Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48503 * 109.46839 * 269.99608 * 3 2 1 5 5 H 1.48494 * 109.47299 * 29.99698 * 3 2 1 6 6 H 1.48506 * 109.46873 * 150.00049 * 3 2 1 7 7 C 1.38811 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99725 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99551 * 179.97438 * 9 7 2 11 11 C 1.53960 * 113.57679 * 205.00032 * 10 9 7 12 12 C 1.52914 * 86.77850 * 220.66778 * 11 10 9 13 13 C 1.52903 * 88.04454 * 24.90150 * 12 11 10 14 14 C 1.52910 * 121.13193 * 150.62158 * 12 11 10 15 15 C 1.53950 * 86.78701 * 100.81641 * 14 12 11 16 16 N 1.46494 * 113.57883 * 139.33198 * 15 14 12 17 17 C 1.34784 * 119.99635 * 155.00404 * 16 15 14 18 18 O 1.21557 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.47799 * 119.99732 * 179.97438 * 17 16 15 20 20 N 1.32297 * 120.59443 * 359.72388 * 19 17 16 21 21 C 1.32693 * 121.19310 * 179.76423 * 20 19 17 22 22 C 1.35479 * 122.10841 * 0.52402 * 21 20 19 23 23 N 1.36230 * 120.52734 * 359.74084 * 22 21 20 24 24 C 1.36162 * 133.92851 * 180.02562 * 23 22 21 25 25 C 1.35340 * 107.14061 * 179.97438 * 24 23 22 26 26 N 1.33559 * 108.61375 * 0.02562 * 25 24 23 27 27 C 1.31855 * 109.14379 * 359.97438 * 26 25 24 28 28 C 1.52913 * 121.13515 * 259.17563 * 12 11 10 29 29 H 0.97002 * 119.99896 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00363 * 0.02562 * 9 7 2 31 31 H 1.08998 * 112.88345 * 336.14256 * 10 9 7 32 32 H 1.08999 * 113.65901 * 106.19413 * 11 10 9 33 33 H 1.08999 * 113.74477 * 335.15241 * 11 10 9 34 34 H 1.08996 * 113.66430 * 89.57537 * 13 12 11 35 35 H 1.09007 * 113.65572 * 220.62754 * 13 12 11 36 36 H 1.09003 * 113.66550 * 346.34471 * 14 12 11 37 37 H 1.09004 * 113.65929 * 215.29189 * 14 12 11 38 38 H 1.09000 * 113.58119 * 270.05146 * 15 14 12 39 39 H 0.96995 * 120.00292 * 335.27837 * 16 15 14 40 40 H 1.07993 * 118.94469 * 180.26658 * 21 20 19 41 41 H 1.07994 * 119.73861 * 179.76784 * 22 21 20 42 42 H 1.08001 * 126.42664 * 359.94438 * 24 23 22 43 43 H 1.08002 * 125.69194 * 179.97438 * 25 24 23 44 44 H 1.08994 * 113.66150 * 144.71400 * 28 12 11 45 45 H 1.09003 * 113.65955 * 13.65527 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.2579 -4.8298 -0.5936 12 6 1.8336 -5.6833 0.5371 13 6 2.0038 -4.3991 1.3493 14 6 1.0606 -6.8773 1.0984 15 6 1.9760 -7.7650 0.2359 16 7 2.4118 -8.9892 0.9123 17 6 2.7660 -10.0695 0.1884 18 8 2.7244 -10.0278 -1.0258 19 6 3.2062 -11.3044 0.8708 20 7 3.2621 -11.3606 2.1914 21 6 3.6511 -12.4645 2.8164 22 6 4.0191 -13.5814 2.1436 23 7 3.9959 -13.6080 0.7818 24 6 4.2985 -14.5538 -0.1499 25 6 4.0792 -14.0007 -1.3655 26 7 3.6531 -12.7468 -1.1928 27 6 3.5937 -12.4842 0.0980 28 6 3.0117 -6.6273 0.2940 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0016 31 1 3.0649 -3.5648 -0.4054 32 1 1.5959 -5.1314 -1.5850 33 1 0.1775 -4.6982 -0.5359 34 1 1.1332 -4.1452 1.9539 35 1 2.9377 -4.3567 1.9099 36 1 0.0140 -6.9029 0.7948 37 1 1.1957 -7.0209 2.1705 38 1 1.5862 -7.9507 -0.7649 39 1 2.4416 -9.0236 1.8812 40 1 3.6791 -12.4716 3.8960 41 1 4.3329 -14.4577 2.6912 42 1 4.6483 -15.5568 0.0448 43 1 4.2253 -14.4913 -2.3165 44 1 3.6952 -6.7007 1.1398 45 1 3.5238 -6.4531 -0.6524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965159995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = 136.378095 kcal Electronic energy + Delta-G solvation = -27957.406454 eV Core-core repulsion = 23978.700658 eV Total energy + Delta-G solvation = -3978.705795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.50598 -40.56342 -39.44709 -38.61030 -35.84660 -34.81926 -33.59215 -32.17615 -31.04899 -30.04258 -29.43928 -26.26087 -25.71098 -25.17053 -24.10431 -23.80236 -23.02422 -22.12332 -20.91599 -20.06587 -19.10765 -18.67234 -17.68724 -16.93275 -16.75635 -16.65103 -16.29674 -16.07935 -15.28849 -15.14390 -14.86360 -14.70397 -14.52252 -14.25975 -14.04498 -13.67191 -13.38467 -13.34108 -12.74917 -12.52157 -12.33107 -12.13876 -11.94531 -11.60786 -11.27755 -10.96575 -10.89899 -10.83818 -10.67551 -10.63134 -10.36108 -10.12415 -9.98361 -9.73053 -9.66710 -9.52945 -9.31243 -9.05120 -8.81014 -8.75167 -6.89780 -5.73430 -3.01476 -0.48176 0.64501 1.74078 2.20977 2.42655 2.69228 3.23919 3.40446 3.46351 3.51051 3.51519 3.53091 3.73029 4.05420 4.44924 4.59768 4.61348 4.64613 4.74785 4.75853 4.80356 4.85009 4.95351 5.16439 5.46148 5.47292 5.51525 5.61315 5.79888 5.85939 5.97271 5.97749 6.00805 6.04930 6.13310 6.14876 6.25925 6.28961 6.43631 6.49327 6.54397 6.70843 6.83061 7.00084 7.20362 7.28885 7.39371 7.74591 7.98584 8.45620 9.56526 10.15896 10.50284 11.49117 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032934 B = 0.001723 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.973187 B =16248.379574 C =16561.692178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.168 3.832 11 C -0.129 4.129 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.129 4.129 15 C 0.122 3.878 16 N -0.696 5.696 17 C 0.570 3.430 18 O -0.494 6.494 19 C 0.183 3.817 20 N -0.427 5.427 21 C 0.029 3.971 22 C 0.035 3.965 23 N -0.358 5.358 24 C -0.081 4.081 25 C 0.034 3.966 26 N -0.432 5.432 27 C 0.189 3.811 28 C -0.124 4.124 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.409 0.591 40 H 0.186 0.814 41 H 0.177 0.823 42 H 0.192 0.808 43 H 0.190 0.810 44 H 0.084 0.916 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -34.369 6.932 35.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.189 4.189 14 C -0.167 4.167 15 C 0.018 3.982 16 N -0.347 5.347 17 C 0.352 3.648 18 O -0.366 6.366 19 C 0.017 3.983 20 N -0.142 5.142 21 C -0.111 4.111 22 C -0.090 4.090 23 N -0.032 5.032 24 C -0.214 4.214 25 C -0.118 4.118 26 N -0.152 5.152 27 C -0.058 4.058 28 C -0.162 4.162 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.245 0.755 40 H 0.203 0.797 41 H 0.194 0.806 42 H 0.209 0.791 43 H 0.207 0.793 44 H 0.103 0.897 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.852 -33.027 6.045 34.482 hybrid contribution 0.715 -0.760 0.908 1.383 sum 8.567 -33.788 6.952 35.543 Atomic orbital electron populations 1.69662 1.05106 1.25622 1.57771 1.24755 0.95522 0.97726 1.03053 0.86195 0.78652 0.83885 0.77499 1.21745 1.21824 1.20778 1.19319 0.91083 0.84294 1.42511 0.91126 1.42419 1.05737 0.99925 1.87065 1.21549 0.95231 0.84804 0.92821 1.23217 1.00627 0.96669 0.96270 1.22069 0.96284 0.92356 0.99573 1.23632 1.01074 0.94489 0.99709 1.23187 0.99048 0.95009 0.99469 1.22768 0.96498 0.80789 0.98117 1.45877 1.66046 1.12086 1.10719 1.17271 0.78982 0.81844 0.86735 1.90918 1.51236 1.82185 1.12242 1.22287 0.96457 0.91770 0.87781 1.68088 1.11546 1.26951 1.07628 1.22117 1.00319 0.87122 1.01564 1.22795 1.02239 1.02619 0.81357 1.42925 1.41058 1.12938 1.06313 1.22840 1.13957 0.96612 0.87990 1.22966 1.00037 0.90870 0.97969 1.70704 1.17600 1.14946 1.11922 1.22540 1.05747 0.88985 0.88538 1.23153 0.96391 0.94132 1.02550 0.93542 0.78123 0.90795 0.92002 0.90011 0.90289 0.92720 0.90697 0.89698 0.86484 0.75482 0.79667 0.80597 0.79125 0.79288 0.89721 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -18.09 5.40 -52.47 -0.28 -18.37 16 10 C 0.17 3.36 4.48 -66.94 -0.30 3.06 16 11 C -0.13 -2.15 7.59 -26.28 -0.20 -2.35 16 12 C -0.10 -1.44 1.11 -154.71 -0.17 -1.61 16 13 C -0.15 -2.53 7.64 -26.28 -0.20 -2.74 16 14 C -0.13 -1.52 7.59 -26.28 -0.20 -1.72 16 15 C 0.12 1.48 4.24 -66.95 -0.28 1.20 16 16 N -0.70 -7.71 5.35 -53.81 -0.29 -8.00 16 17 C 0.57 7.55 7.81 -12.35 -0.10 7.45 16 18 O -0.49 -8.32 15.83 5.32 0.08 -8.24 16 19 C 0.18 2.09 6.97 -80.53 -0.56 1.53 16 20 N -0.43 -3.70 9.67 -8.68 -0.08 -3.79 16 21 C 0.03 0.15 11.01 -18.16 -0.20 -0.05 16 22 C 0.04 0.16 11.00 -16.58 -0.18 -0.02 16 23 N -0.36 -2.83 2.95 -61.12 -0.18 -3.01 16 24 C -0.08 -0.49 11.80 -16.66 -0.20 -0.69 16 25 C 0.03 0.28 11.83 -17.83 -0.21 0.07 16 26 N -0.43 -5.62 10.74 -11.28 -0.12 -5.75 16 27 C 0.19 2.23 7.66 -153.99 -1.18 1.05 16 28 C -0.12 -1.58 7.64 -26.28 -0.20 -1.78 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.32 7.92 -40.82 -0.32 10.00 16 31 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 38 H 0.12 1.59 7.46 -51.93 -0.39 1.20 16 39 H 0.41 3.72 8.10 -40.82 -0.33 3.39 16 40 H 0.19 0.27 8.06 -52.49 -0.42 -0.16 16 41 H 0.18 0.04 8.06 -52.49 -0.42 -0.38 16 42 H 0.19 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -36.41 382.75 -9.91 -46.33 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.08 Total: 9.20 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -4.43 Total: -4.03 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.23 Total: -66.60 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.41 -9.91 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965159995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.703 kcal (2) G-P(sol) polarization free energy of solvation -36.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds