Wall clock time and date at job start Sat Apr 11 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48502 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 300.00055 * 3 2 1 6 6 H 1.48507 * 109.47054 * 60.00094 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21581 * 120.00146 * 359.97438 * 17 16 15 19 19 C 1.47581 * 119.99683 * 180.02562 * 17 16 15 20 20 C 1.41523 * 120.56779 * 359.72106 * 19 17 16 21 21 N 1.30901 * 120.16246 * 179.67917 * 20 19 17 22 22 C 1.34254 * 121.27694 * 0.63070 * 21 20 19 23 23 N 1.32425 * 131.63859 * 179.68301 * 22 21 20 24 24 C 1.33696 * 109.32857 * 179.97438 * 23 22 21 25 25 C 1.34912 * 108.65653 * 359.97438 * 24 23 22 26 26 N 1.37013 * 107.05436 * 0.02562 * 25 24 23 27 27 C 1.35963 * 132.55012 * 179.97438 * 26 25 24 28 28 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 29 29 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 31 31 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 32 32 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 33 33 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 34 34 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 35 35 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 36 36 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 37 37 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 38 38 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 39 39 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 40 40 H 1.07996 * 119.91529 * 359.97318 * 20 19 17 41 41 H 1.08001 * 125.67349 * 180.02562 * 24 23 22 42 42 H 1.08000 * 126.47150 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.58207 * 359.97438 * 27 26 25 44 44 H 1.08990 * 113.66878 * 265.09053 * 28 12 11 45 45 H 1.09008 * 113.66523 * 36.15077 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1243 -9.2218 2.6145 19 6 3.4527 -11.1614 1.5020 20 6 2.5922 -11.7487 0.5441 21 7 2.6651 -13.0314 0.2934 22 6 3.5393 -13.8193 0.9395 23 7 3.7815 -15.1186 0.8557 24 6 4.7569 -15.4429 1.7106 25 6 5.1515 -14.3273 2.3586 26 7 4.3893 -13.2940 1.8803 27 6 4.3550 -11.9661 2.1701 28 6 1.0599 -6.8787 1.0890 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0023 31 1 3.0653 -3.5642 -0.4088 32 1 1.5973 -5.1293 -1.5917 33 1 0.1782 -4.6962 -0.5422 34 1 1.1318 -4.1478 1.9482 35 1 2.9356 -4.3598 1.9065 36 1 2.9951 -7.1043 -0.6938 37 1 3.9799 -6.1903 0.5299 38 1 2.8043 -7.2489 2.4010 39 1 1.9071 -9.3338 0.4669 40 1 1.8770 -11.1362 0.0153 41 1 5.1622 -16.4332 1.8575 42 1 5.9225 -14.2612 3.1119 43 1 5.0213 -11.5477 2.9101 44 1 0.4691 -6.6421 1.9737 45 1 0.4949 -7.4261 0.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964339049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:43 Heat of formation + Delta-G solvation = 135.003148 kcal Electronic energy + Delta-G solvation = -27711.624219 eV Core-core repulsion = 23732.858801 eV Total energy + Delta-G solvation = -3978.765418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.61248 -40.84724 -39.73677 -38.27546 -36.07821 -35.19866 -33.87835 -32.57576 -31.41340 -29.85268 -29.53378 -25.87828 -25.78944 -25.23810 -24.80398 -24.09725 -22.71847 -22.33389 -21.21397 -20.20667 -19.24142 -18.44680 -17.78172 -17.53041 -17.06270 -16.95466 -16.58311 -15.97202 -15.49026 -15.05273 -14.82074 -14.75672 -14.64748 -14.41929 -14.10028 -14.05431 -13.47209 -13.03790 -12.92528 -12.71295 -12.60981 -12.37880 -12.02138 -11.67898 -11.36184 -11.34146 -11.18322 -10.90833 -10.81663 -10.70009 -10.35269 -10.21296 -10.03743 -9.84874 -9.81292 -9.74124 -9.46391 -9.28132 -8.88139 -8.81479 -6.96905 -5.79657 -3.08090 -0.30081 0.18500 1.61220 1.90992 2.51914 2.65621 2.92797 3.05955 3.41668 3.47708 3.49709 3.60313 3.76183 4.03414 4.12467 4.41982 4.53166 4.57293 4.61467 4.66092 4.70948 4.78358 4.80326 4.93907 5.33398 5.37471 5.42282 5.48778 5.62122 5.72051 5.78820 5.82152 5.87298 5.87649 5.89343 5.97876 6.13730 6.19324 6.32149 6.35850 6.39166 6.60762 6.85164 6.87787 7.03320 7.11467 7.30521 7.67785 7.69328 8.39246 9.50472 10.08950 10.43101 11.42854 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041771 B = 0.001607 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.165097 B =17419.430697 C =17761.231603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.135 4.135 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.125 4.125 15 C 0.123 3.877 16 N -0.707 5.707 17 C 0.577 3.423 18 O -0.532 6.532 19 C -0.226 4.226 20 C 0.198 3.802 21 N -0.433 5.433 22 C 0.383 3.617 23 N -0.468 5.468 24 C 0.052 3.948 25 C -0.090 4.090 26 N -0.403 5.403 27 C 0.190 3.810 28 C -0.130 4.130 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.400 0.600 40 H 0.185 0.815 41 H 0.193 0.807 42 H 0.193 0.807 43 H 0.192 0.808 44 H 0.076 0.924 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -29.280 4.393 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.175 4.175 12 C -0.103 4.103 13 C -0.183 4.183 14 C -0.163 4.163 15 C 0.019 3.981 16 N -0.357 5.357 17 C 0.362 3.638 18 O -0.409 6.409 19 C -0.235 4.235 20 C 0.009 3.991 21 N -0.144 5.144 22 C 0.035 3.965 23 N -0.189 5.189 24 C -0.099 4.099 25 C -0.220 4.220 26 N -0.080 5.080 27 C 0.054 3.946 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.236 0.764 40 H 0.202 0.798 41 H 0.210 0.790 42 H 0.210 0.790 43 H 0.209 0.791 44 H 0.094 0.906 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.568 -29.963 3.882 31.147 hybrid contribution 0.769 1.596 0.855 1.967 sum 8.337 -28.367 4.737 29.944 Atomic orbital electron populations 1.69669 1.05131 1.25593 1.57699 1.24757 0.95516 0.97760 1.02907 0.86129 0.78827 0.84126 0.77183 1.20529 1.21867 1.21868 1.19364 0.91130 0.84267 1.42628 0.91041 1.42422 1.05738 0.99930 1.87026 1.21541 0.95293 0.84894 0.92691 1.23272 1.00632 0.97158 0.96398 1.22087 0.96106 0.92404 0.99656 1.23614 1.01377 0.93542 0.99790 1.23160 0.98519 0.96186 0.98449 1.22760 0.98208 0.76598 1.00494 1.45930 1.38301 1.09438 1.41996 1.17427 0.80891 0.84299 0.81231 1.90839 1.41827 1.74435 1.33842 1.20708 1.02550 0.96233 1.04047 1.23404 0.94427 0.89651 0.91603 1.67803 1.18000 1.05127 1.23443 1.22185 0.92180 0.91192 0.90933 1.70756 1.17854 1.06692 1.23645 1.22747 0.94366 0.99254 0.93495 1.22846 1.04322 0.86210 1.08610 1.44068 1.27551 1.07281 1.29137 1.22633 0.95719 0.80476 0.95748 1.23202 0.95347 0.96916 1.01402 0.93538 0.78117 0.90788 0.92209 0.90149 0.90079 0.92499 0.89702 0.90730 0.86402 0.76410 0.79792 0.79011 0.79025 0.79115 0.90578 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.44 5.40 -52.47 -0.28 -17.72 16 10 C 0.17 3.17 4.48 -66.95 -0.30 2.87 16 11 C -0.14 -2.04 7.59 -26.28 -0.20 -2.23 16 12 C -0.10 -1.26 1.11 -154.71 -0.17 -1.43 16 13 C -0.14 -2.29 7.64 -26.28 -0.20 -2.49 16 14 C -0.12 -1.32 7.64 -26.28 -0.20 -1.52 16 15 C 0.12 1.17 4.24 -66.95 -0.28 0.88 16 16 N -0.71 -5.08 5.31 -53.87 -0.29 -5.36 16 17 C 0.58 5.00 7.77 -12.45 -0.10 4.90 16 18 O -0.53 -6.48 15.98 5.29 0.08 -6.39 16 19 C -0.23 -1.60 5.89 -104.87 -0.62 -2.22 16 20 C 0.20 1.31 10.78 -16.70 -0.18 1.13 16 21 N -0.43 -4.34 10.45 -13.37 -0.14 -4.48 16 22 C 0.38 4.12 8.91 -322.25 -2.87 1.24 16 23 N -0.47 -5.22 11.31 -14.41 -0.16 -5.38 16 24 C 0.05 0.36 11.82 -17.92 -0.21 0.15 16 25 C -0.09 -0.52 11.77 -16.42 -0.19 -0.72 16 26 N -0.40 -3.22 2.94 -63.77 -0.19 -3.41 16 27 C 0.19 1.30 10.65 -15.76 -0.17 1.13 16 28 C -0.13 -1.26 7.59 -26.28 -0.20 -1.46 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.98 7.92 -40.82 -0.32 9.65 16 31 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.12 1.33 7.47 -51.92 -0.39 0.94 16 39 H 0.40 1.68 6.81 -40.82 -0.28 1.40 16 40 H 0.19 0.51 6.48 -52.49 -0.34 0.17 16 41 H 0.19 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.19 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.19 0.93 7.68 -52.48 -0.40 0.53 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.67 8.12 -51.92 -0.42 0.25 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -35.73 380.46 -11.60 -47.34 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.92 Total: 6.68 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -6.14 Total: -7.03 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.33 Total: -63.45 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.08 Total: -6.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.73 -11.60 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964339049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.339 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds