Wall clock time and date at job start Sat Apr 11 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48502 * 109.46876 * 269.99800 * 3 2 1 5 5 H 1.48501 * 109.46820 * 29.99688 * 3 2 1 6 6 H 1.48499 * 109.46958 * 149.99789 * 3 2 1 7 7 C 1.38812 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99794 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47120 * 325.00483 * 10 9 7 12 12 C 1.52999 * 109.47051 * 85.00246 * 10 9 7 13 13 C 1.53002 * 109.47179 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46840 * 300.00084 * 13 12 10 15 15 C 1.52999 * 109.47303 * 59.99992 * 14 13 12 16 16 H 1.08999 * 109.46965 * 59.99658 * 15 14 13 17 17 N 1.46499 * 109.47136 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 275.27771 * 17 15 14 19 19 O 1.21553 * 120.00289 * 359.72074 * 18 17 15 20 20 C 1.47846 * 119.99557 * 179.72375 * 18 17 15 21 21 C 1.40597 * 120.28214 * 359.97438 * 20 18 17 22 22 N 1.30812 * 121.52255 * 179.97438 * 21 20 18 23 23 C 1.33754 * 121.79902 * 0.02562 * 22 21 20 24 24 N 1.33888 * 120.62592 * 180.02562 * 23 22 21 25 25 C 1.31330 * 119.85061 * 179.97438 * 24 23 22 26 26 C 1.39762 * 120.77595 * 0.02562 * 25 24 23 27 27 N 1.31299 * 120.55332 * 359.97438 * 26 25 24 28 28 C 1.33665 * 119.70897 * 359.95603 * 27 26 25 29 29 C 1.38907 * 120.27496 * 179.72117 * 20 18 17 30 30 C 1.52992 * 109.47176 * 204.99989 * 10 9 7 31 31 H 0.97001 * 119.99930 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99484 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47368 * 299.99995 * 12 10 9 34 34 H 1.09000 * 109.47077 * 59.99600 * 12 10 9 35 35 H 1.08999 * 109.47056 * 60.00198 * 13 12 10 36 36 H 1.09000 * 109.46999 * 179.97438 * 13 12 10 37 37 H 1.09006 * 109.46786 * 299.99624 * 14 13 12 38 38 H 1.08999 * 109.46630 * 180.02562 * 14 13 12 39 39 H 0.97001 * 119.99790 * 94.99484 * 17 15 14 40 40 H 1.07998 * 119.23975 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.61344 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.71899 * 179.97438 * 26 25 24 43 43 H 1.07995 * 121.00082 * 0.02562 * 29 20 18 44 44 H 1.09009 * 109.47102 * 60.00236 * 30 10 9 45 45 H 1.08999 * 109.47499 * 300.00261 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5888 12 6 2.4218 -4.0356 1.4375 13 6 3.1863 -5.3609 1.4376 14 6 2.3085 -6.4560 0.8281 15 6 1.9447 -6.0772 -0.6089 16 1 2.8554 -5.9713 -1.1984 17 7 1.1038 -7.1254 -1.1922 18 6 1.6723 -8.2108 -1.7537 19 8 2.8828 -8.3176 -1.7805 20 6 0.8235 -9.2715 -2.3369 21 6 -0.5773 -9.1542 -2.3086 22 7 -1.3514 -10.0777 -2.8178 23 6 -0.8523 -11.1789 -3.3900 24 7 -1.6665 -12.1091 -3.9043 25 6 -1.1600 -13.1843 -4.4630 26 6 0.2233 -13.3724 -4.5281 27 7 1.0430 -12.4751 -4.0311 28 6 0.5500 -11.3723 -3.4590 29 6 1.4034 -10.3898 -2.9221 30 6 1.1809 -4.7521 -0.6091 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0002 33 1 3.0468 -3.2552 1.8719 34 1 1.5111 -4.1418 2.0270 35 1 4.0970 -5.2551 0.8482 36 1 3.4459 -5.6306 2.4614 37 1 1.3978 -6.5618 1.4177 38 1 2.8530 -7.4002 0.8286 39 1 0.1378 -7.0401 -1.1707 40 1 -1.0246 -8.2816 -1.8561 41 1 -1.8203 -13.9324 -4.8763 42 1 0.6214 -14.2632 -4.9911 43 1 2.4766 -10.5039 -2.9609 44 1 0.9217 -4.4822 -1.6329 45 1 0.2702 -4.8584 -0.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981144983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:04 Heat of formation + Delta-G solvation = 53.721610 kcal Electronic energy + Delta-G solvation = -28164.149592 eV Core-core repulsion = 24181.859542 eV Total energy + Delta-G solvation = -3982.290050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22499 -40.37624 -38.73852 -37.86032 -35.56106 -34.86135 -33.51201 -32.47971 -31.78900 -31.15233 -29.44417 -27.86547 -26.48125 -25.65020 -23.79991 -23.37839 -22.55695 -21.91270 -20.80241 -20.02659 -19.38502 -18.85252 -18.26132 -17.23521 -16.83076 -16.26394 -16.12866 -15.63902 -15.27364 -15.17743 -14.95470 -14.43545 -14.19165 -13.88054 -13.76780 -13.62142 -13.41114 -13.25456 -13.16100 -12.75543 -12.39864 -12.28591 -12.20084 -12.11183 -11.31036 -11.03078 -11.00711 -10.90420 -10.76955 -10.46134 -10.40187 -10.25511 -10.17108 -9.89110 -9.80460 -9.75897 -9.65352 -9.31357 -9.13836 -8.89417 -6.98585 -5.78886 -3.07649 -0.64715 -0.34256 1.18053 1.84138 2.72114 2.79966 2.92803 3.40424 3.42525 3.47099 3.47411 3.48214 3.49354 3.99252 4.05024 4.20157 4.33264 4.42439 4.55827 4.67486 4.86590 4.97102 5.03600 5.22101 5.27665 5.34810 5.46267 5.55220 5.62957 5.67615 5.73825 5.81910 5.91814 5.96697 6.09038 6.19449 6.26918 6.35028 6.42459 6.48391 6.55669 6.68514 6.85588 6.93080 7.08932 7.23956 7.32829 7.69068 7.89655 8.39796 9.51094 10.07917 10.42480 11.43719 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.001944 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.803558 B =14397.334622 C =15044.279242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.092 0.908 17 N -0.713 5.713 18 C 0.564 3.436 19 O -0.526 6.526 20 C -0.176 4.176 21 C 0.193 3.807 22 N -0.454 5.454 23 C 0.272 3.728 24 N -0.418 5.418 25 C 0.114 3.886 26 C 0.073 3.927 27 N -0.404 5.404 28 C 0.018 3.982 29 C 0.040 3.960 30 C -0.131 4.131 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.399 0.601 40 H 0.178 0.822 41 H 0.186 0.814 42 H 0.185 0.815 43 H 0.167 0.833 44 H 0.070 0.930 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 -28.300 -6.374 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.110 0.890 17 N -0.363 5.363 18 C 0.349 3.651 19 O -0.403 6.403 20 C -0.184 4.184 21 C 0.015 3.985 22 N -0.163 5.163 23 C 0.033 3.967 24 N -0.133 5.133 25 C -0.066 4.066 26 C -0.103 4.103 27 N -0.119 5.119 28 C -0.108 4.108 29 C 0.012 3.988 30 C -0.170 4.170 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.235 0.765 40 H 0.194 0.806 41 H 0.203 0.797 42 H 0.202 0.798 43 H 0.185 0.815 44 H 0.089 0.911 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.862 -27.955 -6.298 28.669 hybrid contribution 0.403 0.793 -0.016 0.889 sum -0.459 -27.162 -6.314 27.890 Atomic orbital electron populations 1.69658 1.05088 1.25654 1.57757 1.24742 0.95522 0.97691 1.03038 0.86204 0.78676 0.83889 0.77516 1.21744 1.21809 1.20754 1.19240 0.91022 0.84044 1.42586 0.91133 1.42393 1.05746 0.99677 1.88616 1.20087 0.94096 0.85511 0.92992 0.93310 1.22302 0.99767 0.95235 1.00479 1.21485 0.98504 0.95317 1.00018 1.21895 1.00291 0.98962 0.95189 1.21127 0.94443 0.85800 0.94145 0.89028 1.46097 1.10719 1.20686 1.58840 1.17785 0.87456 0.81600 0.78296 1.90819 1.13639 1.78016 1.57853 1.21232 0.95389 0.97614 1.04131 1.23356 0.88714 0.95866 0.90522 1.67486 1.38989 1.00449 1.09348 1.20113 0.87840 0.93216 0.95570 1.68355 1.37844 1.00637 1.06414 1.24378 0.95185 0.94317 0.92676 1.24269 0.91450 0.98661 0.95966 1.68616 1.38518 1.00023 1.04741 1.20219 0.93312 0.95651 1.01641 1.21820 1.01655 0.88173 0.87128 1.22107 0.99449 0.93175 1.02239 0.93531 0.78310 0.91833 0.92609 0.92117 0.92427 0.91879 0.92084 0.76526 0.80562 0.79709 0.79839 0.81507 0.91113 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.31 5.12 -53.43 -0.27 -17.58 16 10 C 0.18 3.40 2.77 -67.94 -0.19 3.21 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.14 -2.30 5.50 -26.73 -0.15 -2.45 16 13 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 14 C -0.12 -1.54 5.49 -26.73 -0.15 -1.69 16 15 C 0.15 1.88 2.45 -67.96 -0.17 1.71 16 16 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 17 N -0.71 -7.32 5.03 -54.78 -0.28 -7.59 16 18 C 0.56 6.48 7.74 -12.33 -0.10 6.38 16 19 O -0.53 -7.81 16.05 5.32 0.09 -7.73 16 20 C -0.18 -1.72 5.89 -104.83 -0.62 -2.34 16 21 C 0.19 1.71 10.69 -17.10 -0.18 1.53 16 22 N -0.45 -5.13 10.39 -12.28 -0.13 -5.26 16 23 C 0.27 3.06 7.60 -157.60 -1.20 1.86 16 24 N -0.42 -4.20 10.55 -12.39 -0.13 -4.33 16 25 C 0.11 0.62 11.21 -17.20 -0.19 0.43 16 26 C 0.07 0.38 11.22 -17.21 -0.19 0.19 16 27 N -0.40 -3.61 10.46 -10.77 -0.11 -3.72 16 28 C 0.02 0.19 6.59 -84.78 -0.56 -0.37 16 29 C 0.04 0.40 9.68 -38.38 -0.37 0.03 16 30 C -0.13 -1.90 4.85 -26.76 -0.13 -2.03 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.38 9.71 7.80 -40.82 -0.32 9.40 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 3.01 6.63 -40.82 -0.27 2.73 16 40 H 0.18 0.98 6.38 -52.49 -0.33 0.65 16 41 H 0.19 0.17 8.06 -52.49 -0.42 -0.25 16 42 H 0.18 0.15 8.06 -52.49 -0.42 -0.28 16 43 H 0.17 1.61 7.70 -52.49 -0.40 1.21 16 44 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -35.33 376.13 -9.97 -45.30 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.91 Total: 7.36 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -4.59 Total: -2.31 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -0.20 Total: -65.41 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.33 -9.97 -45.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981144983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.019 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds