Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47736 * 240.00567 * 3 2 1 5 5 H 1.48510 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47221 * 120.00588 * 3 2 1 7 7 C 1.38809 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00553 * 180.02562 * 9 7 2 11 11 C 1.53948 * 113.58544 * 205.00080 * 10 9 7 12 12 C 1.52903 * 86.78539 * 220.66459 * 11 10 9 13 13 C 1.52908 * 88.04577 * 24.89847 * 12 11 10 14 14 C 1.52915 * 121.13985 * 150.61509 * 12 11 10 15 15 C 1.53955 * 86.77826 * 100.82235 * 14 12 11 16 16 N 1.46505 * 113.57483 * 139.33939 * 15 14 12 17 17 C 1.34772 * 119.99644 * 154.99697 * 16 15 14 18 18 O 1.21565 * 120.00385 * 359.97438 * 17 16 15 19 19 C 1.47771 * 119.99824 * 180.02562 * 17 16 15 20 20 C 1.39635 * 121.07410 * 359.83884 * 19 17 16 21 21 C 1.38332 * 119.37599 * 179.70804 * 20 19 17 22 22 N 1.31729 * 121.54960 * 0.25673 * 21 20 19 23 23 C 1.32116 * 121.94301 * 359.97438 * 22 21 20 24 24 N 1.37947 * 133.80584 * 180.02562 * 23 22 21 25 25 H 0.96994 * 126.35851 * 359.92863 * 24 23 22 26 26 C 1.35986 * 107.28408 * 179.97438 * 24 23 22 27 27 N 1.30282 * 110.05970 * 0.02562 * 26 24 23 28 28 C 1.34655 * 109.66777 * 359.97438 * 27 26 24 29 29 C 1.52907 * 121.14037 * 259.17959 * 12 11 10 30 30 H 0.97005 * 119.99664 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99382 * 0.02562 * 9 7 2 32 32 H 1.09000 * 112.87833 * 336.14652 * 10 9 7 33 33 H 1.08998 * 113.66353 * 106.18966 * 11 10 9 34 34 H 1.09000 * 113.74585 * 335.14560 * 11 10 9 35 35 H 1.08997 * 113.66383 * 89.56878 * 13 12 11 36 36 H 1.09000 * 113.66665 * 220.63149 * 13 12 11 37 37 H 1.08995 * 113.65526 * 346.35164 * 14 12 11 38 38 H 1.08996 * 113.66281 * 215.29328 * 14 12 11 39 39 H 1.08996 * 113.57573 * 270.04701 * 15 14 12 40 40 H 0.97003 * 120.00157 * 334.99968 * 16 15 14 41 41 H 1.08002 * 120.31213 * 359.96376 * 20 19 17 42 42 H 1.08003 * 119.22748 * 180.23345 * 21 20 19 43 43 H 1.07998 * 124.97226 * 180.02562 * 26 24 23 44 44 H 1.08999 * 113.66686 * 144.70220 * 29 12 11 45 45 H 1.09004 * 113.66028 * 13.65029 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.2586 -4.8295 -0.5968 12 6 1.8333 -5.6835 0.5338 13 6 2.0030 -4.3997 1.3468 14 6 1.0599 -6.8778 1.0942 15 6 1.9762 -7.7650 0.2319 16 7 2.4115 -8.9895 0.9081 17 6 2.7662 -10.0694 0.1840 18 8 2.7246 -10.0276 -1.0302 19 6 3.2047 -11.3048 0.8661 20 6 3.2632 -11.3769 2.2594 21 6 3.6730 -12.5530 2.8614 22 7 4.0153 -13.6081 2.1509 23 6 3.9855 -13.6010 0.8301 24 7 4.2824 -14.5391 -0.1368 25 1 4.5927 -15.4451 0.0171 26 6 4.0603 -13.9575 -1.3457 27 7 3.6497 -12.7317 -1.1832 28 6 3.5810 -12.4473 0.1311 29 6 3.0116 -6.6273 0.2913 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0653 -3.5645 -0.4067 33 1 1.5973 -5.1306 -1.5881 34 1 0.1781 -4.6980 -0.5399 35 1 1.1319 -4.1460 1.9509 36 1 2.9364 -4.3574 1.9082 37 1 0.0137 -6.9031 0.7897 38 1 1.1943 -7.0219 2.1662 39 1 1.5870 -7.9503 -0.7692 40 1 2.4443 -9.0231 1.8770 41 1 2.9870 -10.5238 2.8614 42 1 3.7137 -12.6073 3.9393 43 1 4.2032 -14.4408 -2.3008 44 1 3.6945 -6.7010 1.1377 45 1 3.5245 -6.4527 -0.6546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963897669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = 88.741131 kcal Electronic energy + Delta-G solvation = -27927.662052 eV Core-core repulsion = 23946.890563 eV Total energy + Delta-G solvation = -3980.771489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.42670 -41.66955 -40.35975 -39.11973 -37.22175 -35.29402 -34.76987 -33.71902 -32.25324 -31.24662 -30.75927 -26.75140 -26.70166 -26.39856 -25.82717 -24.22869 -23.97328 -22.70898 -21.80384 -21.45206 -19.78890 -19.33968 -18.73941 -18.52425 -18.23541 -17.24338 -16.91013 -16.80478 -16.34752 -15.99236 -15.96390 -15.78476 -15.58658 -15.35862 -15.03897 -14.82143 -14.34858 -13.73508 -13.72374 -13.60997 -13.50566 -13.43725 -13.07351 -12.92916 -12.78673 -12.36276 -12.27552 -12.16962 -12.07898 -11.93411 -11.87896 -11.44728 -11.14082 -11.03512 -10.78079 -10.73281 -10.23787 -10.12937 -9.89593 -9.59481 -8.94919 -7.92775 -5.20663 -0.68864 0.10253 1.47848 1.50886 1.56949 1.58295 1.68860 1.92095 2.03417 2.57992 2.81041 3.14073 3.38197 3.42421 3.52057 3.55689 3.58745 3.70941 3.72060 3.86997 4.00544 4.02495 4.21880 4.30606 4.35849 4.42304 4.55299 4.63966 4.66961 4.81055 4.82975 4.85590 4.96421 5.01796 5.03587 5.06955 5.12156 5.15303 5.28906 5.46274 5.50471 5.57427 5.64238 5.73403 6.18842 6.29624 6.53500 6.73799 6.80824 7.20976 7.35210 8.13585 8.36550 9.30348 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032606 B = 0.001718 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.534791 B =16297.984852 C =16620.619096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.729 5.729 10 C 0.145 3.855 11 C -0.125 4.125 12 C -0.089 4.089 13 C -0.135 4.135 14 C -0.114 4.114 15 C 0.130 3.870 16 N -0.695 5.695 17 C 0.551 3.449 18 O -0.556 6.556 19 C -0.069 4.069 20 C -0.126 4.126 21 C 0.133 3.867 22 N -0.478 5.478 23 C 0.213 3.787 24 N -0.574 5.574 25 H 0.447 0.553 26 C 0.296 3.704 27 N -0.529 5.529 28 C 0.021 3.979 29 C -0.120 4.120 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.417 0.583 41 H 0.188 0.812 42 H 0.216 0.784 43 H 0.274 0.726 44 H 0.104 0.896 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -34.811 7.527 36.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.366 5.366 10 C 0.036 3.964 11 C -0.164 4.164 12 C -0.090 4.090 13 C -0.175 4.175 14 C -0.152 4.152 15 C 0.025 3.975 16 N -0.347 5.347 17 C 0.337 3.663 18 O -0.434 6.434 19 C -0.082 4.082 20 C -0.148 4.148 21 C -0.034 4.034 22 N -0.192 5.192 23 C -0.024 4.024 24 N -0.190 5.190 25 H 0.290 0.710 26 C 0.010 3.990 27 N -0.249 5.249 28 C -0.102 4.102 29 C -0.158 4.158 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.256 0.744 41 H 0.205 0.795 42 H 0.233 0.767 43 H 0.289 0.711 44 H 0.123 0.877 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.020 -34.814 6.352 36.520 hybrid contribution -0.048 0.984 0.165 0.999 sum 8.972 -33.830 6.518 35.601 Atomic orbital electron populations 1.69814 1.06576 1.26045 1.59639 1.25568 0.96406 1.01098 1.03914 0.85219 0.77190 0.79252 0.78147 1.20598 1.22196 1.20299 1.19672 0.91484 0.85511 1.40936 0.90716 1.42590 1.05337 1.01054 1.87648 1.21926 0.95002 0.83817 0.95670 1.23093 0.99912 0.95921 0.97451 1.21869 0.97829 0.92146 0.97191 1.23378 1.01111 0.95128 0.97932 1.23161 0.98697 0.92512 1.00841 1.22392 0.96126 0.81521 0.97465 1.45741 1.66607 1.11631 1.10751 1.18379 0.77440 0.83618 0.86825 1.90832 1.53527 1.83807 1.15229 1.19809 1.01918 0.92095 0.94359 1.22634 0.98773 1.01759 0.91649 1.23314 0.92691 0.85797 1.01557 1.66336 1.16585 1.32382 1.03849 1.19221 1.03466 0.90211 0.89544 1.42963 1.56219 1.15193 1.04619 0.70968 1.26685 0.92843 0.88355 0.91156 1.70334 1.22057 1.15409 1.17069 1.19648 1.04148 0.95037 0.91412 1.23182 0.96228 0.93714 1.02683 0.94085 0.79476 0.91438 0.91939 0.90650 0.91325 0.91699 0.90620 0.86837 0.89019 0.74407 0.79530 0.76734 0.71069 0.87739 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.24 -13.79 9.97 84.03 0.84 -12.95 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -37.47 5.40 -319.93 -1.73 -39.20 16 10 C 0.15 5.81 4.48 45.63 0.20 6.01 16 11 C -0.12 -4.16 7.59 30.88 0.23 -3.93 16 12 C -0.09 -2.35 1.11 -52.32 -0.06 -2.40 16 13 C -0.13 -4.37 7.64 30.89 0.24 -4.14 16 14 C -0.11 -2.29 7.59 30.89 0.23 -2.05 16 15 C 0.13 2.87 4.24 45.63 0.19 3.06 16 16 N -0.69 -12.60 5.31 -442.46 -2.35 -14.95 16 17 C 0.55 13.98 7.79 86.77 0.68 14.66 16 18 O -0.56 -19.83 15.79 -3.92 -0.06 -19.89 16 19 C -0.07 -1.44 5.93 -19.75 -0.12 -1.56 16 20 C -0.13 -1.34 9.60 22.63 0.22 -1.12 16 21 C 0.13 1.28 11.14 84.73 0.94 2.22 16 22 N -0.48 -7.50 10.35 -192.83 -2.00 -9.50 16 23 C 0.21 3.87 8.46 133.92 1.13 5.00 16 24 N -0.57 -6.07 6.23 -195.71 -1.22 -7.29 16 25 H 0.45 1.25 8.96 -92.71 -0.83 0.42 16 26 C 0.30 3.57 12.97 180.02 2.34 5.91 16 27 N -0.53 -12.97 10.63 -191.51 -2.04 -15.00 16 28 C 0.02 0.50 6.85 40.01 0.27 0.78 16 29 C -0.12 -2.78 7.64 30.88 0.24 -2.54 16 30 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 31 H 0.37 20.55 7.92 -92.71 -0.73 19.82 16 32 H 0.07 2.75 8.10 -2.39 -0.02 2.73 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.61 8.12 -2.39 -0.02 2.59 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.11 1.67 8.12 -2.39 -0.02 1.65 16 39 H 0.09 2.55 7.46 -2.39 -0.02 2.53 16 40 H 0.42 4.07 6.87 -92.71 -0.64 3.44 16 41 H 0.19 0.35 6.53 -2.91 -0.02 0.33 16 42 H 0.22 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.27 0.06 8.06 -2.91 -0.02 0.04 16 44 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -88.36 379.33 -0.17 -88.53 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -1.13 Total: 25.51 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 8.05 Total: 2.88 kcal Atomic # 7 Polarization: -136.70 SS G_CDS: -9.05 Total: -145.74 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -88.36 -0.17 -88.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963897669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.267 kcal (2) G-P(sol) polarization free energy of solvation -88.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds