Wall clock time and date at job start Sat Apr 11 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47079 * 240.00543 * 3 2 1 5 5 H 1.48501 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47125 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99946 * 180.02562 * 9 7 2 11 11 C 1.53948 * 113.58213 * 204.99796 * 10 9 7 12 12 C 1.52901 * 86.78569 * 220.66282 * 11 10 9 13 13 C 1.52913 * 88.04074 * 24.90017 * 12 11 10 14 14 C 1.52908 * 121.13795 * 150.61759 * 12 11 10 15 15 C 1.53945 * 86.78560 * 100.82207 * 14 12 11 16 16 N 1.46496 * 113.58135 * 139.33502 * 15 14 12 17 17 C 1.34772 * 120.00205 * 155.00356 * 16 15 14 18 18 O 1.21600 * 120.00029 * 0.02562 * 17 16 15 19 19 C 1.47572 * 120.00248 * 180.02562 * 17 16 15 20 20 C 1.36483 * 125.92235 * 180.02562 * 19 17 16 21 21 N 1.36195 * 107.01703 * 180.24580 * 20 19 17 22 22 C 1.36666 * 132.45114 * 179.74987 * 21 20 19 23 23 C 1.35478 * 119.10362 * 180.02562 * 22 21 20 24 24 C 1.40295 * 119.35877 * 359.97438 * 23 22 21 25 25 N 1.31145 * 120.41283 * 359.61701 * 24 23 22 26 26 C 1.34288 * 120.94246 * 0.61460 * 25 24 23 27 27 N 1.32215 * 131.65742 * 179.28587 * 26 25 24 28 28 C 1.52905 * 121.14030 * 259.18058 * 12 11 10 29 29 H 0.96997 * 120.00145 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00194 * 0.02562 * 9 7 2 31 31 H 1.09000 * 112.87904 * 336.14171 * 10 9 7 32 32 H 1.09002 * 113.65760 * 106.19281 * 11 10 9 33 33 H 1.09000 * 113.74724 * 335.15294 * 11 10 9 34 34 H 1.08998 * 113.66522 * 89.57756 * 13 12 11 35 35 H 1.09010 * 113.66080 * 220.62905 * 13 12 11 36 36 H 1.09003 * 113.65956 * 346.34951 * 14 12 11 37 37 H 1.08998 * 113.66461 * 215.30039 * 14 12 11 38 38 H 1.08994 * 113.58144 * 270.05547 * 15 14 12 39 39 H 0.97001 * 119.99864 * 335.00753 * 16 15 14 40 40 H 1.08002 * 126.48771 * 359.97365 * 20 19 17 41 41 H 1.07999 * 120.44699 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.32080 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.79605 * 179.97438 * 24 23 22 44 44 H 1.09003 * 113.66368 * 144.70540 * 28 12 11 45 45 H 1.08999 * 113.66324 * 13.64833 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.2587 -4.8295 -0.5968 12 6 1.8335 -5.6835 0.5338 13 6 2.0031 -4.3996 1.3468 14 6 1.0602 -6.8778 1.0941 15 6 1.9763 -7.7650 0.2318 16 7 2.4117 -8.9895 0.9080 17 6 2.7665 -10.0694 0.1839 18 8 2.7257 -10.0272 -1.0307 19 6 3.2045 -11.3031 0.8650 20 6 3.5893 -12.4614 0.2544 21 7 3.9077 -13.3452 1.2405 22 6 4.3444 -14.6399 1.2132 23 6 4.5836 -15.2795 2.3833 24 6 4.3786 -14.5995 3.5933 25 7 3.9667 -13.3545 3.5936 26 6 3.7209 -12.7082 2.4424 27 7 3.2951 -11.4807 2.1973 28 6 3.0118 -6.6273 0.2912 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0654 -3.5645 -0.4067 32 1 1.5975 -5.1306 -1.5881 33 1 0.1781 -4.6980 -0.5399 34 1 1.1321 -4.1460 1.9510 35 1 2.9366 -4.3573 1.9081 36 1 0.0139 -6.9032 0.7897 37 1 1.1945 -7.0219 2.1662 38 1 1.5873 -7.9503 -0.7693 39 1 2.4445 -9.0230 1.8769 40 1 3.6290 -12.6442 -0.8093 41 1 4.4959 -15.1466 0.2716 42 1 4.9287 -16.3028 2.3847 43 1 4.5667 -15.1027 4.5302 44 1 3.6947 -6.7010 1.1376 45 1 3.5246 -6.4527 -0.6547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964212608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:36 Heat of formation + Delta-G solvation = 109.322563 kcal Electronic energy + Delta-G solvation = -27611.606548 eV Core-core repulsion = 23631.727536 eV Total energy + Delta-G solvation = -3979.879011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -44.13977 -41.68208 -40.36863 -38.97421 -37.24000 -35.74818 -35.23840 -33.64795 -32.08098 -31.33541 -30.50852 -26.88648 -26.77605 -26.55787 -25.93707 -24.68733 -24.25408 -23.09875 -21.48836 -21.41610 -19.73595 -19.37928 -18.75421 -18.58989 -17.94263 -17.54649 -17.25698 -16.89426 -16.79087 -16.07978 -16.02363 -15.65218 -15.46264 -15.26707 -15.14731 -15.03430 -14.40272 -13.87839 -13.68159 -13.62419 -13.52707 -13.43445 -13.10969 -12.96853 -12.93624 -12.79559 -12.35435 -12.28141 -12.09542 -11.90544 -11.84927 -11.51359 -11.17757 -11.06191 -10.91085 -10.79473 -10.73386 -10.31821 -10.01943 -9.39797 -8.96029 -7.93370 -5.21483 -0.54978 -0.05022 0.83863 1.21678 1.47243 1.50518 1.56569 2.04136 2.17883 2.47207 2.54911 2.57487 3.29697 3.37482 3.47094 3.49841 3.52894 3.63590 3.69563 3.82690 3.94387 4.01048 4.10556 4.28847 4.30344 4.34829 4.47410 4.58288 4.62222 4.68976 4.78803 4.80986 4.94262 5.01043 5.03256 5.06037 5.07503 5.12111 5.18436 5.25827 5.44394 5.45923 5.54365 5.61053 5.71274 6.25947 6.28947 6.46395 6.77237 7.07121 7.34547 8.12567 8.35895 9.29816 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.001600 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.352189 B =17498.886786 C =17778.466969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.728 5.728 10 C 0.147 3.853 11 C -0.120 4.120 12 C -0.088 4.088 13 C -0.140 4.140 14 C -0.119 4.119 15 C 0.129 3.871 16 N -0.692 5.692 17 C 0.601 3.399 18 O -0.565 6.565 19 C -0.013 4.013 20 C -0.002 4.002 21 N -0.405 5.405 22 C 0.101 3.899 23 C -0.185 4.185 24 C 0.188 3.812 25 N -0.488 5.488 26 C 0.362 3.638 27 N -0.487 5.487 28 C -0.119 4.119 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.415 0.585 40 H 0.225 0.775 41 H 0.221 0.779 42 H 0.219 0.781 43 H 0.224 0.776 44 H 0.093 0.907 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.940 -41.163 4.704 42.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.366 5.366 10 C 0.038 3.962 11 C -0.158 4.158 12 C -0.089 4.089 13 C -0.181 4.181 14 C -0.158 4.158 15 C 0.024 3.976 16 N -0.341 5.341 17 C 0.387 3.613 18 O -0.444 6.444 19 C -0.146 4.146 20 C -0.138 4.138 21 N -0.081 5.081 22 C -0.028 4.028 23 C -0.207 4.207 24 C 0.001 3.999 25 N -0.201 5.201 26 C 0.012 3.988 27 N -0.212 5.212 28 C -0.157 4.157 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.252 0.748 40 H 0.241 0.759 41 H 0.237 0.763 42 H 0.236 0.764 43 H 0.240 0.760 44 H 0.112 0.888 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.637 -39.672 5.041 41.381 hybrid contribution 0.079 0.511 -0.750 0.911 sum 10.716 -39.160 4.291 40.826 Atomic orbital electron populations 1.69811 1.06606 1.26083 1.59585 1.25569 0.96394 1.01102 1.03807 0.85213 0.77199 0.79209 0.78152 1.20419 1.22120 1.20451 1.19687 0.91516 0.85529 1.41072 0.90699 1.42587 1.05341 1.01039 1.87620 1.21913 0.95199 0.83881 0.95257 1.23064 0.99922 0.95407 0.97447 1.21874 0.97662 0.91933 0.97464 1.23422 1.00845 0.95535 0.98257 1.23152 0.99068 0.93190 1.00342 1.22539 0.96123 0.81207 0.97701 1.45824 1.65369 1.11925 1.11013 1.17064 0.76472 0.81965 0.85802 1.90790 1.55914 1.83909 1.13788 1.20622 1.08256 0.96103 0.89591 1.22932 1.06529 0.88508 0.95851 1.44010 1.42443 1.12222 1.09454 1.23270 0.94182 0.80618 1.04710 1.22505 1.03242 1.04964 0.89998 1.24355 0.86566 0.86898 1.02042 1.68081 1.17209 1.12293 1.22526 1.22042 1.03626 0.90546 0.82612 1.70621 1.21977 1.13817 1.14751 1.23152 0.96140 0.93656 1.02771 0.94056 0.79459 0.91141 0.91164 0.90541 0.91562 0.92153 0.90200 0.88282 0.87458 0.74838 0.75879 0.76268 0.76424 0.75972 0.88813 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.25 -14.14 9.97 84.03 0.84 -13.30 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -38.22 5.40 -319.94 -1.73 -39.95 16 10 C 0.15 6.06 4.48 45.63 0.20 6.26 16 11 C -0.12 -4.07 7.59 30.88 0.23 -3.83 16 12 C -0.09 -2.54 1.11 -52.32 -0.06 -2.60 16 13 C -0.14 -4.94 7.64 30.89 0.24 -4.71 16 14 C -0.12 -2.90 7.59 30.88 0.23 -2.66 16 15 C 0.13 3.20 4.24 45.63 0.19 3.40 16 16 N -0.69 -16.85 5.35 -442.65 -2.37 -19.22 16 17 C 0.60 16.15 7.82 86.71 0.68 16.83 16 18 O -0.56 -17.70 16.47 -4.03 -0.07 -17.77 16 19 C -0.01 -0.32 6.94 40.76 0.28 -0.04 16 20 C 0.00 -0.03 11.47 83.61 0.96 0.93 16 21 N -0.40 -5.68 2.93 -356.80 -1.05 -6.73 16 22 C 0.10 0.27 11.05 83.30 0.92 1.19 16 23 C -0.19 0.27 10.06 22.13 0.22 0.49 16 24 C 0.19 0.87 11.27 85.30 0.96 1.83 16 25 N -0.49 -8.49 10.48 -197.16 -2.07 -10.56 16 26 C 0.36 7.79 8.90 261.34 2.33 10.11 16 27 N -0.49 -12.77 11.01 -188.81 -2.08 -14.85 16 28 C -0.12 -3.07 7.64 30.88 0.24 -2.83 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.37 20.93 7.92 -92.71 -0.73 20.20 16 31 H 0.07 2.93 8.10 -2.39 -0.02 2.91 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 2.17 8.12 -2.39 -0.02 2.16 16 38 H 0.11 2.93 7.46 -2.39 -0.02 2.91 16 39 H 0.41 9.36 8.42 -92.71 -0.78 8.58 16 40 H 0.22 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.22 -1.40 8.06 -2.91 -0.02 -1.43 16 42 H 0.22 -2.52 8.06 -2.91 -0.02 -2.54 16 43 H 0.22 -0.96 8.06 -2.91 -0.02 -0.99 16 44 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -84.77 384.22 1.42 -83.36 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.47 Total: 29.93 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 8.94 Total: 7.01 kcal Atomic # 7 Polarization: -142.84 SS G_CDS: -9.01 Total: -151.84 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.07 Total: -17.77 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -84.77 1.42 -83.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964212608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.679 kcal (2) G-P(sol) polarization free energy of solvation -84.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds