Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47079 * 240.00543 * 3 2 1 5 5 H 1.48501 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47125 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99946 * 180.02562 * 9 7 2 11 11 C 1.53948 * 113.58213 * 204.99796 * 10 9 7 12 12 C 1.52901 * 86.78569 * 220.66282 * 11 10 9 13 13 C 1.52913 * 88.04074 * 24.90017 * 12 11 10 14 14 C 1.52908 * 121.13795 * 150.61759 * 12 11 10 15 15 C 1.53945 * 86.78560 * 100.82207 * 14 12 11 16 16 N 1.46496 * 113.58135 * 139.33502 * 15 14 12 17 17 C 1.34772 * 120.00205 * 155.00356 * 16 15 14 18 18 O 1.21600 * 120.00029 * 0.02562 * 17 16 15 19 19 C 1.47572 * 120.00248 * 180.02562 * 17 16 15 20 20 C 1.36483 * 125.92235 * 180.02562 * 19 17 16 21 21 N 1.36195 * 107.01703 * 180.24580 * 20 19 17 22 22 C 1.36666 * 132.45114 * 179.74987 * 21 20 19 23 23 C 1.35478 * 119.10362 * 180.02562 * 22 21 20 24 24 C 1.40295 * 119.35877 * 359.97438 * 23 22 21 25 25 N 1.31145 * 120.41283 * 359.61701 * 24 23 22 26 26 C 1.34288 * 120.94246 * 0.61460 * 25 24 23 27 27 N 1.32215 * 131.65742 * 179.28587 * 26 25 24 28 28 C 1.52905 * 121.14030 * 259.18058 * 12 11 10 29 29 H 0.96997 * 120.00145 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00194 * 0.02562 * 9 7 2 31 31 H 1.09000 * 112.87904 * 336.14171 * 10 9 7 32 32 H 1.09002 * 113.65760 * 106.19281 * 11 10 9 33 33 H 1.09000 * 113.74724 * 335.15294 * 11 10 9 34 34 H 1.08998 * 113.66522 * 89.57756 * 13 12 11 35 35 H 1.09010 * 113.66080 * 220.62905 * 13 12 11 36 36 H 1.09003 * 113.65956 * 346.34951 * 14 12 11 37 37 H 1.08998 * 113.66461 * 215.30039 * 14 12 11 38 38 H 1.08994 * 113.58144 * 270.05547 * 15 14 12 39 39 H 0.97001 * 119.99864 * 335.00753 * 16 15 14 40 40 H 1.08002 * 126.48771 * 359.97365 * 20 19 17 41 41 H 1.07999 * 120.44699 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.32080 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.79605 * 179.97438 * 24 23 22 44 44 H 1.09003 * 113.66368 * 144.70540 * 28 12 11 45 45 H 1.08999 * 113.66324 * 13.64833 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.2587 -4.8295 -0.5968 12 6 1.8335 -5.6835 0.5338 13 6 2.0031 -4.3996 1.3468 14 6 1.0602 -6.8778 1.0941 15 6 1.9763 -7.7650 0.2318 16 7 2.4117 -8.9895 0.9080 17 6 2.7665 -10.0694 0.1839 18 8 2.7257 -10.0272 -1.0307 19 6 3.2045 -11.3031 0.8650 20 6 3.5893 -12.4614 0.2544 21 7 3.9077 -13.3452 1.2405 22 6 4.3444 -14.6399 1.2132 23 6 4.5836 -15.2795 2.3833 24 6 4.3786 -14.5995 3.5933 25 7 3.9667 -13.3545 3.5936 26 6 3.7209 -12.7082 2.4424 27 7 3.2951 -11.4807 2.1973 28 6 3.0118 -6.6273 0.2912 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0654 -3.5645 -0.4067 32 1 1.5975 -5.1306 -1.5881 33 1 0.1781 -4.6980 -0.5399 34 1 1.1321 -4.1460 1.9510 35 1 2.9366 -4.3573 1.9081 36 1 0.0139 -6.9032 0.7897 37 1 1.1945 -7.0219 2.1662 38 1 1.5873 -7.9503 -0.7693 39 1 2.4445 -9.0230 1.8769 40 1 3.6290 -12.6442 -0.8093 41 1 4.4959 -15.1466 0.2716 42 1 4.9287 -16.3028 2.3847 43 1 4.5667 -15.1027 4.5302 44 1 3.6947 -6.7010 1.1376 45 1 3.5246 -6.4527 -0.6547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964212608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 132.905839 kcal Electronic energy + Delta-G solvation = -27610.583900 eV Core-core repulsion = 23631.727536 eV Total energy + Delta-G solvation = -3978.856364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.60324 -40.51931 -39.41075 -38.34008 -35.82984 -35.23379 -33.60504 -32.27609 -31.47555 -29.95313 -29.45271 -26.12805 -25.69323 -25.16287 -24.35258 -23.85719 -23.57081 -21.95654 -20.58038 -19.99725 -19.08544 -18.24384 -17.77942 -17.32780 -16.96938 -16.92197 -16.39181 -16.18528 -15.26417 -15.01858 -14.81035 -14.72757 -14.62817 -14.25101 -13.99189 -13.69133 -13.38102 -13.00577 -12.75129 -12.54153 -12.41875 -12.30165 -12.05442 -11.59755 -11.27731 -11.19979 -10.93630 -10.82865 -10.65056 -10.52793 -10.43953 -10.19390 -9.99564 -9.79511 -9.71878 -9.65601 -9.30167 -9.03816 -8.80352 -8.79301 -6.89164 -5.72586 -3.00722 -0.19483 0.39587 1.51418 1.67491 2.79470 2.81235 3.08748 3.21966 3.47561 3.51736 3.52850 3.68012 3.78644 4.03890 4.36145 4.51520 4.62093 4.64212 4.71663 4.77252 4.86842 4.87854 4.94098 4.96756 5.43229 5.47263 5.50220 5.58918 5.73782 5.83263 5.83761 5.87627 5.99014 6.02006 6.05866 6.16172 6.26652 6.30133 6.44109 6.50281 6.56369 6.72387 6.84337 7.00855 7.18476 7.22026 7.46084 7.74784 8.01402 8.46439 9.57250 10.16619 10.51087 11.49912 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.001600 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.352189 B =17498.886786 C =17778.466969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.128 4.128 12 C -0.101 4.101 13 C -0.148 4.148 14 C -0.130 4.130 15 C 0.121 3.879 16 N -0.697 5.697 17 C 0.600 3.400 18 O -0.534 6.534 19 C 0.023 3.977 20 C -0.013 4.013 21 N -0.403 5.403 22 C 0.113 3.887 23 C -0.203 4.203 24 C 0.175 3.825 25 N -0.432 5.432 26 C 0.378 3.622 27 N -0.442 5.442 28 C -0.124 4.124 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.410 0.590 40 H 0.202 0.798 41 H 0.179 0.821 42 H 0.168 0.832 43 H 0.186 0.814 44 H 0.084 0.916 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 -37.401 4.265 38.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.167 4.167 12 C -0.103 4.103 13 C -0.189 4.189 14 C -0.168 4.168 15 C 0.017 3.983 16 N -0.347 5.347 17 C 0.385 3.615 18 O -0.411 6.411 19 C -0.111 4.111 20 C -0.149 4.149 21 N -0.080 5.080 22 C -0.018 4.018 23 C -0.226 4.226 24 C -0.014 4.014 25 N -0.143 5.143 26 C 0.029 3.971 27 N -0.166 5.166 28 C -0.162 4.162 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.246 0.754 40 H 0.219 0.781 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.203 0.797 44 H 0.103 0.897 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.718 -35.835 4.584 37.164 hybrid contribution 0.545 -0.347 -0.711 0.961 sum 9.263 -36.182 3.873 37.549 Atomic orbital electron populations 1.69649 1.05113 1.25749 1.57681 1.24750 0.95509 0.97708 1.03002 0.86271 0.78524 0.83582 0.77835 1.21284 1.21723 1.21286 1.19278 0.91063 0.84313 1.42683 0.91175 1.42409 1.05727 0.99909 1.87089 1.21547 0.95217 0.84806 0.92837 1.23208 1.00625 0.96688 0.96209 1.22067 0.96272 0.92373 0.99556 1.23638 1.01118 0.94487 0.99698 1.23183 0.99000 0.95029 0.99560 1.22746 0.96518 0.80992 0.98027 1.45904 1.65654 1.12262 1.10845 1.16834 0.77196 0.81405 0.86103 1.90827 1.54364 1.83230 1.12659 1.20810 1.05406 0.95633 0.89246 1.22649 1.08119 0.89162 0.94921 1.43905 1.42482 1.10835 1.10772 1.22296 0.95163 0.82359 1.01995 1.21895 1.05625 1.03331 0.91708 1.23429 0.90300 0.88436 0.99238 1.68004 1.13712 1.09786 1.22795 1.21893 1.03585 0.90475 0.81157 1.70793 1.19741 1.11835 1.14230 1.23146 0.96393 0.94186 1.02490 0.93484 0.78123 0.90800 0.92058 0.90020 0.90280 0.92703 0.90736 0.89681 0.86582 0.75398 0.78137 0.80378 0.81417 0.79714 0.89719 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.86 9.97 -15.06 -0.15 -7.01 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -18.28 5.40 -52.48 -0.28 -18.56 16 10 C 0.17 3.41 4.48 -66.95 -0.30 3.11 16 11 C -0.13 -2.18 7.59 -26.29 -0.20 -2.38 16 12 C -0.10 -1.49 1.11 -154.72 -0.17 -1.66 16 13 C -0.15 -2.62 7.64 -26.28 -0.20 -2.82 16 14 C -0.13 -1.63 7.59 -26.29 -0.20 -1.83 16 15 C 0.12 1.53 4.24 -66.95 -0.28 1.25 16 16 N -0.70 -8.41 5.35 -53.88 -0.29 -8.69 16 17 C 0.60 7.86 7.82 -12.46 -0.10 7.76 16 18 O -0.53 -8.21 16.47 5.28 0.09 -8.12 16 19 C 0.02 0.27 6.94 -83.43 -0.58 -0.31 16 20 C -0.01 -0.12 11.47 -16.25 -0.19 -0.30 16 21 N -0.40 -3.13 2.93 -64.13 -0.19 -3.32 16 22 C 0.11 0.36 11.05 -16.38 -0.18 0.18 16 23 C -0.20 -0.33 10.06 -39.79 -0.40 -0.73 16 24 C 0.18 0.69 11.27 -17.07 -0.19 0.49 16 25 N -0.43 -3.96 10.48 -13.67 -0.14 -4.10 16 26 C 0.38 4.10 8.90 -322.40 -2.87 1.23 16 27 N -0.44 -5.59 11.01 -11.03 -0.12 -5.71 16 28 C -0.12 -1.64 7.64 -26.28 -0.20 -1.84 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.42 7.92 -40.82 -0.32 10.10 16 31 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 38 H 0.12 1.59 7.46 -51.93 -0.39 1.20 16 39 H 0.41 4.55 8.42 -40.82 -0.34 4.21 16 40 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.18 -0.12 8.06 -52.49 -0.42 -0.54 16 42 H 0.17 -0.39 8.06 -52.49 -0.42 -0.81 16 43 H 0.19 0.00 8.06 -52.49 -0.42 -0.42 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -36.79 384.22 -11.85 -48.64 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.09 Total: 9.60 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -6.31 Total: -5.36 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.30 Total: -68.24 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.79 -11.85 -48.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964212608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.542 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds