Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48502 * 109.47176 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47197 * 119.99529 * 3 2 1 6 6 H 1.48500 * 109.47224 * 239.99711 * 3 2 1 7 7 C 1.40024 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99653 * 4.82696 * 7 2 1 9 9 C 1.41339 * 120.00095 * 184.82904 * 7 2 1 10 10 C 1.40610 * 119.78388 * 184.85351 * 9 7 2 11 11 C 1.38315 * 119.12444 * 179.70523 * 10 9 7 12 12 C 1.38685 * 118.66900 * 0.55756 * 11 10 9 13 13 C 1.39638 * 119.50035 * 359.72939 * 12 11 10 14 14 N 1.39246 * 119.57925 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99789 * 18.86019 * 14 13 12 16 16 O 1.21575 * 120.00228 * 5.82971 * 15 14 13 17 17 N 1.34772 * 120.00060 * 185.83676 * 15 14 13 18 18 C 1.46930 * 120.63119 * 4.93667 * 17 15 14 19 19 C 1.53623 * 108.54213 * 126.37106 * 18 17 15 20 20 C 1.53037 * 109.24180 * 54.85781 * 19 18 17 21 21 C 1.50703 * 109.45928 * 178.48859 * 20 19 18 22 22 N 1.30503 * 125.65236 * 215.09035 * 21 20 19 23 23 C 1.34126 * 109.25573 * 180.02562 * 22 21 20 24 24 C 1.34670 * 108.02336 * 0.02562 * 23 22 21 25 25 N 1.35045 * 125.65077 * 34.78987 * 21 20 19 26 26 H 0.97001 * 126.39773 * 359.97438 * 25 21 20 27 27 C 1.53035 * 109.53883 * 298.51059 * 20 19 18 28 28 C 1.46922 * 120.63439 * 185.21849 * 17 15 14 29 29 N 1.31927 * 120.84856 * 359.97387 * 13 12 11 30 30 H 0.97002 * 120.00064 * 174.99131 * 1 2 3 31 31 H 1.08000 * 120.43866 * 0.02562 * 10 9 7 32 32 H 1.08000 * 120.66159 * 180.26561 * 11 10 9 33 33 H 1.08004 * 120.25019 * 179.74889 * 12 11 10 34 34 H 0.96997 * 120.00166 * 198.86367 * 14 13 12 35 35 H 1.08996 * 109.58923 * 246.20485 * 18 17 15 36 36 H 1.09003 * 109.58321 * 6.63418 * 18 17 15 37 37 H 1.09006 * 109.63554 * 294.86417 * 19 18 17 38 38 H 1.09003 * 109.43126 * 174.72809 * 19 18 17 39 39 H 1.08999 * 109.46249 * 58.53254 * 20 19 18 40 40 H 1.08000 * 125.98545 * 180.02562 * 23 22 21 41 41 H 1.08000 * 126.58985 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.50127 * 301.41252 * 27 20 19 43 43 H 1.08998 * 109.52551 * 181.33625 * 27 20 19 44 44 H 1.09003 * 109.58742 * 353.37664 * 28 17 15 45 45 H 1.09006 * 109.58867 * 113.79319 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0950 1.6965 1.2126 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2126 0.0005 8 1 1.4704 -2.1463 -0.0777 9 6 3.4172 -1.2147 0.1036 10 6 4.1232 -2.4264 0.0010 11 6 5.5029 -2.4119 0.0977 12 6 6.1426 -1.1990 0.3049 13 6 5.3850 -0.0302 0.4045 14 7 6.0256 1.1885 0.6131 15 6 7.3404 1.3133 0.3444 16 8 7.9437 0.3966 -0.1788 17 7 7.9865 2.4544 0.6557 18 6 7.2990 3.5289 1.3848 19 6 8.1333 3.8905 2.6231 20 6 9.5582 4.2391 2.1870 21 6 10.3710 4.6306 3.3941 22 7 11.3069 5.5398 3.4186 23 6 11.8137 5.6195 4.6579 24 6 11.1678 4.7255 5.4305 25 7 10.2478 4.1027 4.6309 26 1 9.6256 3.4094 4.9015 27 6 10.1990 3.0238 1.5130 28 6 9.3898 2.6501 0.2671 29 7 4.0701 -0.0656 0.3034 30 1 -0.4850 -0.8368 -0.0733 31 1 3.5955 -3.3555 -0.1565 32 1 6.0702 -3.3274 0.0181 33 1 7.2186 -1.1586 0.3884 34 1 5.5256 1.9475 0.9519 35 1 7.1993 4.4022 0.7403 36 1 6.3118 3.1864 1.6950 37 1 8.1595 3.0425 3.3075 38 1 7.6857 4.7490 3.1239 39 1 9.5293 5.0713 1.4835 40 1 12.6017 6.2843 4.9796 41 1 11.3391 4.5394 6.4805 42 1 10.2058 2.1839 2.2077 43 1 11.2219 3.2648 1.2237 44 1 9.7826 1.7277 -0.1606 45 1 9.4572 3.4532 -0.4668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = 44.811154 kcal Electronic energy + Delta-G solvation = -29189.281303 eV Core-core repulsion = 25206.604867 eV Total energy + Delta-G solvation = -3982.676436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.03085 -42.01502 -40.34704 -38.69367 -36.32843 -35.48456 -34.53891 -33.40888 -32.99312 -32.17863 -31.18241 -29.90255 -27.32668 -26.46573 -24.64580 -23.91706 -23.58319 -22.69469 -21.95519 -21.34817 -20.80929 -20.13387 -19.68022 -18.75297 -18.21994 -17.17299 -16.85169 -16.72594 -16.24838 -15.97342 -15.76403 -15.53004 -15.30888 -15.09948 -15.06498 -14.85915 -14.49088 -14.45422 -14.32152 -14.21697 -13.95883 -13.70847 -13.41103 -12.94592 -12.71464 -12.45083 -12.34021 -12.21708 -11.80975 -11.75819 -11.72515 -11.59367 -11.13445 -11.00757 -10.96966 -10.92537 -10.40459 -9.85460 -9.70445 -9.31359 -9.25966 -9.12783 -6.80949 0.59717 0.75623 1.15301 1.31783 1.56776 1.69799 1.97246 2.05501 2.18074 2.28143 2.44897 2.65996 2.69638 3.27627 3.57535 3.60190 3.80878 3.99880 4.06811 4.16453 4.20852 4.27962 4.36299 4.40930 4.52389 4.58416 4.63905 4.68397 4.70825 4.75304 4.79514 4.85747 4.86989 4.92844 5.01050 5.19260 5.28375 5.32401 5.36985 5.44896 5.50371 5.62491 5.80497 5.84426 5.90408 6.01239 6.41553 6.50631 6.57196 6.73103 7.17190 7.33974 7.51414 7.95470 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.002687 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.156258 B =10417.798216 C =11158.348618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.013 3.987 3 Si 1.189 2.811 4 H -0.328 1.328 5 H -0.267 1.267 6 H -0.303 1.303 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.295 4.295 11 C -0.026 4.026 12 C -0.307 4.307 13 C 0.396 3.604 14 N -0.665 5.665 15 C 0.710 3.290 16 O -0.595 6.595 17 N -0.617 5.617 18 C 0.101 3.899 19 C -0.123 4.123 20 C 0.005 3.995 21 C 0.209 3.791 22 N -0.527 5.527 23 C -0.060 4.060 24 C -0.046 4.046 25 N -0.559 5.559 26 H 0.429 0.571 27 C -0.112 4.112 28 C 0.130 3.870 29 N -0.613 5.613 30 H 0.280 0.720 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.413 0.587 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.181 0.819 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.491 11.994 10.099 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.203 4.203 3 Si 1.021 2.979 4 H -0.262 1.262 5 H -0.195 1.195 6 H -0.232 1.232 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.134 3.866 10 C -0.318 4.318 11 C -0.051 4.051 12 C -0.331 4.331 13 C 0.164 3.836 14 N -0.315 5.315 15 C 0.412 3.588 16 O -0.474 6.474 17 N -0.354 5.354 18 C -0.021 4.021 19 C -0.162 4.162 20 C -0.015 4.015 21 C -0.056 4.056 22 N -0.247 5.247 23 C -0.207 4.207 24 C -0.180 4.180 25 N -0.163 5.163 26 H 0.269 0.731 27 C -0.151 4.151 28 C 0.008 3.992 29 N -0.339 5.339 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.252 0.748 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.198 0.802 41 H 0.224 0.776 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 20.495 14.153 9.229 26.562 hybrid contribution -0.685 -3.428 0.786 3.584 sum 19.810 10.724 10.015 24.653 Atomic orbital electron populations 1.70666 1.08448 1.32680 1.33419 1.28585 0.95614 1.08038 0.88092 0.81418 0.69909 0.67743 0.78782 1.26183 1.19463 1.23202 1.20705 0.91225 0.95981 1.46109 0.91402 1.18434 0.93367 0.87266 0.87499 1.21747 0.94954 0.98065 1.17005 1.21323 0.93464 0.97814 0.92450 1.21848 1.01635 0.91255 1.18397 1.18103 0.88073 0.85175 0.92268 1.42485 1.08888 1.12563 1.67548 1.15772 0.80579 0.83544 0.78902 1.90805 1.66972 1.39852 1.49767 1.47389 1.13359 1.15224 1.59393 1.22053 0.95652 0.90672 0.93758 1.22029 0.93866 1.02882 0.97405 1.19602 0.91849 0.99084 0.91013 1.23292 0.99084 0.95540 0.87676 1.70192 1.11401 1.19474 1.23660 1.22746 1.04717 1.03602 0.89651 1.23288 0.95528 0.99644 0.99574 1.43328 1.30808 1.32844 1.09343 0.73077 1.21861 0.99721 0.96758 0.96802 1.21630 0.77695 1.03064 0.96807 1.65931 1.08101 1.29416 1.30501 0.90886 0.86807 0.83977 0.83398 0.74764 0.87976 0.89877 0.91242 0.88189 0.87146 0.80200 0.77560 0.92184 0.89397 0.89934 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.83 13.65 21.84 0.30 -45.53 16 2 C 0.01 0.72 5.52 85.29 0.47 1.19 16 3 Si 1.19 55.82 25.62 68.60 1.76 57.58 16 4 H -0.33 -15.00 7.11 99.48 0.71 -14.29 16 5 H -0.27 -11.62 6.60 99.48 0.66 -10.96 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.51 -28.24 9.57 23.47 0.22 -28.01 16 8 H 0.07 3.84 8.05 -2.91 -0.02 3.82 16 9 C 0.26 13.62 6.40 40.21 0.26 13.88 16 10 C -0.30 -13.88 9.83 22.87 0.22 -13.66 16 11 C -0.03 -1.10 10.15 22.39 0.23 -0.87 16 12 C -0.31 -13.23 8.83 22.71 0.20 -13.03 16 13 C 0.40 17.49 7.51 133.24 1.00 18.49 16 14 N -0.66 -23.25 5.27 -322.14 -1.70 -24.95 16 15 C 0.71 22.45 8.14 179.05 1.46 23.90 16 16 O -0.60 -22.77 12.56 -3.95 -0.05 -22.82 16 17 N -0.62 -12.98 2.97 -836.09 -2.48 -15.46 16 18 C 0.10 1.43 6.37 86.51 0.55 1.98 16 19 C -0.12 -1.31 5.09 30.82 0.16 -1.15 16 20 C 0.00 0.06 2.62 -11.51 -0.03 0.03 16 21 C 0.21 3.32 6.87 138.13 0.95 4.27 16 22 N -0.53 -10.94 11.25 -188.13 -2.12 -13.05 16 23 C -0.06 -0.98 11.87 83.52 0.99 0.01 16 24 C -0.05 -0.53 12.04 83.09 1.00 0.47 16 25 N -0.56 -6.61 5.91 -186.26 -1.10 -7.71 16 26 H 0.43 3.13 8.19 -92.71 -0.76 2.37 16 27 C -0.11 -1.58 5.34 30.67 0.16 -1.41 16 28 C 0.13 2.24 6.44 86.36 0.56 2.80 16 29 N -0.61 -30.33 4.54 -186.37 -0.85 -31.18 16 30 H 0.28 15.04 8.72 -92.71 -0.81 14.24 16 31 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 33 H 0.15 6.25 5.33 -3.13 -0.02 6.23 16 34 H 0.41 12.45 6.42 -92.71 -0.60 11.86 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.25 5.74 -2.39 -0.01 1.24 16 37 H 0.07 0.75 7.49 -2.38 -0.02 0.73 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.78 7.00 -2.39 -0.02 1.77 16 45 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -73.57 363.19 1.77 -71.80 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.39 Total: 22.45 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 8.40 Total: 8.88 kcal Atomic # 7 Polarization: -129.94 SS G_CDS: -7.94 Total: -137.88 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 55.82 SS G_CDS: 1.76 Total: 57.58 kcal Total: -73.57 1.77 -71.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.610 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds