Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48501 * 109.46878 * 269.99693 * 3 2 1 5 5 H 1.48497 * 109.47000 * 29.99962 * 3 2 1 6 6 H 1.48502 * 109.46979 * 150.00090 * 3 2 1 7 7 C 1.38952 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00038 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99921 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00184 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99604 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00117 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47184 * 180.02562 * 12 10 9 14 14 C 1.34222 * 117.00049 * 180.02562 * 13 12 10 15 15 O 1.20829 * 120.00248 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99986 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.54287 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47927 * 179.84291 * 17 16 14 19 19 C 1.53098 * 109.47892 * 59.82424 * 17 16 14 20 20 C 1.53177 * 109.21356 * 182.36258 * 19 17 16 21 21 C 1.53311 * 108.96735 * 56.95427 * 20 19 17 22 22 C 1.53100 * 109.19441 * 303.05955 * 21 20 19 23 23 O 1.42899 * 109.49071 * 299.87718 * 17 16 14 24 24 C 1.53182 * 109.61583 * 300.21932 * 16 14 13 25 25 C 1.53095 * 109.15963 * 62.93291 * 24 16 14 26 26 O 1.42901 * 109.41488 * 57.60537 * 25 24 16 27 27 C 1.42893 * 114.10099 * 298.84154 * 26 25 24 28 28 C 1.53093 * 109.41849 * 61.15688 * 27 26 25 29 29 H 0.97009 * 119.99879 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99809 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47170 * 60.00049 * 12 10 9 32 32 H 1.08996 * 109.47149 * 300.00002 * 12 10 9 33 33 H 1.09002 * 109.52244 * 302.30197 * 19 17 16 34 34 H 1.09004 * 109.52508 * 62.42726 * 19 17 16 35 35 H 1.09001 * 109.54414 * 176.87772 * 20 19 17 36 36 H 1.09002 * 109.54680 * 297.14715 * 20 19 17 37 37 H 1.08992 * 109.51110 * 183.14032 * 21 20 19 38 38 H 1.09005 * 109.50614 * 62.96974 * 21 20 19 39 39 H 1.09002 * 109.47233 * 297.62202 * 22 21 20 40 40 H 1.08999 * 109.48998 * 177.59482 * 22 21 20 41 41 H 1.08995 * 109.52187 * 182.83738 * 24 16 14 42 42 H 1.08998 * 109.52081 * 303.02657 * 24 16 14 43 43 H 1.08999 * 109.47964 * 297.62116 * 25 24 16 44 44 H 1.09002 * 109.47886 * 177.59107 * 25 24 16 45 45 H 1.09001 * 109.48480 * 301.17609 * 27 26 25 46 46 H 1.08995 * 109.49385 * 181.14883 * 27 26 25 47 47 H 1.08996 * 109.52786 * 182.48593 * 28 27 26 48 48 H 1.09002 * 109.56841 * 62.32645 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4209 0.0011 12 6 5.5606 -2.3706 0.0011 13 8 6.0446 -3.7396 0.0005 14 6 7.3753 -3.9155 0.0009 15 8 8.1114 -2.9573 0.0023 16 6 7.9513 -5.3081 0.0009 17 6 9.4793 -5.2299 0.0008 18 1 9.8948 -6.2376 0.0036 19 6 9.9522 -4.4793 1.2486 20 6 11.4783 -4.3530 1.2127 21 6 11.8894 -3.6454 -0.0837 22 6 11.3417 -4.4282 -1.2800 23 8 9.9211 -4.5354 -1.1673 24 6 7.4763 -6.0611 1.2475 25 6 5.9527 -6.2030 1.1986 26 8 5.5771 -6.8821 -0.0013 27 6 5.9535 -6.2008 -1.1996 28 6 7.4771 -6.0587 -1.2473 29 1 -0.4850 0.8401 0.0004 30 1 3.8648 -0.3634 0.0014 31 1 5.9240 -1.8568 0.8911 32 1 5.9240 -1.8568 -0.8889 33 1 9.5047 -3.4855 1.2672 34 1 9.6531 -5.0302 2.1403 35 1 11.8163 -3.7713 2.0703 36 1 11.9272 -5.3458 1.2441 37 1 12.9767 -3.6004 -0.1448 38 1 11.4811 -2.6347 -0.0920 39 1 11.7816 -5.4254 -1.2939 40 1 11.5948 -3.9063 -2.2028 41 1 7.9336 -7.0501 1.2719 42 1 7.7619 -5.5045 2.1401 43 1 5.4948 -5.2140 1.2151 44 1 5.6131 -6.7754 2.0619 45 1 5.4956 -5.2117 -1.2146 46 1 5.6144 -6.7713 -2.0642 47 1 7.7632 -5.5005 -2.1387 48 1 7.9353 -7.0474 -1.2738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873447395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -230.918323 kcal Electronic energy + Delta-G solvation = -32311.604387 eV Core-core repulsion = 27945.077002 eV Total energy + Delta-G solvation = -4366.527385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56965 -40.61124 -39.86001 -39.53575 -37.51459 -36.06930 -35.57864 -34.56450 -33.86162 -32.18524 -31.30964 -30.21316 -27.29493 -26.57772 -25.49196 -24.51447 -23.91485 -23.15617 -21.52604 -21.16345 -20.83637 -20.45558 -18.65482 -17.96773 -17.82384 -17.43757 -17.36383 -16.98291 -16.76241 -16.61029 -15.93571 -15.90925 -15.73336 -15.52955 -15.43158 -15.03469 -14.73365 -14.65644 -14.30924 -14.26559 -13.98386 -13.82075 -13.65144 -13.31241 -13.24477 -13.20448 -13.02195 -12.47750 -12.46185 -12.34918 -12.02276 -12.01442 -11.92259 -11.72292 -11.61308 -11.50538 -11.36465 -11.12621 -10.95170 -10.57436 -10.43923 -10.33991 -10.25340 -8.46619 -6.09150 1.11481 1.27234 1.31748 1.34061 1.43261 1.76220 2.18615 2.64752 2.78778 3.04436 3.07728 3.30884 3.55932 3.66004 3.76710 3.91957 3.93616 4.00686 4.03088 4.08156 4.11508 4.13374 4.15456 4.32871 4.38754 4.48409 4.56219 4.59935 4.65222 4.73264 4.77313 4.81704 4.89639 4.95888 5.01781 5.05624 5.08968 5.13740 5.21998 5.23848 5.36822 5.46116 5.58265 5.85469 6.30272 6.34226 6.46640 6.67955 6.78024 7.25819 7.77860 8.70137 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.003247 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.138734 B = 8622.175577 C = 9825.988117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.007 4.007 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.234 1.234 7 C -0.331 4.331 8 H 0.062 0.938 9 N -0.579 5.579 10 C 0.451 3.549 11 O -0.599 6.599 12 C 0.059 3.941 13 O -0.331 6.331 14 C 0.462 3.538 15 O -0.503 6.503 16 C -0.039 4.039 17 C 0.118 3.882 18 H 0.097 0.903 19 C -0.170 4.170 20 C -0.115 4.115 21 C -0.154 4.154 22 C 0.059 3.941 23 O -0.393 6.393 24 C -0.135 4.135 25 C 0.044 3.956 26 O -0.391 6.391 27 C 0.045 3.955 28 C -0.129 4.129 29 H 0.282 0.718 30 H 0.391 0.609 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.109 0.891 45 H 0.048 0.952 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.363 -9.425 1.361 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.157 1.157 7 C -0.459 4.459 8 H 0.080 0.920 9 N -0.221 5.221 10 C 0.237 3.763 11 O -0.483 6.483 12 C -0.018 4.018 13 O -0.247 6.247 14 C 0.306 3.694 15 O -0.390 6.390 16 C -0.041 4.041 17 C 0.060 3.940 18 H 0.114 0.886 19 C -0.207 4.207 20 C -0.152 4.152 21 C -0.192 4.192 22 C -0.017 4.017 23 O -0.312 6.312 24 C -0.172 4.172 25 C -0.032 4.032 26 O -0.310 6.310 27 C -0.032 4.032 28 C -0.167 4.167 29 H 0.091 0.909 30 H 0.227 0.773 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.127 0.873 45 H 0.066 0.934 46 H 0.122 0.878 47 H 0.100 0.900 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 27.731 -9.806 1.224 29.440 hybrid contribution -0.180 1.674 0.063 1.685 sum 27.551 -8.132 1.287 28.755 Atomic orbital electron populations 1.69783 1.08025 1.29483 1.49306 1.26052 0.96429 1.02520 0.95714 0.85442 0.79515 0.77011 0.80103 1.18035 1.19578 1.15719 1.18997 0.80708 0.95305 1.50912 0.92038 1.41826 1.06109 1.06994 1.67153 1.20117 0.89184 0.84084 0.82868 1.90600 1.70755 1.32291 1.54632 1.22585 0.90944 0.82653 1.05625 1.86827 1.24888 1.29672 1.83354 1.24167 0.79925 0.93306 0.72029 1.90593 1.60061 1.43362 1.44971 1.20911 0.95127 0.88012 1.00008 1.21916 0.89346 0.96380 0.86337 0.88585 1.22548 0.97728 1.02460 0.97977 1.21559 0.94359 1.01561 0.97757 1.22178 1.01793 0.99584 0.95653 1.22699 0.80068 1.00213 0.98756 1.87945 1.23038 1.77927 1.42291 1.22311 0.96808 1.02563 0.95513 1.22903 0.93962 0.98476 0.87902 1.87844 1.80835 1.48076 1.14271 1.22874 0.94123 0.98256 0.87900 1.22157 0.96353 1.02055 0.96132 0.90855 0.77324 0.87118 0.87419 0.91337 0.89630 0.91199 0.90211 0.89258 0.93163 0.91426 0.88684 0.86391 0.88790 0.93273 0.87286 0.93358 0.87843 0.90042 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.96 21.66 0.30 -54.86 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 7 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -27.52 5.09 -306.99 -1.56 -29.08 16 10 C 0.45 20.91 7.86 87.66 0.69 21.60 16 11 O -0.60 -33.62 16.08 15.75 0.25 -33.36 16 12 C 0.06 2.05 5.94 71.23 0.42 2.47 16 13 O -0.33 -11.36 4.15 -44.99 -0.19 -11.55 16 14 C 0.46 13.47 6.05 71.24 0.43 13.91 16 15 O -0.50 -15.86 12.72 27.90 0.35 -15.50 16 16 C -0.04 -0.86 0.37 -52.81 -0.02 -0.88 16 17 C 0.12 2.12 1.80 30.63 0.06 2.17 16 18 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 19 C -0.17 -2.96 4.70 30.69 0.14 -2.81 16 20 C -0.11 -1.54 6.04 30.76 0.19 -1.35 16 21 C -0.15 -2.23 6.14 30.73 0.19 -2.04 16 22 C 0.06 0.89 6.84 72.02 0.49 1.38 16 23 O -0.39 -8.49 8.72 -131.68 -1.15 -9.64 16 24 C -0.13 -2.50 4.48 30.69 0.14 -2.36 16 25 C 0.04 1.16 6.55 72.01 0.47 1.63 16 26 O -0.39 -11.88 10.76 -148.98 -1.60 -13.48 16 27 C 0.04 1.26 6.55 72.01 0.47 1.73 16 28 C -0.13 -2.78 4.72 30.68 0.14 -2.64 16 29 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 30 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 31 H 0.11 3.29 8.13 -2.39 -0.02 3.27 16 32 H 0.11 3.29 8.13 -2.39 -0.02 3.28 16 33 H 0.07 1.65 5.46 -2.39 -0.01 1.64 16 34 H 0.09 1.18 6.66 -2.38 -0.02 1.17 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 1.52 6.69 -2.39 -0.02 1.50 16 43 H 0.05 1.66 5.53 -2.39 -0.01 1.65 16 44 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.05 1.71 5.52 -2.39 -0.01 1.70 16 46 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.08 1.83 7.79 -2.39 -0.02 1.81 16 48 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.19 368.59 3.84 -74.35 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.39 Total: 38.23 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 5.14 Total: 14.49 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.26 Total: -83.95 kcal Atomic # 8 Polarization: -81.21 SS G_CDS: -2.33 Total: -83.54 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -78.19 3.84 -74.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873447395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.569 kcal (2) G-P(sol) polarization free energy of solvation -78.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds