Wall clock time and date at job start Sat Apr 11 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48502 * 109.46876 * 269.99800 * 3 2 1 5 5 H 1.48501 * 109.46820 * 29.99688 * 3 2 1 6 6 H 1.48499 * 109.46958 * 149.99789 * 3 2 1 7 7 C 1.38812 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99794 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47120 * 325.00483 * 10 9 7 12 12 C 1.52999 * 109.47051 * 85.00246 * 10 9 7 13 13 C 1.53002 * 109.47179 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46840 * 300.00084 * 13 12 10 15 15 C 1.52999 * 109.47303 * 59.99992 * 14 13 12 16 16 H 1.08999 * 109.46965 * 59.99658 * 15 14 13 17 17 N 1.46499 * 109.47136 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 275.27771 * 17 15 14 19 19 O 1.21553 * 120.00289 * 359.72074 * 18 17 15 20 20 C 1.47846 * 119.99557 * 179.72375 * 18 17 15 21 21 C 1.40597 * 120.28214 * 359.97438 * 20 18 17 22 22 N 1.30812 * 121.52255 * 179.97438 * 21 20 18 23 23 C 1.33754 * 121.79902 * 0.02562 * 22 21 20 24 24 N 1.33888 * 120.62592 * 180.02562 * 23 22 21 25 25 C 1.31330 * 119.85061 * 179.97438 * 24 23 22 26 26 C 1.39762 * 120.77595 * 0.02562 * 25 24 23 27 27 N 1.31299 * 120.55332 * 359.97438 * 26 25 24 28 28 C 1.33665 * 119.70897 * 359.95603 * 27 26 25 29 29 C 1.38907 * 120.27496 * 179.72117 * 20 18 17 30 30 C 1.52992 * 109.47176 * 204.99989 * 10 9 7 31 31 H 0.97001 * 119.99930 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99484 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47368 * 299.99995 * 12 10 9 34 34 H 1.09000 * 109.47077 * 59.99600 * 12 10 9 35 35 H 1.08999 * 109.47056 * 60.00198 * 13 12 10 36 36 H 1.09000 * 109.46999 * 179.97438 * 13 12 10 37 37 H 1.09006 * 109.46786 * 299.99624 * 14 13 12 38 38 H 1.08999 * 109.46630 * 180.02562 * 14 13 12 39 39 H 0.97001 * 119.99790 * 94.99484 * 17 15 14 40 40 H 1.07998 * 119.23975 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.61344 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.71899 * 179.97438 * 26 25 24 43 43 H 1.07995 * 121.00082 * 0.02562 * 29 20 18 44 44 H 1.09009 * 109.47102 * 60.00236 * 30 10 9 45 45 H 1.08999 * 109.47499 * 300.00261 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5888 12 6 2.4218 -4.0356 1.4375 13 6 3.1863 -5.3609 1.4376 14 6 2.3085 -6.4560 0.8281 15 6 1.9447 -6.0772 -0.6089 16 1 2.8554 -5.9713 -1.1984 17 7 1.1038 -7.1254 -1.1922 18 6 1.6723 -8.2108 -1.7537 19 8 2.8828 -8.3176 -1.7805 20 6 0.8235 -9.2715 -2.3369 21 6 -0.5773 -9.1542 -2.3086 22 7 -1.3514 -10.0777 -2.8178 23 6 -0.8523 -11.1789 -3.3900 24 7 -1.6665 -12.1091 -3.9043 25 6 -1.1600 -13.1843 -4.4630 26 6 0.2233 -13.3724 -4.5281 27 7 1.0430 -12.4751 -4.0311 28 6 0.5500 -11.3723 -3.4590 29 6 1.4034 -10.3898 -2.9221 30 6 1.1809 -4.7521 -0.6091 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0002 33 1 3.0468 -3.2552 1.8719 34 1 1.5111 -4.1418 2.0270 35 1 4.0970 -5.2551 0.8482 36 1 3.4459 -5.6306 2.4614 37 1 1.3978 -6.5618 1.4177 38 1 2.8530 -7.4002 0.8286 39 1 0.1378 -7.0401 -1.1707 40 1 -1.0246 -8.2816 -1.8561 41 1 -1.8203 -13.9324 -4.8763 42 1 0.6214 -14.2632 -4.9911 43 1 2.4766 -10.5039 -2.9609 44 1 0.9217 -4.4822 -1.6329 45 1 0.2702 -4.8584 -0.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981144983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:04 Heat of formation + Delta-G solvation = 27.859405 kcal Electronic energy + Delta-G solvation = -28165.271061 eV Core-core repulsion = 24181.859542 eV Total energy + Delta-G solvation = -3983.411519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.85523 -41.29992 -39.66001 -38.89265 -36.34679 -36.12383 -34.95086 -33.24078 -32.92702 -32.42235 -30.61133 -29.40111 -27.16015 -26.30110 -25.68292 -24.11372 -23.53256 -23.09787 -21.94268 -21.08858 -20.33041 -19.66645 -19.10647 -18.89143 -17.75490 -17.24541 -16.82964 -16.54156 -16.22045 -16.10410 -15.89668 -15.78037 -15.42014 -15.17925 -15.00312 -14.85594 -14.48137 -14.25314 -13.97313 -13.91776 -13.57547 -13.38941 -13.04617 -12.88164 -12.87946 -12.82746 -12.25232 -12.14828 -12.04355 -12.01767 -11.95302 -11.64157 -11.50792 -11.36640 -11.03841 -10.85743 -10.62804 -10.39157 -10.10252 -9.94233 -8.97656 -7.92650 -5.19912 -1.28094 -0.94445 0.51747 1.19750 1.48179 1.48840 1.57132 1.83623 2.01253 2.35931 2.57429 2.79424 2.81784 2.90318 3.31997 3.40737 3.44716 3.56494 3.64614 3.74973 3.88433 3.90901 4.05709 4.22939 4.31145 4.32751 4.33968 4.45807 4.55575 4.60377 4.60813 4.69113 4.77571 4.79827 5.02869 5.12729 5.19385 5.21643 5.25572 5.37449 5.41189 5.52709 5.56025 5.68371 5.78605 6.28836 6.30247 6.38173 6.70866 7.01964 7.36827 8.13402 8.36447 9.30571 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.001944 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.803558 B =14397.334622 C =15044.279242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.037 0.963 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.118 4.118 15 C 0.159 3.841 16 H 0.075 0.925 17 N -0.701 5.701 18 C 0.570 3.430 19 O -0.563 6.563 20 C -0.179 4.179 21 C 0.197 3.803 22 N -0.480 5.480 23 C 0.252 3.748 24 N -0.458 5.458 25 C 0.133 3.867 26 C 0.091 3.909 27 N -0.434 5.434 28 C 0.003 3.997 29 C 0.035 3.965 30 C -0.117 4.117 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.415 0.585 40 H 0.205 0.795 41 H 0.235 0.765 42 H 0.234 0.766 43 H 0.164 0.836 44 H 0.064 0.936 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 -30.950 -6.898 31.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.055 0.945 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.093 0.907 17 N -0.352 5.352 18 C 0.356 3.644 19 O -0.442 6.442 20 C -0.186 4.186 21 C 0.020 3.980 22 N -0.189 5.189 23 C 0.013 3.987 24 N -0.173 5.173 25 C -0.047 4.047 26 C -0.086 4.086 27 N -0.148 5.148 28 C -0.122 4.122 29 C 0.008 3.992 30 C -0.156 4.156 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.222 0.778 41 H 0.251 0.749 42 H 0.250 0.750 43 H 0.181 0.819 44 H 0.083 0.917 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.971 -30.611 -6.800 31.373 hybrid contribution 0.445 1.352 0.027 1.423 sum -0.526 -29.260 -6.773 30.038 Atomic orbital electron populations 1.69799 1.06384 1.25868 1.59815 1.25483 0.96362 1.00806 1.04158 0.85229 0.77761 0.80023 0.77312 1.21642 1.22304 1.19640 1.19580 0.91314 0.85326 1.40491 0.90972 1.42570 1.05475 1.00777 1.88665 1.20313 0.93906 0.84743 0.94285 0.94510 1.22106 0.99677 0.96401 0.98564 1.21410 0.98113 0.93694 1.01291 1.21835 1.00681 0.98415 0.94704 1.20830 0.93771 0.85423 0.94522 0.90661 1.45869 1.11364 1.19759 1.58228 1.17929 0.87038 0.81761 0.77628 1.90801 1.15255 1.78829 1.59356 1.21015 0.95564 0.97147 1.04885 1.23703 0.88150 0.96217 0.89943 1.67508 1.39757 1.01246 1.10429 1.20346 0.88434 0.93708 0.96169 1.68419 1.38568 1.02040 1.08306 1.25306 0.96250 0.93350 0.89789 1.25177 0.91292 0.98733 0.93440 1.68677 1.39596 1.00477 1.06075 1.20210 0.92990 0.96452 1.02548 1.21879 1.01607 0.88538 0.87217 1.21890 0.99263 0.92771 1.01662 0.94138 0.79382 0.94167 0.92724 0.92282 0.90668 0.90467 0.91742 0.74698 0.77826 0.74897 0.75007 0.81862 0.91727 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.24 -12.84 9.93 84.03 0.83 -12.00 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -35.62 5.12 -322.96 -1.65 -37.28 16 10 C 0.18 6.54 2.77 44.99 0.12 6.66 16 11 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 12 C -0.13 -4.22 5.50 30.59 0.17 -4.05 16 13 C -0.11 -2.73 5.92 30.60 0.18 -2.54 16 14 C -0.12 -2.70 5.49 30.60 0.17 -2.53 16 15 C 0.16 3.86 2.45 44.97 0.11 3.97 16 16 H 0.08 2.13 7.58 -2.39 -0.02 2.12 16 17 N -0.70 -13.55 5.03 -445.49 -2.24 -15.79 16 18 C 0.57 12.86 7.74 86.79 0.67 13.53 16 19 O -0.56 -16.78 16.05 -3.88 -0.06 -16.84 16 20 C -0.18 -3.48 5.89 -20.00 -0.12 -3.60 16 21 C 0.20 3.38 10.69 85.42 0.91 4.30 16 22 N -0.48 -10.76 10.39 -192.76 -2.00 -12.77 16 23 C 0.25 5.57 7.60 134.96 1.03 6.60 16 24 N -0.46 -8.56 10.55 -193.10 -2.04 -10.60 16 25 C 0.13 1.02 11.21 85.14 0.95 1.97 16 26 C 0.09 0.65 11.22 85.14 0.96 1.60 16 27 N -0.43 -7.12 10.46 -187.98 -1.97 -9.09 16 28 C 0.00 0.05 6.59 40.35 0.27 0.32 16 29 C 0.04 0.73 9.68 23.05 0.22 0.95 16 30 C -0.12 -3.33 4.85 30.57 0.15 -3.18 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.37 19.29 7.80 -92.71 -0.72 18.56 16 33 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 5.49 6.63 -92.71 -0.61 4.87 16 40 H 0.21 1.99 6.38 -2.91 -0.02 1.97 16 41 H 0.23 -0.75 8.06 -2.91 -0.02 -0.77 16 42 H 0.23 -0.83 8.06 -2.91 -0.02 -0.86 16 43 H 0.16 3.32 7.70 -2.91 -0.02 3.30 16 44 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -79.49 376.13 -0.85 -80.34 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.29 Total: 23.88 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 7.09 Total: 8.16 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -9.62 Total: -143.60 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.06 Total: -16.84 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.49 -0.85 -80.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981144983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.200 kcal (2) G-P(sol) polarization free energy of solvation -79.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds