Wall clock time and date at job start Sat Apr 11 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00270 * 2 1 4 4 H 1.48505 * 109.46854 * 269.99532 * 3 2 1 5 5 H 1.48497 * 109.47066 * 29.99506 * 3 2 1 6 6 H 1.48501 * 109.47260 * 149.99990 * 3 2 1 7 7 C 1.38814 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00298 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00356 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.58143 * 204.99658 * 10 9 7 12 12 C 1.52902 * 86.78256 * 220.66173 * 11 10 9 13 13 C 1.52910 * 88.04342 * 24.89713 * 12 11 10 14 14 C 1.52907 * 121.13836 * 150.61600 * 12 11 10 15 15 C 1.53948 * 86.78246 * 100.82240 * 14 12 11 16 16 N 1.46506 * 113.58345 * 139.33640 * 15 14 12 17 17 C 1.34772 * 120.00020 * 154.99665 * 16 15 14 18 18 O 1.21583 * 120.00409 * 0.02562 * 17 16 15 19 19 C 1.47508 * 119.99830 * 180.02562 * 17 16 15 20 20 C 1.36885 * 120.61083 * 180.02562 * 19 17 16 21 21 C 1.40127 * 119.25846 * 180.02562 * 20 19 17 22 22 N 1.31144 * 120.46370 * 359.97438 * 21 20 19 23 23 C 1.33704 * 121.18342 * 0.02562 * 22 21 20 24 24 C 1.39072 * 132.55624 * 180.02562 * 23 22 21 25 25 C 1.38500 * 107.66783 * 179.97438 * 24 23 22 26 26 N 1.31526 * 109.03665 * 0.02562 * 25 24 23 27 27 N 1.37286 * 120.63971 * 0.02562 * 23 22 21 28 28 C 1.52913 * 121.14030 * 259.17929 * 12 11 10 29 29 H 0.97001 * 119.99807 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99782 * 359.97438 * 9 7 2 31 31 H 1.09004 * 112.87629 * 336.13776 * 10 9 7 32 32 H 1.09004 * 113.66114 * 106.18653 * 11 10 9 33 33 H 1.09001 * 113.74655 * 335.14259 * 11 10 9 34 34 H 1.09003 * 113.66200 * 89.57718 * 13 12 11 35 35 H 1.09006 * 113.66429 * 220.62603 * 13 12 11 36 36 H 1.08994 * 113.66024 * 346.34927 * 14 12 11 37 37 H 1.09004 * 113.66419 * 215.29404 * 14 12 11 38 38 H 1.08997 * 113.58270 * 270.04960 * 15 14 12 39 39 H 0.97003 * 119.99786 * 335.00214 * 16 15 14 40 40 H 1.07999 * 120.37131 * 0.04458 * 20 19 17 41 41 H 1.08000 * 119.76977 * 179.97438 * 21 20 19 42 42 H 1.07997 * 126.16516 * 359.97438 * 24 23 22 43 43 H 1.07999 * 125.47569 * 179.97438 * 25 24 23 44 44 H 1.08997 * 113.66630 * 144.70102 * 28 12 11 45 45 H 1.09007 * 113.65945 * 13.64860 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.2582 -4.8296 -0.5957 12 6 1.8330 -5.6836 0.5349 13 6 2.0029 -4.3997 1.3478 14 6 1.0597 -6.8777 1.0953 15 6 1.9758 -7.7650 0.2330 16 7 2.4111 -8.9896 0.9091 17 6 2.7657 -10.0695 0.1850 18 8 2.7248 -10.0274 -1.0294 19 6 3.2036 -11.3027 0.8658 20 6 3.5670 -12.4067 0.1427 21 6 3.9779 -13.5633 0.8186 22 7 4.0150 -13.5897 2.1292 23 6 3.6641 -12.5220 2.8534 24 6 3.6143 -12.2900 4.2237 25 6 3.1729 -10.9911 4.4144 26 7 2.9562 -10.4353 3.2422 27 7 3.2532 -11.3647 2.2397 28 6 3.0113 -6.6275 0.2923 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 3.0651 -3.5647 -0.4057 32 1 1.5968 -5.1307 -1.5871 33 1 0.1777 -4.6980 -0.5386 34 1 1.1319 -4.1460 1.9521 35 1 2.9364 -4.3575 1.9091 36 1 0.0134 -6.9031 0.7910 37 1 1.1941 -7.0218 2.1674 38 1 1.5866 -7.9504 -0.7681 39 1 2.4441 -9.0232 1.8780 40 1 3.5377 -12.3864 -0.9367 41 1 4.2660 -14.4392 0.2563 42 1 3.8731 -12.9955 4.9994 43 1 3.0290 -10.5121 5.3716 44 1 3.6943 -6.7012 1.1385 45 1 3.5241 -6.4529 -0.6537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963941102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:25 Heat of formation + Delta-G solvation = 149.723558 kcal Electronic energy + Delta-G solvation = -28343.391095 eV Core-core repulsion = 24365.264003 eV Total energy + Delta-G solvation = -3978.127093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.89365 -40.67087 -39.52347 -38.44095 -35.98987 -34.72418 -33.63581 -32.16108 -31.57990 -29.68066 -29.55636 -26.44818 -25.81879 -25.24154 -24.26490 -23.90348 -23.22427 -21.81864 -21.10121 -20.05027 -19.06619 -17.99673 -17.75783 -17.41610 -16.98905 -16.75156 -16.45228 -15.85435 -15.37787 -15.02224 -14.92464 -14.76354 -14.31994 -14.10859 -14.02267 -13.56739 -13.43898 -13.21334 -12.83966 -12.63447 -12.48781 -12.20890 -11.81451 -11.72569 -11.66510 -11.35896 -11.00203 -10.94311 -10.86710 -10.71617 -10.46453 -10.24359 -10.10285 -10.05597 -9.81321 -9.72550 -9.41171 -9.22231 -8.85396 -8.52343 -6.94397 -5.77298 -3.05629 -0.44912 0.26441 1.35275 1.89173 2.39957 2.52472 2.93506 3.26115 3.43364 3.47950 3.48601 3.50213 3.93064 4.29327 4.44929 4.51261 4.55859 4.64131 4.67067 4.75368 4.83512 4.85633 4.95099 5.22400 5.38214 5.38820 5.41203 5.50767 5.71349 5.75301 5.76285 5.87396 5.90915 5.94892 5.97262 6.00620 6.16788 6.21345 6.36085 6.39008 6.43377 6.64295 6.76940 6.92479 6.97418 7.12864 7.17447 7.69283 7.70633 8.41584 9.52565 10.11313 10.45743 11.45196 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.001916 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.776337 B =14611.303806 C =15187.232152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.169 3.831 11 C -0.128 4.128 12 C -0.101 4.101 13 C -0.148 4.148 14 C -0.128 4.128 15 C 0.117 3.883 16 N -0.694 5.694 17 C 0.556 3.444 18 O -0.517 6.517 19 C 0.143 3.857 20 C -0.153 4.153 21 C 0.178 3.822 22 N -0.447 5.447 23 C 0.255 3.745 24 C -0.252 4.252 25 C 0.099 3.901 26 N -0.321 5.321 27 N -0.304 5.304 28 C -0.122 4.122 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.417 0.583 40 H 0.182 0.818 41 H 0.191 0.809 42 H 0.167 0.833 43 H 0.204 0.796 44 H 0.084 0.916 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 -30.551 5.557 31.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.057 3.943 11 C -0.167 4.167 12 C -0.102 4.102 13 C -0.189 4.189 14 C -0.166 4.166 15 C 0.013 3.987 16 N -0.348 5.348 17 C 0.339 3.661 18 O -0.392 6.392 19 C 0.025 3.975 20 C -0.178 4.178 21 C -0.007 4.007 22 N -0.158 5.158 23 C 0.027 3.973 24 C -0.283 4.283 25 C -0.077 4.077 26 N -0.147 5.147 27 N -0.079 5.079 28 C -0.161 4.161 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.259 0.741 40 H 0.199 0.801 41 H 0.208 0.792 42 H 0.184 0.816 43 H 0.221 0.779 44 H 0.102 0.898 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.743 -29.798 4.844 30.933 hybrid contribution 0.179 0.758 0.557 0.958 sum 6.922 -29.040 5.402 30.338 Atomic orbital electron populations 1.69658 1.05119 1.25678 1.57660 1.24763 0.95534 0.97765 1.02974 0.86190 0.78663 0.83831 0.77514 1.21715 1.21787 1.20757 1.19310 0.91071 0.84261 1.42661 0.91129 1.42416 1.05739 0.99907 1.87055 1.21534 0.95219 0.84821 0.92753 1.23220 1.00695 0.96674 0.96153 1.22068 0.96082 0.92376 0.99713 1.23645 1.01163 0.94349 0.99766 1.23176 0.99003 0.94927 0.99533 1.22845 0.96878 0.80852 0.98119 1.46452 1.64245 1.12131 1.12005 1.17580 0.79023 0.82438 0.87039 1.90873 1.53542 1.82756 1.12049 1.20905 0.99635 0.97784 0.79181 1.22230 1.00599 0.91307 1.03662 1.23509 0.90402 0.97578 0.89222 1.67991 1.15247 1.24548 1.08037 1.20798 0.99205 0.82825 0.94467 1.21083 1.16638 0.98916 0.91668 1.23868 0.94022 0.93185 0.96653 1.77314 1.29926 1.12400 0.95059 1.47408 1.43082 1.12459 1.04911 1.23134 0.96388 0.94021 1.02554 0.93502 0.78112 0.90783 0.92018 0.89945 0.90207 0.92681 0.90611 0.89667 0.86455 0.74111 0.80065 0.79244 0.81553 0.77927 0.89774 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.94 5.40 -52.47 -0.28 -18.23 16 10 C 0.17 3.35 4.48 -66.95 -0.30 3.05 16 11 C -0.13 -2.11 7.59 -26.29 -0.20 -2.31 16 12 C -0.10 -1.44 1.11 -154.72 -0.17 -1.61 16 13 C -0.15 -2.54 7.64 -26.28 -0.20 -2.74 16 14 C -0.13 -1.56 7.59 -26.28 -0.20 -1.76 16 15 C 0.12 1.42 4.24 -66.95 -0.28 1.14 16 16 N -0.69 -8.08 5.35 -53.90 -0.29 -8.37 16 17 C 0.56 6.65 7.79 -12.48 -0.10 6.55 16 18 O -0.52 -7.21 15.96 5.29 0.08 -7.12 16 19 C 0.14 1.43 6.82 -81.98 -0.56 0.87 16 20 C -0.15 -1.04 9.61 -39.36 -0.38 -1.42 16 21 C 0.18 0.98 11.26 -17.14 -0.19 0.79 16 22 N -0.45 -3.80 10.44 -12.24 -0.13 -3.93 16 23 C 0.25 2.47 7.93 -155.56 -1.23 1.24 16 24 C -0.25 -1.98 10.91 -39.18 -0.43 -2.41 16 25 C 0.10 0.72 11.94 -17.59 -0.21 0.51 16 26 N -0.32 -3.19 9.92 30.46 0.30 -2.89 16 27 N -0.30 -3.14 3.94 -8.87 -0.03 -3.17 16 28 C -0.12 -1.57 7.64 -26.28 -0.20 -1.77 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.38 10.25 7.92 -40.82 -0.32 9.92 16 31 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 38 H 0.12 1.53 7.46 -51.93 -0.39 1.14 16 39 H 0.42 4.65 5.75 -40.82 -0.23 4.41 16 40 H 0.18 0.88 7.65 -52.49 -0.40 0.48 16 41 H 0.19 0.19 8.06 -52.49 -0.42 -0.23 16 42 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.20 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -34.13 379.25 -9.79 -43.92 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.96 Total: 11.44 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -4.90 Total: -7.29 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 0.29 Total: -64.11 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.08 Total: -7.12 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.13 -9.79 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963941102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.643 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds