Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47261 * 275.00411 * 3 2 1 5 5 H 1.48499 * 109.47290 * 35.00171 * 3 2 1 6 6 H 1.48500 * 109.47159 * 155.00139 * 3 2 1 7 7 C 1.40026 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00101 * 185.12983 * 7 2 1 9 9 C 1.41336 * 120.00049 * 5.11799 * 7 2 1 10 10 C 1.40602 * 119.78975 * 174.88485 * 9 7 2 11 11 C 1.38315 * 119.13221 * 180.02562 * 10 9 7 12 12 C 1.38689 * 118.66842 * 0.02562 * 11 10 9 13 13 C 1.39641 * 119.49838 * 359.97438 * 12 11 10 14 14 N 1.39246 * 119.57760 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99611 * 338.98941 * 14 13 12 16 16 O 1.21575 * 120.00346 * 3.61956 * 15 14 13 17 17 N 1.34777 * 119.99736 * 183.62105 * 15 14 13 18 18 C 1.46926 * 120.62994 * 354.86018 * 17 15 14 19 19 C 1.53197 * 108.77140 * 233.58389 * 18 17 15 20 20 C 1.53039 * 109.31803 * 305.36370 * 19 18 17 21 21 C 1.53041 * 109.53482 * 61.36570 * 20 19 18 22 22 H 1.09004 * 109.49723 * 58.62057 * 21 20 19 23 23 C 1.50697 * 109.49854 * 178.68492 * 21 20 19 24 24 C 1.39863 * 125.89898 * 84.99945 * 23 21 20 25 25 C 1.35319 * 107.92157 * 179.76022 * 24 23 21 26 26 N 1.34950 * 107.74432 * 0.42312 * 25 24 23 27 27 H 0.97001 * 126.04320 * 179.83983 * 26 25 24 28 28 N 1.30841 * 125.89855 * 265.02339 * 23 21 20 29 29 C 1.46928 * 120.63177 * 174.83927 * 17 15 14 30 30 N 1.31928 * 120.84777 * 0.27581 * 13 12 11 31 31 H 0.96999 * 119.99881 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.43634 * 0.03227 * 10 9 7 33 33 H 1.07997 * 120.66490 * 180.02562 * 11 10 9 34 34 H 1.08000 * 120.25154 * 179.97438 * 12 11 10 35 35 H 0.97000 * 119.99960 * 158.99137 * 14 13 12 36 36 H 1.09001 * 109.58676 * 113.80152 * 18 17 15 37 37 H 1.08999 * 109.59174 * 353.37019 * 18 17 15 38 38 H 1.09011 * 109.49464 * 185.40857 * 19 18 17 39 39 H 1.08996 * 109.52310 * 65.34022 * 19 18 17 40 40 H 1.08998 * 109.46060 * 301.35198 * 20 19 18 41 41 H 1.08995 * 109.45943 * 181.38406 * 20 19 18 42 42 H 1.07998 * 126.04159 * 0.02562 * 24 23 21 43 43 H 1.07997 * 126.12912 * 180.26863 * 25 24 23 44 44 H 1.08998 * 109.58207 * 6.62013 * 29 17 15 45 45 H 1.09004 * 109.58687 * 246.20310 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3832 2.1075 -1.3948 5 1 1.4958 2.6198 0.8031 6 1 3.5878 1.4119 0.5917 7 6 2.0075 -1.2127 -0.0005 8 1 3.0843 -1.2146 0.0831 9 6 1.3051 -2.4342 -0.1103 10 6 2.0167 -3.6419 -0.2189 11 6 1.3156 -4.8294 -0.3261 12 6 -0.0706 -4.7861 -0.3232 13 6 -0.7199 -3.5548 -0.2124 14 7 -2.1116 -3.5095 -0.2087 15 6 -2.8205 -4.5346 -0.7215 16 8 -2.2475 -5.5272 -1.1271 17 7 -4.1647 -4.4594 -0.7846 18 6 -4.8790 -3.3176 -0.1975 19 6 -5.9484 -3.8464 0.7635 20 6 -6.8490 -4.8376 0.0230 21 6 -6.0123 -6.0216 -0.4673 22 1 -5.5309 -6.5039 0.3834 23 6 -6.9054 -7.0126 -1.1683 24 6 -7.2908 -6.9621 -2.5118 25 6 -8.0863 -8.0289 -2.7572 26 7 -8.2078 -8.7245 -1.6072 27 1 -8.7225 -9.5373 -1.4835 28 7 -7.4545 -8.0687 -0.6250 29 6 -4.9436 -5.5175 -1.4423 30 7 -0.0317 -2.4334 -0.1161 31 1 -0.4850 0.8400 0.0004 32 1 3.0968 -3.6425 -0.2186 33 1 1.8371 -5.7713 -0.4105 34 1 -0.6436 -5.6978 -0.4059 35 1 -2.5708 -2.7401 0.1629 36 1 -5.3536 -2.7374 -0.9888 37 1 -4.1761 -2.6884 0.3485 38 1 -6.5489 -3.0149 1.1328 39 1 -5.4676 -4.3486 1.6029 40 1 -7.3107 -4.3412 -0.8305 41 1 -7.6258 -5.1967 0.6979 42 1 -7.0009 -6.2076 -3.2281 43 1 -8.5441 -8.2776 -3.7032 44 1 -4.2832 -6.3397 -1.7178 45 1 -5.4235 -5.1167 -2.3352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881151707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 100.708186 kcal Electronic energy + Delta-G solvation = -28972.217164 eV Core-core repulsion = 24991.964605 eV Total energy + Delta-G solvation = -3980.252559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49100 -40.33131 -38.35947 -37.17089 -34.38857 -33.78074 -33.01128 -32.06556 -30.42131 -30.27793 -29.86062 -28.91531 -25.72714 -25.10509 -24.01489 -22.10391 -21.69937 -21.52509 -21.07628 -19.48571 -19.11992 -18.36418 -18.01933 -17.37601 -16.26890 -15.45015 -15.27664 -15.05495 -14.88535 -14.70557 -14.51314 -14.20929 -14.01455 -13.83534 -13.67462 -13.31918 -13.19636 -12.99056 -12.84132 -12.52918 -12.17329 -11.92510 -11.52433 -11.23817 -11.20072 -11.11570 -10.96708 -10.86730 -10.75702 -10.74245 -10.59490 -10.05481 -9.81061 -9.59810 -9.19968 -8.97502 -8.93573 -8.51295 -7.96778 -7.61560 -7.01321 -6.37202 -4.45175 1.64913 2.51261 2.58234 2.73771 2.91822 2.99856 3.11146 3.14836 3.29671 3.70285 3.98266 4.18786 4.33704 4.53524 4.73417 4.74625 4.83391 4.84341 4.98760 5.22655 5.27153 5.38998 5.46381 5.49588 5.68340 5.68936 5.73520 5.81359 5.93910 5.96471 6.01212 6.20353 6.21711 6.36569 6.48666 6.56080 6.81440 6.86784 7.01046 7.03782 7.11449 7.25194 7.44663 7.57162 7.66242 7.97178 8.10556 8.22750 8.46228 8.75362 8.94729 9.09817 10.10864 10.35891 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.002401 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.670783 B =11659.998397 C =12557.044188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.437 4.437 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.290 4.290 11 C -0.051 4.051 12 C -0.312 4.312 13 C 0.371 3.629 14 N -0.658 5.658 15 C 0.712 3.288 16 O -0.568 6.568 17 N -0.630 5.630 18 C 0.107 3.893 19 C -0.134 4.134 20 C -0.105 4.105 21 C -0.024 4.024 22 H 0.090 0.910 23 C 0.092 3.908 24 C -0.266 4.266 25 C 0.056 3.944 26 N -0.481 5.481 27 H 0.438 0.562 28 N -0.292 5.292 29 C 0.143 3.857 30 N -0.509 5.509 31 H 0.269 0.731 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.149 0.851 43 H 0.176 0.824 44 H 0.098 0.902 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.424 -7.917 -2.913 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.153 3.847 10 C -0.313 4.313 11 C -0.076 4.076 12 C -0.337 4.337 13 C 0.136 3.864 14 N -0.306 5.306 15 C 0.413 3.587 16 O -0.444 6.444 17 N -0.368 5.368 18 C -0.016 4.016 19 C -0.172 4.172 20 C -0.143 4.143 21 C -0.045 4.045 22 H 0.109 0.891 23 C -0.076 4.076 24 C -0.295 4.295 25 C -0.091 4.091 26 N -0.189 5.189 27 H 0.281 0.719 28 N -0.115 5.115 29 C 0.019 3.981 30 N -0.227 5.227 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.157 0.843 35 H 0.240 0.760 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.167 0.833 43 H 0.193 0.807 44 H 0.116 0.884 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.770 -8.373 -2.107 21.573 hybrid contribution 0.254 0.417 -0.719 0.870 sum -19.516 -7.955 -2.826 21.264 Atomic orbital electron populations 1.70124 1.07182 1.27344 1.29972 1.26022 0.94866 1.00924 0.93428 0.86340 0.80584 0.81050 0.78947 1.19604 1.20253 1.18571 1.19542 0.94459 0.89301 1.43627 0.89737 1.18171 0.86341 0.92080 0.88105 1.21710 0.98721 0.93775 1.17073 1.20836 0.93796 0.96568 0.96387 1.21843 0.94537 0.98177 1.19170 1.18244 0.81988 0.90934 0.95253 1.42416 1.05506 1.20966 1.61729 1.15662 0.80882 0.83396 0.78733 1.90788 1.67756 1.31644 1.54257 1.47216 1.04007 1.24023 1.61538 1.21695 0.95033 0.88239 0.96649 1.21935 0.97289 0.99462 0.98540 1.21496 0.97517 0.94905 1.00398 1.19938 0.93606 0.92688 0.98287 0.89122 1.22116 0.97597 0.94340 0.93513 1.21468 1.07825 1.03186 0.97052 1.22596 1.00441 0.94055 0.92036 1.46345 1.41088 1.24189 1.07240 0.71877 1.77321 1.11740 1.09316 1.13142 1.21347 0.92348 0.91017 0.93377 1.68012 1.08304 1.24262 1.22153 0.91964 0.88326 0.88417 0.84346 0.76012 0.91042 0.89878 0.90264 0.91099 0.91263 0.91503 0.83309 0.80714 0.88406 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.87 11.48 55.55 0.64 -18.24 16 2 C 0.07 1.82 5.49 -17.35 -0.10 1.73 16 3 Si 0.91 18.59 29.56 -169.99 -5.03 13.56 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.44 -11.79 9.13 -37.73 -0.34 -12.13 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.28 7.82 6.55 -84.99 -0.56 7.26 16 10 C -0.29 -7.44 9.83 -38.66 -0.38 -7.82 16 11 C -0.05 -1.24 10.15 -39.39 -0.40 -1.64 16 12 C -0.31 -7.89 8.89 -38.89 -0.35 -8.23 16 13 C 0.37 9.42 7.51 -154.99 -1.16 8.26 16 14 N -0.66 -13.73 5.32 -15.79 -0.08 -13.81 16 15 C 0.71 13.76 8.20 -86.92 -0.71 13.05 16 16 O -0.57 -12.76 12.42 5.30 0.07 -12.70 16 17 N -0.63 -8.99 2.97 -178.50 -0.53 -9.52 16 18 C 0.11 1.18 6.38 -3.71 -0.02 1.16 16 19 C -0.13 -1.21 6.08 -26.61 -0.16 -1.38 16 20 C -0.10 -0.94 5.15 -26.69 -0.14 -1.08 16 21 C -0.02 -0.26 2.80 -91.65 -0.26 -0.52 16 22 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 23 C 0.09 1.01 6.13 -82.41 -0.51 0.51 16 24 C -0.27 -2.40 9.95 -40.01 -0.40 -2.80 16 25 C 0.06 0.39 11.99 -17.22 -0.21 0.19 16 26 N -0.48 -3.88 7.36 30.45 0.22 -3.65 16 27 H 0.44 2.07 8.96 -182.61 -1.64 0.43 16 28 N -0.29 -3.43 12.70 33.67 0.43 -3.00 16 29 C 0.14 1.77 5.42 -3.71 -0.02 1.75 16 30 N -0.51 -14.07 7.91 -10.26 -0.08 -14.15 16 31 H 0.27 6.33 8.29 -40.82 -0.34 6.00 16 32 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.14 3.49 5.17 -52.90 -0.27 3.22 16 35 H 0.40 7.54 6.31 -40.82 -0.26 7.28 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.96 5.65 -51.93 -0.29 0.67 16 38 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.15 1.13 7.29 -52.49 -0.38 0.75 16 43 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.10 1.43 6.99 -51.93 -0.36 1.07 16 45 H 0.07 0.73 7.04 -51.93 -0.37 0.37 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -34.44 367.30 -11.46 -45.90 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.92 Total: 11.76 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -5.71 Total: -1.69 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.59 Total: -62.37 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.44 -11.46 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.610 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds