C -0.119 4.119 21 C -0.152 4.152 22 C 0.056 3.944 23 O -0.381 6.381 24 C -0.129 4.129 25 C 0.045 3.955 26 O -0.391 6.391 27 C 0.046 3.954 28 C -0.132 4.132 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.052 0.948 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -24.369 -0.906 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.102 0.898 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.495 6.495 12 C -0.016 4.016 13 O -0.238 6.238 14 C 0.311 3.689 15 O -0.404 6.404 16 C -0.041 4.041 17 C 0.067 3.933 18 H 0.080 0.920 19 C -0.202 4.202 20 C -0.157 4.157 21 C -0.190 4.190 22 C -0.020 4.020 23 O -0.300 6.300 24 C -0.166 4.166 25 C -0.031 4.031 26 O -0.310 6.310 27 C -0.031 4.031 28 C -0.169 4.169 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.125 0.875 47 H 0.103 0.897 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.968 -24.212 -0.908 24.248 hybrid contribution -1.168 1.189 0.007 1.667 sum -0.200 -23.022 -0.901 23.041 Atomic orbital electron populations 1.69677 1.06909 1.29563 1.49543 1.26090 0.96555 1.02511 0.95841 0.84833 0.78105 0.76788 0.78406 1.19606 1.19511 1.19503 1.19722 0.92854 0.83349 1.50287 0.89826 1.41744 1.09487 1.04222 1.64352 1.20040 0.88136 0.85229 0.84033 1.90560 1.15134 1.87566 1.56235 1.22605 0.90621 0.83123 1.05245 1.86818 1.39487 1.14663 1.82800 1.23968 0.88564 0.84606 0.71751 1.90593 1.17258 1.86544 1.45978 1.20617 0.94255 0.88789 1.00445 1.21502 0.89337 0.84039 0.98382 0.92012 1.22477 0.99665 1.00065 0.98032 1.21562 0.97822 0.93549 1.02728 1.22184 0.98385 0.99157 0.99267 1.22809 0.97023 0.85019 0.97178 1.87855 1.33294 1.13796 1.95077 1.22216 0.98102 1.00834 0.95491 1.22903 0.95386 0.96936 0.87899 1.87841 1.34012 1.94846 1.14261 1.22888 0.95364 0.96852 0.87955 1.22199 0.98303 1.00987 0.95410 0.91050 0.76710 0.87706 0.87727 0.90935 0.90406 0.90831 0.91903 0.89092 0.91118 0.92654 0.86856 0.87482 0.89593 0.92979 0.87603 0.92959 0.87528 0.89698 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 42.10 29.55 68.60 2.03 44.13 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -28.35 5.29 -306.99 -1.62 -29.98 16 10 C 0.44 20.90 7.86 87.66 0.69 21.59 16 11 O -0.61 -33.64 16.08 15.75 0.25 -33.39 16 12 C 0.06 2.23 5.94 71.24 0.42 2.65 16 13 O -0.32 -11.29 4.15 -45.05 -0.19 -11.47 16 14 C 0.47 13.93 6.21 71.24 0.44 14.37 16 15 O -0.51 -16.20 13.43 21.97 0.29 -15.90 16 16 C -0.04 -0.96 0.37 -52.81 -0.02 -0.98 16 17 C 0.13 2.62 1.55 30.63 0.05 2.67 16 18 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 19 C -0.16 -3.33 4.78 30.69 0.15 -3.18 16 20 C -0.12 -1.83 6.02 30.71 0.18 -1.65 16 21 C -0.15 -1.81 6.14 30.68 0.19 -1.62 16 22 C 0.06 0.72 6.84 72.01 0.49 1.21 16 23 O -0.38 -7.08 8.96 -148.98 -1.33 -8.42 16 24 C -0.13 -2.98 4.36 30.69 0.13 -2.85 16 25 C 0.05 1.30 6.55 72.02 0.47 1.77 16 26 O -0.39 -12.51 10.77 -148.98 -1.60 -14.11 16 27 C 0.05 1.32 6.55 72.01 0.47 1.79 16 28 C -0.13 -3.04 4.81 30.68 0.15 -2.89 16 29 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 31 H 0.11 3.43 8.13 -2.39 -0.02 3.41 16 32 H 0.10 3.43 8.13 -2.39 -0.02 3.41 16 33 H 0.07 1.42 6.39 -2.39 -0.02 1.40 16 34 H 0.08 1.91 5.60 -2.39 -0.01 1.90 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.11 2.26 7.60 -2.39 -0.02 2.24 16 42 H 0.09 1.82 6.57 -2.38 -0.02 1.81 16 43 H 0.05 1.84 5.53 -2.39 -0.01 1.82 16 44 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.05 1.84 5.52 -2.39 -0.01 1.83 16 46 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.11 2.26 7.60 -2.39 -0.02 2.24 16 Total: -1.00 -67.06 371.58 3.47 -63.59 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.26 Total: 38.69 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.10 Total: 15.11 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.34 Total: -78.23 kcal Atomic # 8 Polarization: -80.72 SS G_CDS: -2.58 Total: -83.30 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.06 3.47 -63.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873447394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.479 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds