Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 120.00045 * 2 1 4 4 H 1.48498 * 109.46845 * 239.99713 * 3 2 1 5 5 H 1.48498 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47009 * 119.99768 * 3 2 1 7 7 C 1.38813 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 155.05345 * 7 2 1 9 9 N 1.36936 * 119.99974 * 335.06110 * 7 2 1 10 10 C 1.46896 * 120.69032 * 331.85629 * 9 7 2 11 11 C 1.52673 * 109.34236 * 235.31219 * 10 9 7 12 12 C 1.53177 * 109.42917 * 303.76841 * 11 10 9 13 13 C 1.52635 * 109.35688 * 58.92917 * 12 11 10 14 14 C 1.53461 * 113.68276 * 74.05615 * 13 12 11 15 15 N 1.47665 * 85.96545 * 91.17756 * 14 13 12 16 16 C 1.34785 * 134.45760 * 204.28328 * 15 14 13 17 17 O 1.21584 * 120.00439 * 180.02562 * 16 15 14 18 18 C 1.47584 * 119.99451 * 0.02562 * 16 15 14 19 19 C 1.36477 * 125.91822 * 180.02562 * 18 16 15 20 20 N 1.36190 * 107.01428 * 179.97438 * 19 18 16 21 21 C 1.36669 * 132.44721 * 180.02562 * 20 19 18 22 22 C 1.35477 * 119.10100 * 179.97438 * 21 20 19 23 23 C 1.40297 * 119.35963 * 0.02562 * 22 21 20 24 24 N 1.31144 * 120.41570 * 359.97438 * 23 22 21 25 25 C 1.34292 * 120.93941 * 0.02562 * 24 23 22 26 26 N 1.32207 * 131.65112 * 180.33436 * 25 24 23 27 27 C 1.47676 * 91.09496 * 24.28688 * 15 14 13 28 28 C 1.47122 * 120.68750 * 152.13580 * 9 7 2 29 29 H 0.97000 * 119.99828 * 174.26566 * 1 2 3 30 30 H 1.08995 * 109.53257 * 355.23673 * 10 9 7 31 31 H 1.08996 * 109.53656 * 115.47168 * 10 9 7 32 32 H 1.09000 * 109.55444 * 183.71642 * 11 10 9 33 33 H 1.08999 * 109.34543 * 63.69027 * 11 10 9 34 34 H 1.09000 * 109.49363 * 298.96772 * 12 11 10 35 35 H 1.08998 * 109.49156 * 178.89383 * 12 11 10 36 36 H 1.08996 * 113.79364 * 205.44531 * 14 13 12 37 37 H 1.09009 * 113.79001 * 336.92250 * 14 13 12 38 38 H 1.08000 * 126.48693 * 359.93688 * 19 18 16 39 39 H 1.07998 * 120.45145 * 359.93792 * 21 20 19 40 40 H 1.08003 * 120.32227 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.79474 * 179.97438 * 23 22 21 42 42 H 1.08996 * 113.79208 * 221.44569 * 27 15 14 43 43 H 1.08996 * 113.79180 * 89.96939 * 27 15 14 44 44 H 1.09001 * 109.63282 * 248.30798 * 28 9 7 45 45 H 1.09003 * 109.63687 * 8.91545 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0147 -1.2459 -0.3939 9 7 1.4214 -2.3325 0.5011 10 6 0.3968 -2.2426 1.5499 11 6 0.8162 -3.1002 2.7414 12 6 1.0558 -4.5392 2.2741 13 6 2.1425 -4.5487 1.2023 14 6 3.5560 -4.3227 1.7554 15 7 3.6343 -5.7930 1.8679 16 6 4.3505 -6.6448 2.6282 17 8 4.2031 -7.8449 2.5003 18 6 5.3137 -6.1207 3.6159 19 6 6.0984 -6.8695 4.4443 20 7 6.8351 -5.9995 5.1894 21 6 7.7738 -6.1860 6.1650 22 6 8.3508 -5.1034 6.7398 23 6 7.9721 -3.8188 6.3218 24 7 7.0689 -3.6653 5.3835 25 6 6.4877 -4.7283 4.8040 26 7 5.5746 -4.8204 3.8524 27 6 2.6134 -5.9563 0.8134 28 6 1.8060 -3.6627 0.0039 29 1 -0.4850 -0.8359 -0.0839 30 1 0.2915 -1.2056 1.8685 31 1 -0.5552 -2.6042 1.1615 32 1 0.0283 -3.0888 3.4945 33 1 1.7349 -2.6991 3.1694 34 1 0.1331 -4.9456 1.8601 35 1 1.3743 -5.1480 3.1203 36 1 4.2499 -3.8996 1.0292 37 1 3.5752 -3.8067 2.7155 38 1 6.1288 -7.9477 4.4989 39 1 8.0514 -7.1829 6.4741 40 1 9.0946 -5.2280 7.5129 41 1 8.4274 -2.9508 6.7755 42 1 1.8839 -6.7381 1.0249 43 1 3.0270 -6.0192 -0.1931 44 1 0.9770 -4.0992 -0.5532 45 1 2.6791 -3.5737 -0.6426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981871037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 117.536583 kcal Electronic energy + Delta-G solvation = -29718.530145 eV Core-core repulsion = 25739.007321 eV Total energy + Delta-G solvation = -3979.522825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.15393 -41.88368 -39.90202 -38.88397 -37.67881 -35.73507 -34.57947 -32.50689 -32.25417 -31.30595 -30.51746 -27.82462 -27.32844 -27.10033 -25.82853 -24.34026 -24.05626 -23.77966 -22.27354 -20.64731 -19.48228 -19.28730 -19.18254 -18.75477 -17.83066 -17.60666 -17.11218 -16.84755 -16.66365 -16.25916 -15.89540 -15.45567 -15.30595 -15.24005 -15.19527 -14.96538 -14.69188 -14.10697 -13.97761 -13.88534 -13.55323 -13.40260 -13.30136 -12.97505 -12.93364 -12.71867 -12.49551 -12.02768 -11.90645 -11.82882 -11.81102 -11.69314 -11.35174 -11.17341 -11.06133 -10.84952 -10.40174 -10.30263 -9.81628 -9.40719 -8.86421 -8.19308 -5.34143 -0.55644 -0.06858 0.82394 1.18694 1.59687 1.67357 1.71384 1.85787 2.15210 2.42040 2.53930 2.67284 3.07352 3.20683 3.33317 3.43892 3.59431 3.65426 3.75798 3.82588 3.91640 4.06091 4.17916 4.23961 4.27203 4.37122 4.45325 4.53195 4.56919 4.62968 4.65692 4.67685 4.77575 4.84893 4.86552 4.96317 5.02825 5.09552 5.16939 5.18453 5.24041 5.34456 5.48975 5.50528 5.88714 6.31548 6.45171 6.49013 6.71986 6.98746 7.10544 7.82233 8.27399 9.05835 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.003329 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.627826 B = 8408.242559 C =10087.413966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.073 4.073 3 Si 1.108 2.892 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.349 4.349 8 H 0.049 0.951 9 N -0.612 5.612 10 C 0.157 3.843 11 C -0.125 4.125 12 C -0.073 4.073 13 C -0.101 4.101 14 C 0.148 3.852 15 N -0.624 5.624 16 C 0.616 3.384 17 O -0.568 6.568 18 C -0.014 4.014 19 C 0.002 3.998 20 N -0.404 5.404 21 C 0.102 3.898 22 C -0.184 4.184 23 C 0.185 3.815 24 N -0.491 5.491 25 C 0.360 3.640 26 N -0.487 5.487 27 C 0.125 3.875 28 C 0.166 3.834 29 H 0.256 0.744 30 H 0.043 0.957 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.229 0.771 39 H 0.225 0.775 40 H 0.222 0.778 41 H 0.222 0.778 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.029 0.971 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.722 -15.795 17.036 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.270 4.270 3 Si 0.934 3.066 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.478 4.478 8 H 0.067 0.933 9 N -0.336 5.336 10 C 0.031 3.969 11 C -0.164 4.164 12 C -0.110 4.110 13 C -0.103 4.103 14 C 0.025 3.975 15 N -0.356 5.356 16 C 0.405 3.595 17 O -0.449 6.449 18 C -0.146 4.146 19 C -0.135 4.135 20 N -0.080 5.080 21 C -0.027 4.027 22 C -0.206 4.206 23 C -0.001 4.001 24 N -0.205 5.205 25 C 0.010 3.990 26 N -0.211 5.211 27 C 0.003 3.997 28 C 0.041 3.959 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.241 0.759 40 H 0.238 0.762 41 H 0.238 0.762 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.047 0.953 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.777 -13.529 16.237 27.617 hybrid contribution 0.459 -2.601 0.159 2.646 sum 18.237 -16.130 16.397 29.353 Atomic orbital electron populations 1.70885 1.07478 1.29497 1.50627 1.27016 0.96601 1.04478 0.98875 0.82938 0.73934 0.72635 0.77138 1.20164 1.21713 1.21128 1.20157 0.97120 0.89738 1.40814 0.93322 1.44262 1.46537 1.01743 1.41038 1.20679 0.89997 0.97996 0.88215 1.21830 1.00675 0.95844 0.98018 1.21020 0.97353 0.96088 0.96555 1.22497 0.94953 0.95066 0.97813 1.22949 0.94795 0.79039 1.00705 1.49928 1.39973 1.08796 1.36903 1.16701 0.78522 0.84450 0.79809 1.90742 1.68418 1.14668 1.71057 1.20582 1.02486 0.89485 1.02043 1.22882 0.96698 0.97828 0.96072 1.44046 1.27855 1.09561 1.26585 1.23306 0.87318 1.05291 0.86755 1.22505 1.03772 0.90417 1.03908 1.24357 0.87588 1.00710 0.87471 1.68083 1.12335 1.27522 1.12551 1.22061 0.98330 0.81151 0.97492 1.70781 1.15649 1.19197 1.15508 1.23340 0.88139 0.96700 0.91500 1.20844 0.97892 0.84631 0.92579 0.93449 0.93870 0.97194 0.90918 0.93853 0.90725 0.92335 0.90874 0.91062 0.75419 0.75877 0.76153 0.76156 0.88639 0.87932 0.95307 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 12.38 21.65 0.27 -57.94 16 2 C -0.07 -4.24 4.69 84.86 0.40 -3.84 16 3 Si 1.11 52.55 29.99 68.60 2.06 54.61 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.35 -19.79 9.50 84.03 0.80 -18.99 16 8 H 0.05 2.78 7.94 -2.91 -0.02 2.76 16 9 N -0.61 -30.89 2.86 -700.45 -2.00 -32.89 16 10 C 0.16 7.56 4.62 86.20 0.40 7.96 16 11 C -0.12 -4.91 5.99 30.54 0.18 -4.72 16 12 C -0.07 -2.48 5.02 30.53 0.15 -2.33 16 13 C -0.10 -3.52 0.87 -52.04 -0.05 -3.56 16 14 C 0.15 5.47 6.84 86.31 0.59 6.07 16 15 N -0.62 -21.34 3.45 -847.08 -2.92 -24.26 16 16 C 0.62 21.48 8.05 86.71 0.70 22.17 16 17 O -0.57 -21.02 17.60 -3.98 -0.07 -21.09 16 18 C -0.01 -0.44 6.90 40.76 0.28 -0.16 16 19 C 0.00 0.04 11.47 83.61 0.96 1.00 16 20 N -0.40 -7.97 2.93 -356.82 -1.05 -9.02 16 21 C 0.10 0.73 11.05 83.30 0.92 1.65 16 22 C -0.18 -0.62 10.06 22.13 0.22 -0.40 16 23 C 0.19 2.01 11.27 85.30 0.96 2.97 16 24 N -0.49 -12.35 10.49 -197.16 -2.07 -14.41 16 25 C 0.36 10.47 8.90 261.35 2.33 12.80 16 26 N -0.49 -17.32 9.68 -188.81 -1.83 -19.15 16 27 C 0.12 3.74 7.97 86.30 0.69 4.43 16 28 C 0.17 6.84 5.71 86.19 0.49 7.33 16 29 H 0.26 15.99 6.77 -92.71 -0.63 15.36 16 30 H 0.04 2.38 6.23 -2.39 -0.01 2.37 16 31 H 0.01 0.49 7.94 -2.39 -0.02 0.47 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.04 1.84 7.37 -2.39 -0.02 1.83 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 1.93 8.02 -2.39 -0.02 1.91 16 36 H 0.07 2.84 7.97 -2.39 -0.02 2.82 16 37 H 0.07 2.95 6.70 -2.38 -0.02 2.93 16 38 H 0.23 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.22 -0.65 8.06 -2.91 -0.02 -0.68 16 40 H 0.22 -1.66 8.06 -2.91 -0.02 -1.68 16 41 H 0.22 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.10 2.61 8.09 -2.39 -0.02 2.59 16 43 H 0.10 2.76 8.09 -2.39 -0.02 2.74 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 2.33 7.78 -2.39 -0.02 2.31 16 Total: -1.00 -86.80 369.17 3.57 -83.23 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.16 Total: 8.54 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 10.03 Total: 32.38 kcal Atomic # 7 Polarization: -148.07 SS G_CDS: -9.60 Total: -157.67 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.07 Total: -21.09 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.06 Total: 54.61 kcal Total: -86.80 3.57 -83.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981871037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.769 kcal (2) G-P(sol) polarization free energy of solvation -86.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds