Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48502 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 300.00055 * 3 2 1 6 6 H 1.48507 * 109.47054 * 60.00094 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21581 * 120.00146 * 359.97438 * 17 16 15 19 19 C 1.47581 * 119.99683 * 180.02562 * 17 16 15 20 20 C 1.41523 * 120.56779 * 359.72106 * 19 17 16 21 21 N 1.30901 * 120.16246 * 179.67917 * 20 19 17 22 22 C 1.34254 * 121.27694 * 0.63070 * 21 20 19 23 23 N 1.32425 * 131.63859 * 179.68301 * 22 21 20 24 24 C 1.33696 * 109.32857 * 179.97438 * 23 22 21 25 25 C 1.34912 * 108.65653 * 359.97438 * 24 23 22 26 26 N 1.37013 * 107.05436 * 0.02562 * 25 24 23 27 27 C 1.35963 * 132.55012 * 179.97438 * 26 25 24 28 28 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 29 29 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 31 31 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 32 32 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 33 33 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 34 34 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 35 35 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 36 36 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 37 37 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 38 38 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 39 39 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 40 40 H 1.07996 * 119.91529 * 359.97318 * 20 19 17 41 41 H 1.08001 * 125.67349 * 180.02562 * 24 23 22 42 42 H 1.08000 * 126.47150 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.58207 * 359.97438 * 27 26 25 44 44 H 1.08990 * 113.66878 * 265.09053 * 28 12 11 45 45 H 1.09008 * 113.66523 * 36.15077 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1243 -9.2218 2.6145 19 6 3.4527 -11.1614 1.5020 20 6 2.5922 -11.7487 0.5441 21 7 2.6651 -13.0314 0.2934 22 6 3.5393 -13.8193 0.9395 23 7 3.7815 -15.1186 0.8557 24 6 4.7569 -15.4429 1.7106 25 6 5.1515 -14.3273 2.3586 26 7 4.3893 -13.2940 1.8803 27 6 4.3550 -11.9661 2.1701 28 6 1.0599 -6.8787 1.0890 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0023 31 1 3.0653 -3.5642 -0.4088 32 1 1.5973 -5.1293 -1.5917 33 1 0.1782 -4.6962 -0.5422 34 1 1.1318 -4.1478 1.9482 35 1 2.9356 -4.3598 1.9065 36 1 2.9951 -7.1043 -0.6938 37 1 3.9799 -6.1903 0.5299 38 1 2.8043 -7.2489 2.4010 39 1 1.9071 -9.3338 0.4669 40 1 1.8770 -11.1362 0.0153 41 1 5.1622 -16.4332 1.8575 42 1 5.9225 -14.2612 3.1119 43 1 5.0213 -11.5477 2.9101 44 1 0.4691 -6.6421 1.9737 45 1 0.4949 -7.4261 0.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964339049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = 112.862108 kcal Electronic energy + Delta-G solvation = -27712.584327 eV Core-core repulsion = 23732.858801 eV Total energy + Delta-G solvation = -3979.725525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.15075 -41.72130 -40.60300 -38.90400 -37.25642 -35.81269 -35.27132 -33.84328 -32.23272 -31.23967 -30.36020 -26.71208 -26.55569 -26.52153 -25.89020 -25.28583 -23.68762 -22.93525 -21.95745 -21.49043 -19.82276 -19.45316 -18.98493 -18.52648 -18.07041 -17.52798 -17.30823 -16.89160 -16.55422 -16.10092 -16.00125 -15.68362 -15.40961 -15.19776 -15.18209 -14.88509 -14.54958 -14.38013 -13.81558 -13.61049 -13.54230 -13.16956 -13.04818 -12.99875 -12.94942 -12.83757 -12.37073 -12.32283 -12.09554 -11.87525 -11.81890 -11.42358 -11.14890 -11.01561 -10.92591 -10.81058 -10.68654 -10.40827 -10.00992 -9.34483 -8.94913 -7.93891 -5.21217 -0.83219 -0.32732 1.09579 1.38190 1.47811 1.48049 1.58105 1.91490 2.01650 2.45033 2.46685 2.57280 3.10054 3.27563 3.38123 3.50549 3.54227 3.60655 3.68601 3.74412 3.87618 4.03455 4.08129 4.27637 4.32778 4.36449 4.39248 4.49909 4.55147 4.66624 4.86281 4.88676 4.94189 5.00896 5.06844 5.09119 5.13277 5.18490 5.28258 5.29664 5.45230 5.47138 5.57628 5.64665 5.75529 6.29429 6.30770 6.43705 6.76724 7.07171 7.35073 8.14224 8.36162 9.29646 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041771 B = 0.001607 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.165097 B =17419.430697 C =17761.231603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.729 5.729 10 C 0.143 3.857 11 C -0.123 4.123 12 C -0.090 4.090 13 C -0.139 4.139 14 C -0.120 4.120 15 C 0.132 3.868 16 N -0.692 5.692 17 C 0.583 3.417 18 O -0.569 6.569 19 C -0.229 4.229 20 C 0.210 3.790 21 N -0.468 5.468 22 C 0.352 3.648 23 N -0.512 5.512 24 C 0.036 3.964 25 C -0.077 4.077 26 N -0.407 5.407 27 C 0.194 3.806 28 C -0.118 4.118 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.418 0.582 40 H 0.220 0.780 41 H 0.222 0.778 42 H 0.233 0.767 43 H 0.210 0.790 44 H 0.074 0.926 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.824 -30.961 4.494 32.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.366 5.366 10 C 0.033 3.967 11 C -0.162 4.162 12 C -0.091 4.091 13 C -0.179 4.179 14 C -0.158 4.158 15 C 0.028 3.972 16 N -0.343 5.343 17 C 0.369 3.631 18 O -0.450 6.450 19 C -0.238 4.238 20 C 0.021 3.979 21 N -0.180 5.180 22 C 0.004 3.996 23 N -0.235 5.235 24 C -0.113 4.113 25 C -0.205 4.205 26 N -0.085 5.085 27 C 0.059 3.941 28 C -0.156 4.156 29 H 0.059 0.941 30 H 0.206 0.794 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.257 0.743 40 H 0.237 0.763 41 H 0.238 0.762 42 H 0.249 0.751 43 H 0.227 0.773 44 H 0.092 0.908 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.682 -31.713 3.970 33.118 hybrid contribution 0.514 2.038 0.859 2.271 sum 9.196 -29.674 4.829 31.439 Atomic orbital electron populations 1.69814 1.06549 1.25890 1.59815 1.25529 0.96364 1.00990 1.03981 0.85119 0.78264 0.80068 0.76607 1.19129 1.22061 1.22196 1.19746 0.91485 0.85580 1.40608 0.90751 1.42611 1.05368 1.01106 1.87558 1.21967 0.95345 0.84060 0.95283 1.23103 0.99714 0.95391 0.97945 1.21886 0.98113 0.92058 0.97070 1.23385 1.00649 0.95565 0.98311 1.23201 0.97023 0.95602 0.99974 1.22424 0.97774 0.77741 0.99277 1.45710 1.38185 1.08383 1.42025 1.17518 0.80318 0.84709 0.80530 1.90831 1.43403 1.75156 1.35561 1.20560 1.03259 0.95279 1.04716 1.23940 0.94154 0.88930 0.90826 1.67822 1.19087 1.06315 1.24785 1.22349 0.93415 0.91515 0.92279 1.70678 1.19715 1.07607 1.25508 1.23360 0.93800 1.01105 0.93046 1.23582 1.03767 0.85119 1.08071 1.44179 1.27533 1.07870 1.28914 1.22985 0.95511 0.80083 0.95483 1.23187 0.95367 0.95111 1.01910 0.94090 0.79442 0.91339 0.90712 0.90804 0.91646 0.92666 0.87459 0.91861 0.88195 0.74302 0.76332 0.76159 0.75089 0.77291 0.90778 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.18 13.06 21.65 0.28 -58.89 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.42 9.97 84.03 0.84 -12.59 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.73 -36.31 5.40 -319.92 -1.73 -38.03 16 10 C 0.14 5.39 4.48 45.63 0.20 5.59 16 11 C -0.12 -3.50 7.59 30.89 0.23 -3.27 16 12 C -0.09 -2.06 1.11 -52.31 -0.06 -2.12 16 13 C -0.14 -4.43 7.64 30.88 0.24 -4.19 16 14 C -0.12 -2.19 7.64 30.88 0.24 -1.96 16 15 C 0.13 2.16 4.24 45.63 0.19 2.35 16 16 N -0.69 -7.66 5.31 -442.62 -2.35 -10.01 16 17 C 0.58 8.71 7.77 86.71 0.67 9.38 16 18 O -0.57 -12.93 15.98 -3.97 -0.06 -12.99 16 19 C -0.23 -2.75 5.89 -20.03 -0.12 -2.86 16 20 C 0.21 2.32 10.78 85.64 0.92 3.25 16 21 N -0.47 -8.99 10.45 -196.22 -2.05 -11.04 16 22 C 0.35 7.38 8.91 261.29 2.33 9.71 16 23 N -0.51 -11.35 11.31 -199.52 -2.26 -13.61 16 24 C 0.04 0.45 11.82 83.64 0.99 1.44 16 25 C -0.08 -0.72 11.77 83.12 0.98 0.26 16 26 N -0.41 -5.87 2.94 -355.66 -1.04 -6.92 16 27 C 0.19 2.28 10.65 84.03 0.90 3.17 16 28 C -0.12 -1.90 7.59 30.88 0.23 -1.67 16 29 H 0.25 14.80 8.31 -92.70 -0.77 14.02 16 30 H 0.37 19.93 7.92 -92.71 -0.73 19.20 16 31 H 0.07 2.63 8.10 -2.39 -0.02 2.61 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 2.09 7.47 -2.38 -0.02 2.07 16 39 H 0.42 1.69 6.81 -92.71 -0.63 1.06 16 40 H 0.22 0.45 6.48 -2.91 -0.02 0.43 16 41 H 0.22 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.23 0.01 8.06 -2.91 -0.02 -0.01 16 43 H 0.21 1.55 7.68 -2.91 -0.02 1.53 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.11 1.25 8.12 -2.38 -0.02 1.23 16 Total: -1.00 -80.94 380.46 1.75 -79.19 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.32 Total: 21.60 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 9.25 Total: 2.58 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -9.15 Total: -138.50 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.06 Total: -12.99 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -80.94 1.75 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964339049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.052 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds