Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86808 * 119.99588 * 2 1 4 4 H 1.48497 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46906 * 300.00059 * 3 2 1 6 6 H 1.48500 * 109.47052 * 60.00139 * 3 2 1 7 7 C 1.40025 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00315 * 179.97438 * 7 2 1 9 9 C 1.41334 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.40613 * 119.78799 * 179.97438 * 9 7 2 11 11 C 1.38313 * 119.12830 * 179.70121 * 10 9 7 12 12 C 1.38690 * 118.66995 * 0.55815 * 11 10 9 13 13 C 1.39641 * 119.49608 * 359.48441 * 12 11 10 14 14 N 1.39252 * 119.57533 * 180.25381 * 13 12 11 15 15 C 1.34770 * 120.00237 * 174.88310 * 14 13 12 16 16 O 1.21574 * 120.00221 * 5.19970 * 15 14 13 17 17 N 1.34776 * 119.99962 * 185.20202 * 15 14 13 18 18 C 1.46936 * 120.62833 * 185.02782 * 17 15 14 19 19 C 1.52756 * 109.00405 * 233.58229 * 18 17 15 20 20 C 1.53040 * 109.38750 * 305.58672 * 19 18 17 21 21 C 1.53042 * 109.53680 * 61.23911 * 20 19 18 22 22 H 1.09008 * 109.49509 * 58.58893 * 21 20 19 23 23 C 1.50697 * 109.49882 * 178.68524 * 21 20 19 24 24 N 1.30504 * 125.64964 * 264.86521 * 23 21 20 25 25 C 1.34132 * 109.25624 * 179.97438 * 24 23 21 26 26 C 1.34670 * 108.01711 * 0.02562 * 25 24 23 27 27 N 1.35041 * 125.64886 * 84.55882 * 23 21 20 28 28 H 0.96996 * 126.39679 * 359.97438 * 27 23 21 29 29 C 1.46922 * 120.63226 * 5.30404 * 17 15 14 30 30 N 1.31931 * 120.85081 * 0.22580 * 13 12 11 31 31 H 0.97002 * 120.00599 * 359.97438 * 1 2 3 32 32 H 1.07992 * 120.43337 * 0.02562 * 10 9 7 33 33 H 1.07999 * 120.66357 * 180.29304 * 11 10 9 34 34 H 1.08001 * 120.24845 * 179.75375 * 12 11 10 35 35 H 0.97005 * 119.99436 * 354.87714 * 14 13 12 36 36 H 1.09002 * 109.58752 * 353.41706 * 18 17 15 37 37 H 1.08995 * 109.58853 * 113.84550 * 18 17 15 38 38 H 1.09008 * 109.56249 * 185.55187 * 19 18 17 39 39 H 1.09001 * 109.39303 * 65.51674 * 19 18 17 40 40 H 1.09000 * 109.45926 * 301.22492 * 20 19 18 41 41 H 1.08994 * 109.46171 * 181.26136 * 20 19 18 42 42 H 1.07993 * 125.98850 * 180.02562 * 25 24 23 43 43 H 1.07999 * 126.58849 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.58936 * 246.15477 * 29 17 15 45 45 H 1.08994 * 109.58564 * 6.44064 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.7013 1.3466 0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0077 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3011 -2.4366 0.0005 10 6 2.0087 -3.6517 0.0005 11 6 1.3034 -4.8415 0.0068 12 6 -0.0826 -4.7935 0.0011 13 6 -0.7276 -3.5550 0.0001 14 7 -2.1193 -3.5048 -0.0002 15 6 -2.7509 -2.3188 0.1029 16 8 -2.1093 -1.2862 0.1011 17 7 -4.0939 -2.2774 0.2082 18 6 -4.8054 -0.9918 0.2108 19 6 -5.7011 -0.9215 1.4462 20 6 -6.6170 -2.1472 1.4800 21 6 -5.7685 -3.4178 1.5681 22 1 -5.1473 -3.3791 2.4630 23 6 -6.6718 -4.6223 1.6339 24 7 -7.0627 -5.2211 2.7255 25 6 -7.8577 -6.2525 2.4038 26 6 -7.9629 -6.2946 1.0619 27 7 -7.2155 -5.2571 0.5732 28 1 -7.0971 -5.0229 -0.3605 29 6 -4.8739 -3.5167 0.3285 30 7 -0.0356 -2.4317 0.0002 31 1 -0.4851 0.8400 0.0004 32 1 3.0886 -3.6558 0.0010 33 1 1.8218 -5.7890 0.0117 34 1 -0.6587 -5.7070 0.0018 35 1 -2.6340 -4.3236 -0.0749 36 1 -4.0840 -0.1750 0.2372 37 1 -5.4185 -0.9116 -0.6867 38 1 -6.3066 -0.0159 1.4069 39 1 -5.0810 -0.9060 2.3425 40 1 -7.2197 -2.1753 0.5722 41 1 -7.2722 -2.0870 2.3489 42 1 -8.3304 -6.9302 3.0991 43 1 -8.5313 -7.0073 0.4828 44 1 -5.4928 -3.6466 -0.5593 45 1 -4.1978 -4.3655 0.4300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881153411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = 77.594074 kcal Electronic energy + Delta-G solvation = -29718.974061 eV Core-core repulsion = 25737.719199 eV Total energy + Delta-G solvation = -3981.254862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.04789 -41.44390 -39.89124 -38.29371 -35.98824 -34.93895 -34.03105 -33.48940 -32.80578 -32.18404 -30.70485 -29.29779 -27.53716 -26.33403 -24.79672 -23.80763 -23.17649 -22.44051 -21.93506 -21.29874 -20.33166 -19.77900 -18.95807 -18.46416 -17.94398 -16.62106 -16.32615 -16.28849 -16.10449 -16.04891 -15.76357 -15.55438 -15.18878 -14.96331 -14.65664 -14.61935 -14.51094 -14.31191 -14.15175 -13.71094 -13.67591 -13.41549 -12.89839 -12.71686 -12.53013 -12.41062 -12.30717 -12.02050 -11.84841 -11.72428 -11.68274 -11.51379 -10.99008 -10.97970 -10.87219 -10.80489 -9.88919 -9.55312 -9.27590 -9.10581 -8.78000 -8.01257 -6.39940 0.96488 1.14230 1.28503 1.40708 1.52713 1.55280 1.67144 2.18689 2.25271 2.28000 2.50922 2.89877 3.04194 3.38811 3.70470 3.71401 4.01593 4.08365 4.14603 4.20463 4.32358 4.35197 4.37875 4.53591 4.60040 4.67592 4.69920 4.75171 4.79125 4.91567 4.96488 4.97316 5.04048 5.05535 5.14447 5.20333 5.30160 5.36269 5.60986 5.72540 5.82830 5.84779 5.93322 6.00009 6.25507 6.40635 6.53001 6.82834 7.04627 7.12221 7.18872 7.95892 8.38035 8.59694 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003144 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.548972 B = 8903.386376 C =10388.449764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.464 4.464 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.330 4.330 11 C -0.033 4.033 12 C -0.349 4.349 13 C 0.365 3.635 14 N -0.663 5.663 15 C 0.662 3.338 16 O -0.508 6.508 17 N -0.628 5.628 18 C 0.129 3.871 19 C -0.125 4.125 20 C -0.096 4.096 21 C -0.009 4.009 22 H 0.078 0.922 23 C 0.209 3.791 24 N -0.532 5.532 25 C -0.063 4.063 26 C -0.034 4.034 27 N -0.553 5.553 28 H 0.433 0.567 29 C 0.120 3.880 30 N -0.506 5.506 31 H 0.269 0.731 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.412 0.588 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.181 0.819 43 H 0.216 0.784 44 H 0.094 0.906 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.092 -7.965 -1.852 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.217 4.217 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.495 4.495 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.353 4.353 11 C -0.057 4.057 12 C -0.374 4.374 13 C 0.125 3.875 14 N -0.315 5.315 15 C 0.362 3.638 16 O -0.376 6.376 17 N -0.369 5.369 18 C 0.006 3.994 19 C -0.163 4.163 20 C -0.134 4.134 21 C -0.031 4.031 22 H 0.096 0.904 23 C -0.056 4.056 24 N -0.252 5.252 25 C -0.210 4.210 26 C -0.169 4.169 27 N -0.158 5.158 28 H 0.274 0.726 29 C -0.004 4.004 30 N -0.225 5.225 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.198 0.802 43 H 0.232 0.768 44 H 0.112 0.888 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.067 -5.993 -1.019 20.967 hybrid contribution 0.585 -0.844 -0.866 1.344 sum -19.482 -6.837 -1.885 20.733 Atomic orbital electron populations 1.70556 1.07116 1.27806 1.24734 1.27046 0.96053 1.03950 0.94607 0.85280 0.79571 0.77247 0.78337 1.17835 1.19501 1.19719 1.19915 0.94396 0.90446 1.44742 0.89678 1.18897 0.87919 0.93421 0.88645 1.21809 0.99208 0.93826 1.20460 1.21007 0.93406 0.97354 0.93908 1.20885 0.95211 0.95453 1.25892 1.18838 0.84143 0.91102 0.93416 1.42608 1.03954 1.08876 1.76038 1.16620 0.82401 0.84831 0.79993 1.91369 1.63082 1.31613 1.51504 1.47352 1.03084 1.07895 1.78557 1.21419 0.94631 0.84465 0.98847 1.21798 0.97737 0.99409 0.97357 1.21472 0.96979 0.91474 1.03519 1.19851 0.93836 0.89753 0.99642 0.90370 1.22832 1.01402 0.98493 0.82829 1.70182 1.15723 1.10120 1.29174 1.22769 1.03436 0.99607 0.95223 1.23335 1.02126 0.95487 0.95921 1.43252 1.37783 1.24218 1.10525 0.72599 1.21674 0.94590 0.86570 0.97559 1.68656 1.07236 1.25221 1.21416 0.91993 0.87736 0.84518 0.85402 0.74918 0.91722 0.89585 0.88081 0.93454 0.89585 0.91178 0.80220 0.76771 0.88779 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.97 8.98 21.84 0.20 -39.78 16 2 C 0.01 0.51 5.50 85.29 0.47 0.98 16 3 Si 0.97 41.37 29.56 68.60 2.03 43.39 16 4 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.46 -26.91 9.14 23.47 0.21 -26.69 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.24 13.96 6.55 40.21 0.26 14.22 16 10 C -0.33 -17.01 9.83 22.87 0.22 -16.79 16 11 C -0.03 -1.45 10.15 22.40 0.23 -1.22 16 12 C -0.35 -15.30 9.95 22.72 0.23 -15.07 16 13 C 0.36 18.17 7.43 133.24 0.99 19.16 16 14 N -0.66 -26.62 5.25 -322.15 -1.69 -28.31 16 15 C 0.66 27.69 8.26 179.06 1.48 29.17 16 16 O -0.51 -27.01 11.51 -3.95 -0.05 -27.05 16 17 N -0.63 -18.22 2.98 -837.77 -2.50 -20.72 16 18 C 0.13 3.26 6.41 86.22 0.55 3.81 16 19 C -0.12 -2.50 6.06 30.53 0.19 -2.31 16 20 C -0.10 -1.61 5.15 30.62 0.16 -1.46 16 21 C -0.01 -0.19 2.81 -11.46 -0.03 -0.22 16 22 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 23 C 0.21 4.12 6.87 138.13 0.95 5.07 16 24 N -0.53 -13.27 11.25 -188.14 -2.12 -15.39 16 25 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 26 C -0.03 -0.41 12.04 83.09 1.00 0.59 16 27 N -0.55 -6.85 5.91 -186.27 -1.10 -7.95 16 28 H 0.43 2.62 8.02 -92.71 -0.74 1.87 16 29 C 0.12 2.37 5.47 86.36 0.47 2.84 16 30 N -0.51 -29.76 5.74 -186.37 -1.07 -30.83 16 31 H 0.27 14.81 8.29 -92.71 -0.77 14.04 16 32 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 33 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 34 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.41 12.58 6.29 -92.70 -0.58 12.00 16 36 H 0.06 2.13 6.99 -2.39 -0.02 2.12 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.09 1.20 7.19 -2.39 -0.02 1.18 16 45 H 0.08 1.57 5.74 -2.39 -0.01 1.56 16 Total: -1.00 -83.40 365.50 1.80 -81.60 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.28 Total: 33.12 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 8.37 Total: 11.91 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -8.28 Total: -142.97 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -83.40 1.80 -81.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.195 kcal (2) G-P(sol) polarization free energy of solvation -83.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds