Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47261 * 275.00411 * 3 2 1 5 5 H 1.48499 * 109.47290 * 35.00171 * 3 2 1 6 6 H 1.48500 * 109.47159 * 155.00139 * 3 2 1 7 7 C 1.40026 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00101 * 185.12983 * 7 2 1 9 9 C 1.41336 * 120.00049 * 5.11799 * 7 2 1 10 10 C 1.40602 * 119.78975 * 174.88485 * 9 7 2 11 11 C 1.38315 * 119.13221 * 180.02562 * 10 9 7 12 12 C 1.38689 * 118.66842 * 0.02562 * 11 10 9 13 13 C 1.39641 * 119.49838 * 359.97438 * 12 11 10 14 14 N 1.39246 * 119.57760 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99611 * 338.98941 * 14 13 12 16 16 O 1.21575 * 120.00346 * 3.61956 * 15 14 13 17 17 N 1.34777 * 119.99736 * 183.62105 * 15 14 13 18 18 C 1.46926 * 120.62994 * 354.86018 * 17 15 14 19 19 C 1.53197 * 108.77140 * 233.58389 * 18 17 15 20 20 C 1.53039 * 109.31803 * 305.36370 * 19 18 17 21 21 C 1.53041 * 109.53482 * 61.36570 * 20 19 18 22 22 H 1.09004 * 109.49723 * 58.62057 * 21 20 19 23 23 C 1.50697 * 109.49854 * 178.68492 * 21 20 19 24 24 C 1.39863 * 125.89898 * 84.99945 * 23 21 20 25 25 C 1.35319 * 107.92157 * 179.76022 * 24 23 21 26 26 N 1.34950 * 107.74432 * 0.42312 * 25 24 23 27 27 H 0.97001 * 126.04320 * 179.83983 * 26 25 24 28 28 N 1.30841 * 125.89855 * 265.02339 * 23 21 20 29 29 C 1.46928 * 120.63177 * 174.83927 * 17 15 14 30 30 N 1.31928 * 120.84777 * 0.27581 * 13 12 11 31 31 H 0.96999 * 119.99881 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.43634 * 0.03227 * 10 9 7 33 33 H 1.07997 * 120.66490 * 180.02562 * 11 10 9 34 34 H 1.08000 * 120.25154 * 179.97438 * 12 11 10 35 35 H 0.97000 * 119.99960 * 158.99137 * 14 13 12 36 36 H 1.09001 * 109.58676 * 113.80152 * 18 17 15 37 37 H 1.08999 * 109.59174 * 353.37019 * 18 17 15 38 38 H 1.09011 * 109.49464 * 185.40857 * 19 18 17 39 39 H 1.08996 * 109.52310 * 65.34022 * 19 18 17 40 40 H 1.08998 * 109.46060 * 301.35198 * 20 19 18 41 41 H 1.08995 * 109.45943 * 181.38406 * 20 19 18 42 42 H 1.07998 * 126.04159 * 0.02562 * 24 23 21 43 43 H 1.07997 * 126.12912 * 180.26863 * 25 24 23 44 44 H 1.08998 * 109.58207 * 6.62013 * 29 17 15 45 45 H 1.09004 * 109.58687 * 246.20310 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3832 2.1075 -1.3948 5 1 1.4958 2.6198 0.8031 6 1 3.5878 1.4119 0.5917 7 6 2.0075 -1.2127 -0.0005 8 1 3.0843 -1.2146 0.0831 9 6 1.3051 -2.4342 -0.1103 10 6 2.0167 -3.6419 -0.2189 11 6 1.3156 -4.8294 -0.3261 12 6 -0.0706 -4.7861 -0.3232 13 6 -0.7199 -3.5548 -0.2124 14 7 -2.1116 -3.5095 -0.2087 15 6 -2.8205 -4.5346 -0.7215 16 8 -2.2475 -5.5272 -1.1271 17 7 -4.1647 -4.4594 -0.7846 18 6 -4.8790 -3.3176 -0.1975 19 6 -5.9484 -3.8464 0.7635 20 6 -6.8490 -4.8376 0.0230 21 6 -6.0123 -6.0216 -0.4673 22 1 -5.5309 -6.5039 0.3834 23 6 -6.9054 -7.0126 -1.1683 24 6 -7.2908 -6.9621 -2.5118 25 6 -8.0863 -8.0289 -2.7572 26 7 -8.2078 -8.7245 -1.6072 27 1 -8.7225 -9.5373 -1.4835 28 7 -7.4545 -8.0687 -0.6250 29 6 -4.9436 -5.5175 -1.4423 30 7 -0.0317 -2.4334 -0.1161 31 1 -0.4850 0.8400 0.0004 32 1 3.0968 -3.6425 -0.2186 33 1 1.8371 -5.7713 -0.4105 34 1 -0.6436 -5.6978 -0.4059 35 1 -2.5708 -2.7401 0.1629 36 1 -5.3536 -2.7374 -0.9888 37 1 -4.1761 -2.6884 0.3485 38 1 -6.5489 -3.0149 1.1328 39 1 -5.4676 -4.3486 1.6029 40 1 -7.3107 -4.3412 -0.8305 41 1 -7.6258 -5.1967 0.6979 42 1 -7.0009 -6.2076 -3.2281 43 1 -8.5441 -8.2776 -3.7032 44 1 -4.2832 -6.3397 -1.7178 45 1 -5.4235 -5.1167 -2.3352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881151707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 78.982345 kcal Electronic energy + Delta-G solvation = -28973.159267 eV Core-core repulsion = 24991.964605 eV Total energy + Delta-G solvation = -3981.194662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.24587 -41.74028 -39.97465 -38.57167 -36.08663 -35.29749 -34.45959 -32.99144 -32.29975 -31.28732 -30.83526 -30.39495 -27.48223 -26.42648 -24.99926 -23.51619 -23.43446 -22.41102 -22.31692 -20.80764 -20.11730 -19.44040 -19.23001 -18.95823 -17.96697 -16.95588 -16.70458 -16.38511 -16.19313 -15.94120 -15.72945 -15.54640 -15.21255 -14.99424 -14.67549 -14.56089 -14.37956 -14.27485 -13.87283 -13.82216 -13.79882 -13.44332 -12.92052 -12.86445 -12.64602 -12.55385 -12.34810 -11.93447 -11.85879 -11.79822 -11.71271 -11.59924 -11.51270 -11.03202 -10.68490 -10.34835 -9.96455 -9.74189 -9.61337 -9.59238 -8.90340 -8.28135 -6.47631 0.83865 1.00005 1.14297 1.44723 1.45270 1.57069 1.58783 1.84786 2.04883 2.13737 2.26800 2.82084 2.90811 3.55512 3.74322 3.86405 3.94805 4.01300 4.06661 4.18797 4.34156 4.36447 4.50787 4.55519 4.66531 4.67377 4.77372 4.81353 4.88236 4.90638 4.92389 4.96447 5.04754 5.06944 5.16598 5.21710 5.27133 5.41688 5.48990 5.63255 5.70210 5.71446 5.82305 6.01857 6.20147 6.31345 6.51791 6.74094 6.75973 6.86492 7.01293 7.48470 8.12784 8.48154 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.002401 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.670783 B =11659.998397 C =12557.044188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.308 4.308 11 C -0.050 4.050 12 C -0.329 4.329 13 C 0.363 3.637 14 N -0.654 5.654 15 C 0.707 3.293 16 O -0.604 6.604 17 N -0.618 5.618 18 C 0.101 3.899 19 C -0.126 4.126 20 C -0.096 4.096 21 C -0.015 4.015 22 H 0.064 0.936 23 C 0.078 3.922 24 C -0.289 4.289 25 C 0.074 3.926 26 N -0.474 5.474 27 H 0.451 0.549 28 N -0.337 5.337 29 C 0.145 3.855 30 N -0.532 5.532 31 H 0.279 0.721 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.411 0.589 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.162 0.838 43 H 0.219 0.781 44 H 0.070 0.930 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.220 -6.798 -3.832 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.109 0.891 9 C 0.118 3.882 10 C -0.331 4.331 11 C -0.074 4.074 12 C -0.354 4.354 13 C 0.127 3.873 14 N -0.304 5.304 15 C 0.408 3.592 16 O -0.484 6.484 17 N -0.354 5.354 18 C -0.021 4.021 19 C -0.164 4.164 20 C -0.135 4.135 21 C -0.037 4.037 22 H 0.082 0.918 23 C -0.089 4.089 24 C -0.318 4.318 25 C -0.073 4.073 26 N -0.184 5.184 27 H 0.297 0.703 28 N -0.162 5.162 29 C 0.022 3.978 30 N -0.252 5.252 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.250 0.750 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.179 0.821 43 H 0.236 0.764 44 H 0.088 0.912 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.643 -7.274 -3.007 23.029 hybrid contribution 0.677 -0.040 -0.473 0.827 sum -20.965 -7.314 -3.480 22.476 Atomic orbital electron populations 1.70193 1.08752 1.29034 1.29469 1.26954 0.95816 1.04354 0.92463 0.85104 0.79116 0.75787 0.79102 1.19132 1.19053 1.18021 1.19924 0.95057 0.90170 1.44595 0.89077 1.18706 0.87099 0.93449 0.88898 1.21887 0.99535 0.93673 1.17980 1.21181 0.93668 0.97580 0.94995 1.22025 0.95191 0.98236 1.19966 1.18559 0.83716 0.90661 0.94345 1.42318 1.04115 1.21861 1.62101 1.15844 0.82398 0.82490 0.78430 1.90742 1.69121 1.32779 1.55755 1.47283 1.02280 1.25256 1.60622 1.22004 0.95149 0.87212 0.97773 1.21906 0.96803 1.00268 0.97456 1.21459 0.97065 0.93942 1.01008 1.19772 0.93429 0.93574 0.96915 0.91755 1.22135 0.97839 0.94325 0.94588 1.21732 1.08955 1.04697 0.96393 1.23265 0.98713 0.92522 0.92850 1.46397 1.40449 1.24490 1.07035 0.70317 1.77233 1.13488 1.10287 1.15143 1.21458 0.91913 0.89827 0.94596 1.68048 1.08558 1.25108 1.23504 0.90994 0.86860 0.85352 0.84499 0.75000 0.88473 0.90614 0.87414 0.92565 0.89474 0.91196 0.82066 0.76413 0.91190 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.45 11.48 21.84 0.25 -39.20 16 2 C 0.03 1.31 5.49 85.29 0.47 1.78 16 3 Si 0.99 37.69 29.56 68.60 2.03 39.72 16 4 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.47 -25.50 9.13 23.47 0.21 -25.29 16 8 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.24 14.07 6.55 40.20 0.26 14.33 16 10 C -0.31 -16.13 9.83 22.87 0.22 -15.90 16 11 C -0.05 -2.46 10.15 22.40 0.23 -2.23 16 12 C -0.33 -17.13 8.89 22.72 0.20 -16.93 16 13 C 0.36 19.06 7.51 133.24 1.00 20.06 16 14 N -0.65 -28.14 5.32 -322.14 -1.71 -29.86 16 15 C 0.71 28.13 8.20 179.05 1.47 29.60 16 16 O -0.60 -28.29 12.42 -3.95 -0.05 -28.34 16 17 N -0.62 -17.64 2.97 -836.91 -2.49 -20.13 16 18 C 0.10 2.09 6.38 86.36 0.55 2.64 16 19 C -0.13 -2.08 6.08 30.67 0.19 -1.89 16 20 C -0.10 -1.57 5.15 30.62 0.16 -1.42 16 21 C -0.02 -0.33 2.80 -11.46 -0.03 -0.37 16 22 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 23 C 0.08 1.67 6.13 43.10 0.26 1.93 16 24 C -0.29 -4.66 9.95 21.99 0.22 -4.44 16 25 C 0.07 0.84 11.99 83.54 1.00 1.84 16 26 N -0.47 -6.86 7.36 -57.59 -0.42 -7.28 16 27 H 0.45 3.49 8.96 -213.33 -1.91 1.58 16 28 N -0.34 -7.80 12.70 -47.39 -0.60 -8.40 16 29 C 0.15 3.58 5.42 86.36 0.47 4.05 16 30 N -0.53 -30.33 7.91 -186.37 -1.47 -31.81 16 31 H 0.28 13.06 8.29 -92.71 -0.77 12.29 16 32 H 0.11 5.40 8.06 -2.91 -0.02 5.38 16 33 H 0.13 5.38 8.06 -2.91 -0.02 5.36 16 34 H 0.14 7.16 5.17 -9.52 -0.05 7.11 16 35 H 0.41 15.78 6.31 -92.71 -0.59 15.19 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.71 5.65 -2.39 -0.01 1.70 16 38 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.16 2.06 7.29 -2.91 -0.02 2.04 16 43 H 0.22 0.39 8.06 -2.91 -0.02 0.36 16 44 H 0.07 2.14 6.99 -2.39 -0.02 2.13 16 45 H 0.10 1.87 7.04 -2.38 -0.02 1.85 16 Total: -1.00 -77.86 367.30 0.94 -76.92 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -1.47 Total: 40.61 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.88 Total: 7.76 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -6.45 Total: -136.68 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -77.86 0.94 -76.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.901 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds