Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86799 * 119.99859 * 2 1 4 4 H 1.48502 * 109.47250 * 270.00137 * 3 2 1 5 5 H 1.48506 * 109.46847 * 30.00003 * 3 2 1 6 6 H 1.48500 * 109.47150 * 149.99608 * 3 2 1 7 7 C 1.40023 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.41336 * 120.00453 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.79162 * 179.97438 * 9 7 2 11 11 C 1.38310 * 119.13257 * 179.97438 * 10 9 7 12 12 C 1.38691 * 118.67123 * 359.97438 * 11 10 9 13 13 C 1.39648 * 119.49374 * 0.02562 * 12 11 10 14 14 N 1.39246 * 119.57140 * 179.97438 * 13 12 11 15 15 C 1.34770 * 120.00382 * 18.13948 * 14 13 12 16 16 O 1.21575 * 119.99990 * 5.70313 * 15 14 13 17 17 N 1.34773 * 120.00179 * 185.97393 * 15 14 13 18 18 C 1.46928 * 120.63066 * 174.24335 * 17 15 14 19 19 C 1.53628 * 108.54203 * 126.37421 * 18 17 15 20 20 C 1.53039 * 109.24414 * 54.85279 * 19 18 17 21 21 C 1.53036 * 109.53973 * 298.51274 * 20 19 18 22 22 H 1.09003 * 109.49894 * 301.41496 * 21 20 19 23 23 N 1.46491 * 109.49892 * 181.31860 * 21 20 19 24 24 C 1.36886 * 126.39993 * 119.87830 * 23 21 20 25 25 C 1.34674 * 106.81707 * 179.84263 * 24 23 21 26 26 N 1.34125 * 108.01921 * 0.41796 * 25 24 23 27 27 C 1.30495 * 109.26259 * 359.73464 * 26 25 24 28 28 C 1.46930 * 120.63003 * 354.52584 * 17 15 14 29 29 N 1.31924 * 120.84851 * 0.27271 * 13 12 11 30 30 H 0.96998 * 120.00191 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.43869 * 359.97438 * 10 9 7 32 32 H 1.08003 * 120.67073 * 180.02562 * 11 10 9 33 33 H 1.07995 * 120.25271 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99534 * 198.13992 * 14 13 12 35 35 H 1.08996 * 109.58753 * 246.20169 * 18 17 15 36 36 H 1.08999 * 109.58788 * 6.63039 * 18 17 15 37 37 H 1.09007 * 109.62809 * 294.86189 * 19 18 17 38 38 H 1.08994 * 109.42980 * 174.72621 * 19 18 17 39 39 H 1.09004 * 109.45838 * 178.49462 * 20 19 18 40 40 H 1.08994 * 109.45613 * 58.53832 * 20 19 18 41 41 H 1.07997 * 126.59139 * 359.97346 * 24 23 21 42 42 H 1.07999 * 125.99018 * 180.11393 * 25 24 23 43 43 H 1.08001 * 125.65851 * 180.02562 * 27 26 25 44 44 H 1.08998 * 109.58708 * 353.37180 * 28 17 15 45 45 H 1.09001 * 109.58616 * 113.79690 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4403 0.7001 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4367 0.0005 10 6 2.0085 -3.6517 0.0005 11 6 1.3033 -4.8415 0.0011 12 6 -0.0828 -4.7935 0.0022 13 6 -0.7278 -3.5549 0.0021 14 7 -2.1194 -3.5048 0.0026 15 6 -2.8326 -4.5889 0.3665 16 8 -2.2643 -5.5754 0.7930 17 7 -4.1755 -4.5814 0.2526 18 6 -4.9567 -5.7956 0.5251 19 6 -6.0386 -5.4579 1.5622 20 6 -6.8698 -4.2762 1.0576 21 6 -5.9678 -3.0517 0.8869 22 1 -5.4981 -2.8102 1.8404 23 7 -6.7700 -1.9128 0.4339 24 6 -6.9281 -0.7199 1.0864 25 6 -7.7376 0.0380 0.3222 26 7 -8.0723 -0.6762 -0.7627 27 6 -7.4965 -1.8457 -0.7026 28 6 -4.8856 -3.3606 -0.1525 29 7 -0.0358 -2.4318 -0.0043 30 1 -0.4850 0.8400 -0.0004 31 1 3.0885 -3.6559 0.0001 32 1 1.8215 -5.7891 0.0015 33 1 -0.6588 -5.7070 0.0022 34 1 -2.5754 -2.6896 -0.2589 35 1 -5.4252 -6.1430 -0.3957 36 1 -4.3004 -6.5716 0.9190 37 1 -5.5681 -5.1937 2.5094 38 1 -6.6858 -6.3231 1.7058 39 1 -7.6556 -4.0507 1.7786 40 1 -7.3199 -4.5322 0.0985 41 1 -6.4867 -0.4395 2.0313 42 1 -8.0644 1.0427 0.5462 43 1 -7.5856 -2.6300 -1.4398 44 1 -4.1824 -2.5295 -0.2058 45 1 -5.3484 -3.5135 -1.1274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 96.719438 kcal Electronic energy + Delta-G solvation = -29450.315006 eV Core-core repulsion = 25469.889483 eV Total energy + Delta-G solvation = -3980.425524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.30572 -40.56401 -38.53792 -37.39353 -34.55725 -34.17055 -33.43697 -32.45758 -30.44632 -30.11947 -29.20840 -29.04415 -25.95195 -25.29636 -24.05259 -22.58697 -21.67120 -21.59204 -21.13565 -20.43160 -19.30260 -18.45512 -17.55826 -17.42439 -16.48710 -15.74889 -15.35895 -15.33445 -15.04367 -14.71488 -14.70977 -14.45432 -14.16907 -13.98907 -13.90831 -13.62353 -13.38844 -13.27779 -13.01069 -12.82011 -12.35060 -12.07741 -12.01898 -11.54631 -11.40618 -11.27467 -11.20239 -11.08658 -10.92986 -10.67728 -10.13917 -10.10873 -9.95852 -9.88669 -9.35499 -9.12685 -8.79023 -8.64867 -8.06894 -7.71911 -7.12217 -6.44834 -4.53734 1.89744 2.29989 2.58624 2.80744 2.92008 3.06732 3.07007 3.10060 3.21714 3.52648 3.92263 3.93807 4.10209 4.21456 4.44516 4.49547 4.59462 4.67973 4.75809 4.84580 4.98864 5.06245 5.26980 5.28077 5.35806 5.38823 5.47344 5.57137 5.68590 5.83458 5.88136 6.08542 6.11288 6.25712 6.35857 6.59735 6.65221 6.77654 6.87578 6.93106 7.01343 7.13552 7.45362 7.54033 7.86089 7.94037 7.96082 8.10856 8.31059 8.65951 8.77949 8.95471 10.01033 10.27910 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009883 B = 0.003553 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.559850 B = 7878.463554 C =10409.951373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.435 4.435 8 H 0.085 0.915 9 C 0.281 3.719 10 C -0.290 4.290 11 C -0.049 4.049 12 C -0.313 4.313 13 C 0.371 3.629 14 N -0.657 5.657 15 C 0.712 3.288 16 O -0.561 6.561 17 N -0.628 5.628 18 C 0.126 3.874 19 C -0.131 4.131 20 C -0.125 4.125 21 C 0.122 3.878 22 H 0.107 0.893 23 N -0.452 5.452 24 C -0.051 4.051 25 C -0.031 4.031 26 N -0.495 5.495 27 C 0.181 3.819 28 C 0.105 3.895 29 N -0.509 5.509 30 H 0.270 0.730 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.201 0.799 44 H 0.091 0.909 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 -4.785 1.791 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.313 4.313 11 C -0.073 4.073 12 C -0.338 4.338 13 C 0.136 3.864 14 N -0.306 5.306 15 C 0.414 3.586 16 O -0.437 6.437 17 N -0.368 5.368 18 C 0.003 3.997 19 C -0.170 4.170 20 C -0.164 4.164 21 C 0.017 3.983 22 H 0.125 0.875 23 N -0.135 5.135 24 C -0.183 4.183 25 C -0.179 4.179 26 N -0.213 5.213 27 C -0.101 4.101 28 C -0.020 4.020 29 N -0.228 5.228 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.239 0.761 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.191 0.809 42 H 0.186 0.814 43 H 0.217 0.783 44 H 0.109 0.891 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.433 -4.415 1.499 17.081 hybrid contribution 1.075 0.322 0.592 1.269 sum -15.358 -4.092 2.091 16.031 Atomic orbital electron populations 1.70111 1.07242 1.27498 1.29737 1.26029 0.94875 1.01002 0.93349 0.86343 0.80506 0.80833 0.79222 1.19417 1.20208 1.18533 1.19569 0.94252 0.89196 1.43652 0.89651 1.18161 0.86274 0.92125 0.88035 1.21709 0.98791 0.93477 1.17295 1.20810 0.93656 0.96632 0.96243 1.21632 0.94594 0.97596 1.20011 1.18213 0.81841 0.91181 0.95175 1.42479 1.05704 1.14273 1.68144 1.15634 0.80624 0.83679 0.78704 1.90836 1.67788 1.34065 1.50996 1.47208 1.04371 1.11440 1.73755 1.21623 0.92953 0.86908 0.98220 1.22009 0.97475 0.97938 0.99621 1.21898 0.97890 0.93612 1.02961 1.21868 0.91674 0.85110 0.99656 0.87535 1.45596 1.36601 1.12903 1.18432 1.22810 1.06723 0.86980 1.01819 1.22292 1.02006 1.00744 0.92845 1.70298 1.24244 1.03396 1.23404 1.24880 0.96130 0.98202 0.90920 1.21870 0.94727 0.88489 0.96940 1.68004 1.08242 1.24496 1.22017 0.91876 0.88214 0.88317 0.84897 0.76110 0.91349 0.88010 0.90837 0.89675 0.90697 0.90630 0.80938 0.81425 0.78265 0.89095 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.68 11.46 55.55 0.64 -18.05 16 2 C 0.07 1.80 5.50 -17.35 -0.10 1.70 16 3 Si 0.91 18.38 29.56 -169.99 -5.02 13.36 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.43 -11.53 9.14 -37.74 -0.34 -11.88 16 8 H 0.09 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.28 7.68 6.55 -85.00 -0.56 7.12 16 10 C -0.29 -7.25 9.83 -38.67 -0.38 -7.63 16 11 C -0.05 -1.15 10.15 -39.39 -0.40 -1.55 16 12 C -0.31 -7.62 8.84 -38.89 -0.34 -7.96 16 13 C 0.37 9.13 7.52 -154.99 -1.16 7.96 16 14 N -0.66 -13.12 5.32 -15.79 -0.08 -13.20 16 15 C 0.71 12.68 8.14 -86.93 -0.71 11.97 16 16 O -0.56 -11.70 12.53 5.30 0.07 -11.64 16 17 N -0.63 -7.78 2.97 -178.23 -0.53 -8.30 16 18 C 0.13 1.19 6.47 -3.48 -0.02 1.17 16 19 C -0.13 -0.92 6.10 -26.38 -0.16 -1.08 16 20 C -0.13 -0.83 5.20 -26.69 -0.14 -0.97 16 21 C 0.12 1.03 3.01 -67.82 -0.20 0.83 16 22 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 23 N -0.45 -4.33 2.62 -111.33 -0.29 -4.62 16 24 C -0.05 -0.51 11.55 -16.56 -0.19 -0.70 16 25 C -0.03 -0.35 11.87 -17.81 -0.21 -0.57 16 26 N -0.50 -6.35 11.25 -14.66 -0.16 -6.51 16 27 C 0.18 1.85 11.49 -90.37 -1.04 0.82 16 28 C 0.10 1.06 5.78 -3.71 -0.02 1.04 16 29 N -0.51 -13.78 7.89 -10.26 -0.08 -13.86 16 30 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 31 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 32 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 33 H 0.13 3.19 5.28 -52.56 -0.28 2.91 16 34 H 0.40 7.34 6.31 -40.82 -0.26 7.08 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.15 7.00 -51.93 -0.36 0.79 16 37 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.44 7.98 -51.93 -0.41 0.02 16 41 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.09 1.07 5.65 -51.93 -0.29 0.78 16 45 H 0.08 0.68 7.81 -51.93 -0.41 0.27 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -33.20 369.13 -11.67 -44.87 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.78 Total: 12.10 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -5.98 Total: 0.29 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.51 Total: -64.54 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.07 Total: -11.64 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.20 -11.67 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.590 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds