Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21713 * 120.00381 * 180.02562 * 16 15 14 18 18 C 1.46584 * 119.99965 * 0.02562 * 16 15 14 19 19 C 1.40644 * 126.54053 * 0.02562 * 18 16 15 20 20 N 1.30698 * 108.73242 * 179.97438 * 19 18 16 21 21 N 1.39905 * 109.51324 * 359.97438 * 20 19 18 22 22 C 1.36320 * 132.16292 * 180.02562 * 21 20 19 23 23 C 1.35752 * 119.15810 * 179.32991 * 22 21 20 24 24 C 1.39964 * 119.35396 * 0.56004 * 23 22 21 25 25 N 1.31495 * 120.10905 * 359.61736 * 24 23 22 26 26 C 1.33387 * 120.85167 * 0.02562 * 25 24 23 27 27 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 28 28 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 29 29 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 30 30 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 31 31 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 32 32 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 33 33 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 34 34 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 35 35 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 36 36 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 37 37 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 38 38 H 1.08007 * 125.63508 * 359.96246 * 19 18 16 39 39 H 1.08002 * 120.41909 * 359.97438 * 22 21 20 40 40 H 1.07998 * 120.32257 * 180.17548 * 23 22 21 41 41 H 1.08002 * 119.94484 * 179.63904 * 24 23 22 42 42 H 1.08997 * 113.79514 * 221.44885 * 27 15 14 43 43 H 1.08997 * 113.89758 * 89.98544 * 27 15 14 44 44 H 1.09002 * 109.63459 * 248.30727 * 28 9 7 45 45 H 1.09000 * 109.64288 * 8.91958 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2035 -7.8477 2.4946 18 6 5.3076 -6.1266 3.6047 19 6 5.5861 -4.7731 3.8670 20 7 6.4927 -4.7055 4.8060 21 7 6.8509 -5.9981 5.2038 22 6 7.7368 -6.4572 6.1326 23 6 7.8685 -7.7958 6.3161 24 6 7.1018 -8.6733 5.5407 25 7 6.2580 -8.2009 4.6497 26 6 6.1183 -6.8867 4.4692 27 6 2.6137 -5.9569 0.8092 28 6 1.8061 -3.6627 0.0013 29 1 -0.4849 -0.8358 -0.0839 30 1 0.2917 -1.2069 1.8678 31 1 -0.5551 -2.6052 1.1597 32 1 0.0287 -3.0912 3.4924 33 1 1.7352 -2.7012 3.1675 34 1 0.1333 -4.9470 1.8567 35 1 1.3747 -5.1502 3.1167 36 1 4.2501 -3.9002 1.0263 37 1 3.5755 -3.8085 2.7125 38 1 5.1268 -3.9291 3.3739 39 1 8.3188 -5.7645 6.7224 40 1 8.5626 -8.1800 7.0488 41 1 7.2033 -9.7402 5.6747 42 1 1.8842 -6.7388 1.0201 43 1 3.0254 -6.0195 -0.1981 44 1 0.9771 -4.0989 -0.5560 45 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981930977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 152.619962 kcal Electronic energy + Delta-G solvation = -29759.919212 eV Core-core repulsion = 25781.917717 eV Total energy + Delta-G solvation = -3978.001495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.74290 -40.50628 -38.52798 -37.81166 -35.95883 -34.36494 -32.80827 -31.60731 -30.78201 -30.26682 -29.14594 -26.26125 -26.01822 -25.22910 -25.18141 -23.60633 -22.51809 -22.32392 -20.67762 -19.55556 -18.31220 -18.08372 -17.51808 -17.35457 -17.07066 -16.51006 -15.94793 -15.52389 -15.43406 -14.62271 -14.48189 -14.20082 -13.87414 -13.74517 -13.52778 -13.46760 -13.38438 -13.06141 -12.98101 -12.75035 -12.32514 -11.93701 -11.84729 -11.71087 -11.53447 -11.31574 -10.99163 -10.70688 -10.41231 -10.20800 -10.13603 -10.10212 -9.99511 -9.98631 -9.78371 -9.53075 -9.25737 -8.52899 -8.36655 -8.18565 -6.88357 -6.07413 -3.24657 0.03897 0.41436 1.59087 1.93720 2.86274 3.00694 3.46687 3.50600 3.52840 3.60685 3.65784 3.71894 3.92920 4.40399 4.49548 4.60136 4.66306 4.75251 4.86594 4.98370 5.03294 5.14442 5.25575 5.31805 5.50568 5.51697 5.60788 5.66431 5.70144 5.80422 5.82619 5.89999 5.98610 5.99716 6.15104 6.24979 6.34517 6.44763 6.49292 6.61545 6.68630 6.74954 6.99020 7.08222 7.20961 7.27027 7.95451 7.99225 8.48217 8.56891 9.09937 9.83159 10.28136 11.20975 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.002902 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.476096 B = 9646.614797 C =10639.559253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.023 4.023 3 Si 1.067 2.933 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.348 4.348 8 H 0.057 0.943 9 N -0.596 5.596 10 C 0.148 3.852 11 C -0.136 4.136 12 C -0.083 4.083 13 C -0.100 4.100 14 C 0.114 3.886 15 N -0.640 5.640 16 C 0.615 3.385 17 O -0.540 6.540 18 C -0.277 4.277 19 C 0.127 3.873 20 N -0.309 5.309 21 N -0.309 5.309 22 C 0.166 3.834 23 C -0.225 4.225 24 C 0.181 3.819 25 N -0.441 5.441 26 C 0.314 3.686 27 C 0.120 3.880 28 C 0.163 3.837 29 H 0.270 0.730 30 H 0.080 0.920 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.210 0.790 39 H 0.184 0.816 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.023 0.977 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.369 -14.222 12.922 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.225 4.225 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.477 4.477 8 H 0.075 0.925 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.175 4.175 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.008 4.008 15 N -0.375 5.375 16 C 0.406 3.594 17 O -0.418 6.418 18 C -0.293 4.293 19 C -0.054 4.054 20 N -0.131 5.131 21 N -0.077 5.077 22 C 0.030 3.970 23 C -0.249 4.249 24 C -0.002 4.002 25 N -0.151 5.151 26 C 0.082 3.918 27 C -0.002 4.002 28 C 0.036 3.964 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.226 0.774 39 H 0.201 0.799 40 H 0.188 0.812 41 H 0.201 0.799 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.041 0.959 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.309 -12.832 13.071 23.243 hybrid contribution 0.405 -1.616 0.037 1.667 sum 14.714 -14.448 13.108 24.435 Atomic orbital electron populations 1.70717 1.06666 1.30457 1.47798 1.25799 0.96507 1.01415 0.98828 0.83507 0.74403 0.75734 0.76662 1.21808 1.22206 1.21729 1.19976 0.97422 0.88260 1.42016 0.92549 1.44099 1.46499 1.00911 1.40396 1.20844 0.90361 0.99395 0.87172 1.21992 1.00829 0.95279 0.99381 1.21114 0.96988 0.97538 0.96461 1.22573 0.94453 0.94426 0.98847 1.23366 0.96707 0.79769 1.00964 1.49850 1.41508 1.08035 1.38091 1.16350 0.78514 0.84921 0.79652 1.90814 1.67025 1.14239 1.69721 1.19418 1.09917 0.91426 1.08503 1.24646 0.91617 0.97252 0.91912 1.77672 1.21508 0.93600 1.20311 1.47106 1.26906 1.08082 1.25641 1.22169 0.89608 0.96395 0.88806 1.21936 1.05786 0.91628 1.05567 1.23640 0.87377 1.01800 0.87356 1.68349 1.18856 1.09333 1.18564 1.20369 0.92878 0.85790 0.92753 1.23179 0.88397 0.97630 0.91029 1.20787 0.98085 0.86073 0.91415 0.91882 0.90178 0.96625 0.92923 0.92410 0.92048 0.92992 0.89283 0.90303 0.77389 0.79939 0.81156 0.79927 0.90375 0.89821 0.95943 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 12.39 55.49 0.69 -25.85 16 2 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 3 Si 1.07 24.46 29.99 -169.99 -5.10 19.36 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.35 -9.06 9.50 -15.06 -0.14 -9.20 16 8 H 0.06 1.47 7.94 -52.49 -0.42 1.06 16 9 N -0.60 -13.70 2.86 -172.75 -0.49 -14.19 16 10 C 0.15 3.25 4.62 -4.00 -0.02 3.24 16 11 C -0.14 -2.40 5.99 -26.80 -0.16 -2.56 16 12 C -0.08 -1.34 5.02 -26.83 -0.13 -1.47 16 13 C -0.10 -1.60 0.87 -154.43 -0.13 -1.73 16 14 C 0.11 1.70 6.11 -3.17 -0.02 1.68 16 15 N -0.64 -10.09 3.45 -182.07 -0.63 -10.72 16 16 C 0.62 10.89 8.02 -12.90 -0.10 10.79 16 17 O -0.54 -11.24 17.46 5.18 0.09 -11.15 16 18 C -0.28 -4.38 6.17 -104.66 -0.65 -5.02 16 19 C 0.13 1.74 11.02 -17.13 -0.19 1.55 16 20 N -0.31 -4.17 12.58 30.77 0.39 -3.79 16 21 N -0.31 -3.73 3.86 -11.97 -0.05 -3.78 16 22 C 0.17 1.17 11.29 -16.45 -0.19 0.98 16 23 C -0.23 -1.07 10.05 -39.83 -0.40 -1.47 16 24 C 0.18 1.35 11.28 -17.05 -0.19 1.15 16 25 N -0.44 -5.89 10.26 -12.00 -0.12 -6.01 16 26 C 0.31 4.58 7.74 -155.83 -1.21 3.38 16 27 C 0.12 1.78 7.97 -3.18 -0.03 1.76 16 28 C 0.16 3.10 5.71 -3.81 -0.02 3.08 16 29 H 0.27 7.88 6.77 -40.82 -0.28 7.60 16 30 H 0.08 2.01 6.23 -51.93 -0.32 1.68 16 31 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.03 7.37 -51.93 -0.38 0.65 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.82 8.02 -51.93 -0.42 0.40 16 36 H 0.09 1.30 7.97 -51.93 -0.41 0.88 16 37 H 0.08 1.13 5.47 -51.93 -0.28 0.84 16 38 H 0.21 2.51 5.09 -52.48 -0.27 2.24 16 39 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.17 0.05 8.06 -52.49 -0.42 -0.37 16 41 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 43 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.12 7.78 -51.93 -0.40 0.72 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -36.14 365.58 -9.15 -45.28 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.77 Total: -0.09 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -3.66 Total: 5.43 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.22 Total: -64.34 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.10 Total: 19.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.14 -9.15 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981930977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.905 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds