Wall clock time and date at job start Sat Apr 11 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00270 * 2 1 4 4 H 1.48505 * 109.46854 * 269.99532 * 3 2 1 5 5 H 1.48497 * 109.47066 * 29.99506 * 3 2 1 6 6 H 1.48501 * 109.47260 * 149.99990 * 3 2 1 7 7 C 1.38814 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00298 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00356 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.58143 * 204.99658 * 10 9 7 12 12 C 1.52902 * 86.78256 * 220.66173 * 11 10 9 13 13 C 1.52910 * 88.04342 * 24.89713 * 12 11 10 14 14 C 1.52907 * 121.13836 * 150.61600 * 12 11 10 15 15 C 1.53948 * 86.78246 * 100.82240 * 14 12 11 16 16 N 1.46506 * 113.58345 * 139.33640 * 15 14 12 17 17 C 1.34772 * 120.00020 * 154.99665 * 16 15 14 18 18 O 1.21583 * 120.00409 * 0.02562 * 17 16 15 19 19 C 1.47508 * 119.99830 * 180.02562 * 17 16 15 20 20 C 1.36885 * 120.61083 * 180.02562 * 19 17 16 21 21 C 1.40127 * 119.25846 * 180.02562 * 20 19 17 22 22 N 1.31144 * 120.46370 * 359.97438 * 21 20 19 23 23 C 1.33704 * 121.18342 * 0.02562 * 22 21 20 24 24 C 1.39072 * 132.55624 * 180.02562 * 23 22 21 25 25 C 1.38500 * 107.66783 * 179.97438 * 24 23 22 26 26 N 1.31526 * 109.03665 * 0.02562 * 25 24 23 27 27 N 1.37286 * 120.63971 * 0.02562 * 23 22 21 28 28 C 1.52913 * 121.14030 * 259.17929 * 12 11 10 29 29 H 0.97001 * 119.99807 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99782 * 359.97438 * 9 7 2 31 31 H 1.09004 * 112.87629 * 336.13776 * 10 9 7 32 32 H 1.09004 * 113.66114 * 106.18653 * 11 10 9 33 33 H 1.09001 * 113.74655 * 335.14259 * 11 10 9 34 34 H 1.09003 * 113.66200 * 89.57718 * 13 12 11 35 35 H 1.09006 * 113.66429 * 220.62603 * 13 12 11 36 36 H 1.08994 * 113.66024 * 346.34927 * 14 12 11 37 37 H 1.09004 * 113.66419 * 215.29404 * 14 12 11 38 38 H 1.08997 * 113.58270 * 270.04960 * 15 14 12 39 39 H 0.97003 * 119.99786 * 335.00214 * 16 15 14 40 40 H 1.07999 * 120.37131 * 0.04458 * 20 19 17 41 41 H 1.08000 * 119.76977 * 179.97438 * 21 20 19 42 42 H 1.07997 * 126.16516 * 359.97438 * 24 23 22 43 43 H 1.07999 * 125.47569 * 179.97438 * 25 24 23 44 44 H 1.08997 * 113.66630 * 144.70102 * 28 12 11 45 45 H 1.09007 * 113.65945 * 13.64860 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.2582 -4.8296 -0.5957 12 6 1.8330 -5.6836 0.5349 13 6 2.0029 -4.3997 1.3478 14 6 1.0597 -6.8777 1.0953 15 6 1.9758 -7.7650 0.2330 16 7 2.4111 -8.9896 0.9091 17 6 2.7657 -10.0695 0.1850 18 8 2.7248 -10.0274 -1.0294 19 6 3.2036 -11.3027 0.8658 20 6 3.5670 -12.4067 0.1427 21 6 3.9779 -13.5633 0.8186 22 7 4.0150 -13.5897 2.1292 23 6 3.6641 -12.5220 2.8534 24 6 3.6143 -12.2900 4.2237 25 6 3.1729 -10.9911 4.4144 26 7 2.9562 -10.4353 3.2422 27 7 3.2532 -11.3647 2.2397 28 6 3.0113 -6.6275 0.2923 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 3.0651 -3.5647 -0.4057 32 1 1.5968 -5.1307 -1.5871 33 1 0.1777 -4.6980 -0.5386 34 1 1.1319 -4.1460 1.9521 35 1 2.9364 -4.3575 1.9091 36 1 0.0134 -6.9031 0.7910 37 1 1.1941 -7.0218 2.1674 38 1 1.5866 -7.9504 -0.7681 39 1 2.4441 -9.0232 1.8780 40 1 3.5377 -12.3864 -0.9367 41 1 4.2660 -14.4392 0.2563 42 1 3.8731 -12.9955 4.9994 43 1 3.0290 -10.5121 5.3716 44 1 3.6943 -6.7012 1.1385 45 1 3.5241 -6.4529 -0.6537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963941102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:22 Heat of formation + Delta-G solvation = 127.661072 kcal Electronic energy + Delta-G solvation = -28344.347796 eV Core-core repulsion = 24365.264003 eV Total energy + Delta-G solvation = -3979.083794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -43.47832 -41.76162 -40.52999 -39.03927 -37.33315 -35.53934 -35.11065 -33.55837 -32.14368 -31.42572 -30.25856 -27.23408 -26.86214 -26.63883 -25.98516 -24.60711 -24.15150 -22.82026 -21.91530 -21.42632 -19.82369 -19.41718 -18.67051 -18.47991 -18.03797 -17.45281 -17.38370 -16.91472 -16.49498 -16.13740 -16.04595 -15.71685 -15.65151 -15.26753 -14.99592 -14.59471 -14.45099 -13.98645 -13.77320 -13.73316 -13.69716 -13.55021 -13.14701 -13.00539 -12.84512 -12.48768 -12.41088 -12.31494 -12.27165 -12.07740 -11.95687 -11.74612 -11.33850 -11.11715 -11.03354 -10.82882 -10.78103 -10.67938 -10.22540 -9.11820 -8.97800 -7.94984 -5.23019 -1.06046 -0.26986 0.77358 1.23420 1.46553 1.48196 1.56606 1.70761 1.71768 2.34119 2.56000 2.74122 2.87793 3.29576 3.35376 3.42554 3.46710 3.62595 3.73122 3.83722 3.93558 3.96705 4.08227 4.25842 4.29048 4.37667 4.40710 4.45091 4.58185 4.71039 4.74263 4.80025 4.88872 4.92916 4.93457 4.97450 5.01188 5.04559 5.20447 5.24458 5.39166 5.44698 5.45139 5.55832 5.67427 6.11650 6.27515 6.33235 6.44370 6.81994 7.33157 8.10863 8.33933 9.28340 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.001916 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.776337 B =14611.303806 C =15187.232152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.728 5.728 10 C 0.148 3.852 11 C -0.120 4.120 12 C -0.088 4.088 13 C -0.140 4.140 14 C -0.119 4.119 15 C 0.124 3.876 16 N -0.693 5.693 17 C 0.556 3.444 18 O -0.544 6.544 19 C 0.109 3.891 20 C -0.131 4.131 21 C 0.190 3.810 22 N -0.464 5.464 23 C 0.231 3.769 24 C -0.257 4.257 25 C 0.101 3.899 26 N -0.350 5.350 27 N -0.316 5.316 28 C -0.118 4.118 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.420 0.580 40 H 0.201 0.799 41 H 0.238 0.762 42 H 0.185 0.815 43 H 0.237 0.763 44 H 0.092 0.908 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -32.802 6.032 34.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.366 5.366 10 C 0.038 3.962 11 C -0.158 4.158 12 C -0.089 4.089 13 C -0.180 4.180 14 C -0.157 4.157 15 C 0.019 3.981 16 N -0.347 5.347 17 C 0.341 3.659 18 O -0.422 6.422 19 C -0.008 4.008 20 C -0.156 4.156 21 C 0.005 3.995 22 N -0.175 5.175 23 C 0.004 3.996 24 C -0.288 4.288 25 C -0.074 4.074 26 N -0.177 5.177 27 N -0.090 5.090 28 C -0.156 4.156 29 H 0.059 0.941 30 H 0.206 0.794 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.263 0.737 40 H 0.218 0.782 41 H 0.255 0.745 42 H 0.203 0.797 43 H 0.253 0.747 44 H 0.110 0.890 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.141 -32.098 5.339 33.542 hybrid contribution -0.181 1.302 0.394 1.372 sum 7.959 -30.796 5.733 32.321 Atomic orbital electron populations 1.69813 1.06584 1.26009 1.59655 1.25578 0.96424 1.01134 1.03917 0.85145 0.77709 0.79552 0.77399 1.21457 1.22221 1.19456 1.19698 0.91480 0.85456 1.40838 0.90687 1.42597 1.05363 1.01048 1.87575 1.21901 0.95195 0.83866 0.95203 1.23073 0.99986 0.95376 0.97410 1.21867 0.97475 0.91937 0.97611 1.23424 1.00917 0.95381 0.98302 1.23138 0.99113 0.93207 1.00218 1.22640 0.96430 0.81158 0.97847 1.46417 1.64173 1.11944 1.12152 1.17850 0.78291 0.82999 0.86801 1.90847 1.54851 1.83415 1.13070 1.20860 1.02448 0.97942 0.79599 1.22663 0.97847 0.90587 1.04524 1.24311 0.88339 0.98349 0.88484 1.68075 1.15938 1.24261 1.09270 1.21257 0.99889 0.83126 0.95351 1.21462 1.16211 0.99496 0.91607 1.24468 0.92731 0.93075 0.97149 1.77217 1.31151 1.13421 0.95905 1.47437 1.43939 1.12746 1.04904 1.23132 0.96112 0.93529 1.02823 0.94059 0.79443 0.91122 0.91087 0.90477 0.91463 0.92109 0.90073 0.88458 0.87166 0.73709 0.78185 0.74542 0.79745 0.74652 0.88996 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.01 13.06 21.65 0.28 -59.72 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 3 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.24 -13.68 9.97 84.03 0.84 -12.84 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.73 -37.32 5.40 -319.92 -1.73 -39.05 16 10 C 0.15 5.89 4.48 45.63 0.20 6.09 16 11 C -0.12 -3.89 7.59 30.88 0.23 -3.66 16 12 C -0.09 -2.40 1.11 -52.32 -0.06 -2.46 16 13 C -0.14 -4.73 7.64 30.88 0.24 -4.49 16 14 C -0.12 -2.72 7.59 30.88 0.23 -2.49 16 15 C 0.12 2.88 4.24 45.62 0.19 3.07 16 16 N -0.69 -15.54 5.35 -442.72 -2.37 -17.91 16 17 C 0.56 12.94 7.79 86.69 0.68 13.62 16 18 O -0.54 -14.87 15.96 -3.98 -0.06 -14.94 16 19 C 0.11 2.06 6.82 40.36 0.28 2.33 16 20 C -0.13 -1.51 9.61 22.41 0.22 -1.30 16 21 C 0.19 1.55 11.26 85.25 0.96 2.51 16 22 N -0.46 -6.98 10.44 -192.63 -2.01 -8.99 16 23 C 0.23 4.20 7.93 133.23 1.06 5.25 16 24 C -0.26 -3.67 10.91 22.53 0.25 -3.43 16 25 C 0.10 1.33 11.94 84.80 1.01 2.34 16 26 N -0.35 -6.66 9.92 -57.55 -0.57 -7.23 16 27 N -0.32 -6.24 3.94 -181.98 -0.72 -6.96 16 28 C -0.12 -2.86 7.64 30.88 0.24 -2.62 16 29 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.37 20.49 7.92 -92.71 -0.73 19.76 16 31 H 0.07 2.84 8.10 -2.38 -0.02 2.82 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 2.05 8.12 -2.38 -0.02 2.03 16 38 H 0.11 2.78 7.46 -2.39 -0.02 2.76 16 39 H 0.42 9.00 5.75 -92.71 -0.53 8.47 16 40 H 0.20 1.44 7.65 -2.91 -0.02 1.42 16 41 H 0.24 -0.58 8.06 -2.91 -0.02 -0.60 16 42 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.24 1.05 8.06 -2.91 -0.02 1.02 16 44 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -75.32 379.25 1.65 -73.67 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.23 Total: 34.62 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 7.02 Total: -2.16 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -7.11 Total: -139.86 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.06 Total: -14.94 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.32 1.65 -73.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963941102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.328 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds