Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00030 * 2 1 4 4 H 1.48494 * 109.47144 * 269.99926 * 3 2 1 5 5 H 1.48497 * 109.46917 * 30.00024 * 3 2 1 6 6 H 1.48499 * 109.46783 * 149.99612 * 3 2 1 7 7 C 1.38811 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00593 * 153.89112 * 7 2 1 9 9 N 1.36943 * 119.99594 * 333.89207 * 7 2 1 10 10 C 1.46900 * 120.69071 * 326.02317 * 9 7 2 11 11 C 1.52667 * 109.34280 * 235.31014 * 10 9 7 12 12 C 1.53188 * 109.42676 * 303.76596 * 11 10 9 13 13 C 1.52626 * 109.35306 * 58.93025 * 12 11 10 14 14 C 1.53465 * 113.68389 * 74.06043 * 13 12 11 15 15 N 1.47666 * 85.96930 * 91.17566 * 14 13 12 16 16 C 1.34784 * 134.45433 * 204.28577 * 15 14 13 17 17 O 1.21586 * 119.99701 * 174.41988 * 16 15 14 18 18 C 1.47503 * 119.99452 * 354.42307 * 16 15 14 19 19 C 1.36877 * 120.61359 * 354.75886 * 18 16 15 20 20 C 1.40144 * 119.25898 * 179.97438 * 19 18 16 21 21 N 1.31140 * 120.46136 * 0.02562 * 20 19 18 22 22 C 1.33708 * 121.18700 * 359.97438 * 21 20 19 23 23 C 1.39061 * 132.56016 * 180.02562 * 22 21 20 24 24 C 1.38507 * 107.66651 * 179.28465 * 23 22 21 25 25 N 1.31528 * 109.04003 * 0.65370 * 24 23 22 26 26 N 1.37297 * 120.63376 * 359.74557 * 22 21 20 27 27 C 1.47675 * 91.09597 * 24.28666 * 15 14 13 28 28 C 1.47119 * 120.68753 * 146.29406 * 9 7 2 29 29 H 0.96999 * 119.99634 * 174.10435 * 1 2 3 30 30 H 1.09005 * 109.53341 * 355.23212 * 10 9 7 31 31 H 1.08992 * 109.53670 * 115.47099 * 10 9 7 32 32 H 1.08997 * 109.56250 * 183.71694 * 11 10 9 33 33 H 1.09004 * 109.34604 * 63.68629 * 11 10 9 34 34 H 1.08997 * 109.48756 * 298.96527 * 12 11 10 35 35 H 1.09001 * 109.48617 * 178.89532 * 12 11 10 36 36 H 1.09003 * 113.78820 * 205.43974 * 14 13 12 37 37 H 1.08994 * 113.79058 * 336.90899 * 14 13 12 38 38 H 1.07998 * 120.37581 * 0.02562 * 19 18 16 39 39 H 1.07992 * 119.76716 * 180.02562 * 20 19 18 40 40 H 1.08003 * 126.16257 * 359.96378 * 23 22 21 41 41 H 1.08001 * 125.48313 * 180.09646 * 24 23 22 42 42 H 1.08995 * 113.79540 * 221.45238 * 27 15 14 43 43 H 1.08996 * 113.90145 * 89.98264 * 27 15 14 44 44 H 1.09006 * 109.63854 * 248.30630 * 28 9 7 45 45 H 1.08991 * 109.63971 * 8.92226 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0076 -1.2496 -0.4121 9 7 1.4304 -2.3278 0.5209 10 6 0.5210 -2.2386 1.6711 11 6 1.0238 -3.1532 2.7853 12 6 1.1579 -4.5822 2.2500 13 6 2.1298 -4.5924 1.0732 14 6 3.5997 -4.4379 1.4864 15 7 3.6305 -5.9131 1.5428 16 6 4.3853 -6.8171 2.1984 17 8 4.1146 -8.0004 2.1282 18 6 5.5397 -6.3708 3.0008 19 6 5.9203 -5.0560 3.0033 20 6 7.0211 -4.6630 3.7765 21 7 7.6808 -5.5437 4.4899 22 6 7.3249 -6.8325 4.5008 23 6 7.8416 -7.9455 5.1551 24 6 7.0606 -9.0361 4.8100 25 7 6.1191 -8.6440 3.9795 26 7 6.2505 -7.2678 3.7651 27 6 2.5030 -6.0013 0.5932 28 6 1.7099 -3.6522 -0.0556 29 1 -0.4849 -0.8356 -0.0863 30 1 0.4895 -1.2105 2.0320 31 1 -0.4788 -2.5513 1.3703 32 1 0.3168 -3.1405 3.6148 33 1 1.9961 -2.8013 3.1302 34 1 0.1827 -4.9396 1.9194 35 1 1.5355 -5.2322 3.0393 36 1 4.2333 -4.0143 0.7071 37 1 3.7359 -3.9578 2.4554 38 1 5.3779 -4.3294 2.4167 39 1 7.3282 -3.6277 3.7848 40 1 8.6914 -7.9554 5.8216 41 1 7.2071 -10.0476 5.1591 42 1 1.7681 -6.7632 0.8527 43 1 2.8084 -6.0430 -0.4522 44 1 0.8123 -4.0381 -0.5389 45 1 2.5163 -3.5717 -0.7844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981812484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = 158.785378 kcal Electronic energy + Delta-G solvation = -29973.302679 eV Core-core repulsion = 25995.568537 eV Total energy + Delta-G solvation = -3977.734143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.57182 -40.93593 -38.66584 -38.12950 -36.19815 -34.27934 -32.99834 -31.58292 -30.78729 -30.19342 -29.20405 -26.84481 -26.55510 -25.32223 -24.91977 -23.61833 -22.46549 -22.27332 -20.91024 -19.67659 -18.48444 -18.35264 -17.80428 -17.39826 -16.84693 -16.55399 -16.23139 -15.74461 -15.23033 -14.64261 -14.44897 -14.34346 -14.15645 -13.98477 -13.68421 -13.55254 -13.39298 -13.10316 -13.05689 -12.89820 -12.55677 -12.15331 -11.96325 -11.62783 -11.43294 -11.39251 -11.23967 -10.84746 -10.62453 -10.55551 -10.37126 -10.20270 -10.13913 -9.92372 -9.80955 -9.77118 -9.39248 -8.87859 -8.44329 -8.21250 -6.97360 -6.18494 -3.42104 -0.16924 0.56070 1.59631 2.21516 2.46882 2.69069 3.20123 3.41816 3.45011 3.53288 3.59994 3.69047 3.92143 4.27428 4.46496 4.54776 4.68215 4.78867 4.82248 4.95404 5.07448 5.16736 5.18454 5.28001 5.35368 5.37202 5.44845 5.47442 5.54385 5.56441 5.65112 5.73153 5.76926 5.99116 6.06064 6.13234 6.22942 6.29183 6.33557 6.44048 6.53023 6.56196 6.91916 7.05762 7.18829 7.26414 7.38346 7.78162 7.92734 8.47161 8.98305 9.70532 10.18024 11.07955 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.003032 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.504822 B = 9232.644323 C =10261.738741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.015 4.015 3 Si 1.062 2.938 4 H -0.294 1.294 5 H -0.286 1.286 6 H -0.291 1.291 7 C -0.358 4.358 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.152 3.848 11 C -0.136 4.136 12 C -0.085 4.085 13 C -0.099 4.099 14 C 0.106 3.894 15 N -0.629 5.629 16 C 0.570 3.430 17 O -0.500 6.500 18 C 0.158 3.842 19 C -0.194 4.194 20 C 0.178 3.822 21 N -0.449 5.449 22 C 0.246 3.754 23 C -0.255 4.255 24 C 0.075 3.925 25 N -0.274 5.274 26 N -0.292 5.292 27 C 0.121 3.879 28 C 0.162 3.838 29 H 0.270 0.730 30 H 0.073 0.927 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.183 0.817 39 H 0.190 0.810 40 H 0.165 0.835 41 H 0.199 0.801 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.025 0.975 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 -10.367 7.041 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.219 4.219 3 Si 0.892 3.108 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.217 1.217 7 C -0.487 4.487 8 H 0.071 0.929 9 N -0.316 5.316 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.123 4.123 13 C -0.101 4.101 14 C -0.016 4.016 15 N -0.365 5.365 16 C 0.357 3.643 17 O -0.374 6.374 18 C 0.039 3.961 19 C -0.219 4.219 20 C -0.007 4.007 21 N -0.160 5.160 22 C 0.019 3.981 23 C -0.286 4.286 24 C -0.104 4.104 25 N -0.098 5.098 26 N -0.066 5.066 27 C 0.000 4.000 28 C 0.035 3.965 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.199 0.801 39 H 0.207 0.793 40 H 0.182 0.818 41 H 0.216 0.784 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.042 0.958 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.611 -9.955 7.075 16.178 hybrid contribution 0.361 -1.624 -0.076 1.666 sum 10.973 -11.579 6.999 17.420 Atomic orbital electron populations 1.70748 1.06834 1.30486 1.46355 1.25910 0.96419 1.01699 0.97917 0.83592 0.74809 0.75930 0.76493 1.22097 1.21202 1.21719 1.19823 0.97933 0.88475 1.42493 0.92912 1.44055 1.54794 1.01560 1.31225 1.20792 0.91657 0.98484 0.86412 1.22001 1.01244 0.95152 0.99133 1.21139 0.98049 0.97725 0.95361 1.22606 0.94149 0.94300 0.99064 1.23598 0.97403 0.78136 1.02441 1.49993 1.34026 1.08097 1.44358 1.17090 0.81191 0.85435 0.80633 1.90910 1.68962 1.15409 1.62120 1.20389 0.94193 0.88094 0.93395 1.22845 1.00873 0.94225 1.03919 1.23474 0.89079 0.99997 0.88179 1.67962 1.28910 0.98856 1.20281 1.20828 0.88976 0.92083 0.96192 1.21027 1.07505 0.88873 1.11228 1.24018 0.91779 1.00460 0.94108 1.78364 1.24069 0.84852 1.22503 1.47146 1.21070 1.08311 1.30026 1.23366 0.85699 0.97906 0.93064 1.20814 0.98243 0.86004 0.91408 0.91925 0.90859 0.96471 0.92754 0.92344 0.91740 0.93090 0.88323 0.89221 0.80061 0.79344 0.81795 0.78398 0.89777 0.88970 0.95756 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.20 12.66 55.49 0.70 -24.49 16 2 C -0.02 -0.40 4.61 -17.43 -0.08 -0.48 16 3 Si 1.06 23.08 29.99 -169.99 -5.10 17.98 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.36 -8.76 9.41 -15.06 -0.14 -8.90 16 8 H 0.05 1.29 7.95 -52.49 -0.42 0.87 16 9 N -0.59 -12.61 2.76 -172.75 -0.48 -13.08 16 10 C 0.15 3.09 4.77 -4.00 -0.02 3.08 16 11 C -0.14 -2.17 5.99 -26.80 -0.16 -2.33 16 12 C -0.09 -1.21 5.02 -26.83 -0.13 -1.35 16 13 C -0.10 -1.36 0.87 -154.43 -0.13 -1.49 16 14 C 0.11 1.28 5.22 -3.17 -0.02 1.27 16 15 N -0.63 -8.33 3.44 -181.70 -0.62 -8.95 16 16 C 0.57 8.88 8.01 -12.48 -0.10 8.78 16 17 O -0.50 -9.55 16.78 5.29 0.09 -9.46 16 18 C 0.16 2.23 6.81 -81.98 -0.56 1.67 16 19 C -0.19 -2.04 9.17 -39.36 -0.36 -2.40 16 20 C 0.18 1.68 11.26 -17.13 -0.19 1.49 16 21 N -0.45 -5.49 10.44 -12.23 -0.13 -5.62 16 22 C 0.25 3.38 7.93 -155.55 -1.23 2.14 16 23 C -0.26 -2.95 10.91 -39.18 -0.43 -3.38 16 24 C 0.07 0.86 11.93 -17.58 -0.21 0.65 16 25 N -0.27 -4.32 11.64 30.46 0.35 -3.96 16 26 N -0.29 -4.47 3.94 -8.87 -0.03 -4.51 16 27 C 0.12 1.52 7.98 -3.17 -0.03 1.49 16 28 C 0.16 2.77 5.71 -3.81 -0.02 2.75 16 29 H 0.27 7.59 7.18 -40.82 -0.29 7.30 16 30 H 0.07 1.71 6.71 -51.93 -0.35 1.36 16 31 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.93 7.37 -51.93 -0.38 0.55 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 36 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 37 H 0.09 1.03 6.07 -51.93 -0.32 0.72 16 38 H 0.18 1.59 4.04 -52.49 -0.21 1.37 16 39 H 0.19 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 43 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -33.31 364.41 -9.33 -42.64 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.79 Total: 0.98 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.82 Total: 2.99 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.21 Total: -60.62 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.10 Total: 17.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.31 -9.33 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981812484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.426 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds