Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48500 * 109.47137 * 269.99770 * 3 2 1 5 5 H 1.48501 * 109.47195 * 30.00211 * 3 2 1 6 6 H 1.48506 * 109.46656 * 149.99978 * 3 2 1 7 7 C 1.38818 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99341 * 195.92756 * 7 2 1 9 9 N 1.36932 * 120.00380 * 15.92954 * 7 2 1 10 10 C 1.43460 * 118.94268 * 206.13316 * 9 7 2 11 11 C 1.53801 * 107.96021 * 273.62491 * 10 9 7 12 12 C 1.47138 * 111.84292 * 281.66926 * 11 10 9 13 13 N 1.48215 * 110.34110 * 58.29662 * 12 11 10 14 14 C 1.34781 * 119.97053 * 102.46502 * 13 12 11 15 15 O 1.21509 * 119.99846 * 5.71005 * 14 13 12 16 16 C 1.48163 * 119.99831 * 185.71092 * 14 13 12 17 17 C 1.39236 * 119.68356 * 185.62026 * 16 14 13 18 18 C 1.38709 * 119.18776 * 180.02562 * 17 16 14 19 19 C 1.38419 * 118.55728 * 359.97438 * 18 17 16 20 20 C 1.39256 * 119.29615 * 0.02562 * 19 18 17 21 21 N 1.39817 * 119.61353 * 179.97438 * 20 19 18 22 22 C 1.35849 * 126.10364 * 179.97438 * 21 20 19 23 23 C 1.35272 * 107.61500 * 179.97438 * 22 21 20 24 24 C 1.39951 * 107.96951 * 359.97438 * 23 22 21 25 25 N 1.30817 * 108.36986 * 0.24887 * 24 23 22 26 26 N 1.31977 * 120.76761 * 0.24500 * 20 19 18 27 27 C 1.43622 * 120.05855 * 282.74351 * 13 12 11 28 28 C 1.48856 * 118.93883 * 26.10610 * 9 7 2 29 29 H 0.96994 * 120.00094 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.76776 * 154.01348 * 10 9 7 31 31 H 1.09000 * 109.80646 * 33.26724 * 10 9 7 32 32 H 1.09000 * 109.00668 * 161.06254 * 11 10 9 33 33 H 1.09002 * 108.94144 * 42.24227 * 11 10 9 34 34 H 1.09000 * 109.32496 * 298.03412 * 12 11 10 35 35 H 1.08994 * 109.18533 * 178.47265 * 12 11 10 36 36 H 1.07996 * 120.40638 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.72379 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.34889 * 179.97438 * 19 18 17 39 39 H 1.07999 * 126.19149 * 0.03463 * 22 21 20 40 40 H 1.08002 * 126.01703 * 180.02562 * 23 22 21 41 41 H 1.08003 * 125.81418 * 179.97438 * 24 23 22 42 42 H 1.08998 * 108.87041 * 211.19876 * 27 13 12 43 43 H 1.09001 * 108.86984 * 329.63040 * 27 13 12 44 44 H 1.09004 * 109.48187 * 260.60447 * 28 9 7 45 45 H 1.09005 * 109.48135 * 20.64108 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0591 -1.2200 0.2572 9 7 1.3650 -2.3655 -0.3244 10 6 1.8638 -3.6052 0.1976 11 6 2.9542 -4.1178 -0.7584 12 6 2.3791 -4.7457 -1.9584 13 7 1.5139 -3.7823 -2.6796 14 6 1.9674 -3.1725 -3.7927 15 8 3.0422 -3.4881 -4.2633 16 6 1.1552 -2.1172 -4.4424 17 6 1.5725 -1.5743 -5.6547 18 6 0.8046 -0.5866 -6.2536 19 6 -0.3554 -0.1752 -5.6203 20 6 -0.7147 -0.7605 -4.4089 21 7 -1.8848 -0.3496 -3.7632 22 6 -2.3585 -0.8287 -2.5835 23 6 -3.5085 -0.1721 -2.3073 24 6 -3.7475 0.7355 -3.3454 25 7 -2.7799 0.6268 -4.2190 26 7 0.0393 -1.6947 -3.8605 27 6 0.1950 -3.4936 -2.1899 28 6 0.1683 -2.3029 -1.2074 29 1 -0.4850 0.8400 0.0004 30 1 1.0542 -4.3325 0.2570 31 1 2.2883 -3.4445 1.1886 32 1 3.5696 -4.8496 -0.2352 33 1 3.5811 -3.2794 -1.0621 34 1 1.7867 -5.6119 -1.6636 35 1 3.1865 -5.0677 -2.6160 36 1 2.4834 -1.9174 -6.1226 37 1 1.1052 -0.1480 -7.1936 38 1 -0.9749 0.5921 -6.0607 39 1 -1.8995 -1.5944 -1.9757 40 1 -4.1320 -0.3215 -1.4382 41 1 -4.5899 1.4078 -3.4157 42 1 -0.4521 -3.2615 -3.0358 43 1 -0.1940 -4.3766 -1.6828 44 1 -0.7351 -2.3516 -0.5993 45 1 0.1790 -1.3685 -1.7686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981939804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 154.600305 kcal Electronic energy + Delta-G solvation = -31756.048628 eV Core-core repulsion = 27778.133007 eV Total energy + Delta-G solvation = -3977.915621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39030 -40.37255 -38.92429 -37.03475 -34.31602 -33.45446 -33.30765 -31.89314 -30.82934 -30.05947 -29.31465 -27.64592 -25.78429 -24.35320 -23.96731 -23.61062 -22.26148 -20.85545 -20.54164 -19.71324 -19.06262 -17.85226 -17.32207 -16.46370 -16.13621 -15.91621 -15.58571 -15.23869 -15.00980 -14.49891 -14.42153 -14.12520 -13.88691 -13.74093 -13.27689 -13.09348 -12.99749 -12.88476 -12.55770 -12.36942 -12.21399 -12.07333 -11.67287 -11.38061 -11.00754 -10.79078 -10.64751 -10.54994 -10.38221 -10.25399 -10.19140 -10.02304 -9.95521 -9.65789 -9.51898 -9.03658 -8.86279 -8.43658 -8.13991 -7.98815 -6.65571 -5.77784 -3.18220 0.66204 1.01280 2.22197 2.33941 3.02594 3.10943 3.36209 3.38671 3.44029 3.45225 4.01825 4.25526 4.51142 4.56188 4.84547 4.99116 5.09018 5.18918 5.32790 5.35559 5.46601 5.52617 5.55155 5.69960 5.72684 5.80617 5.92702 5.93220 6.09159 6.10511 6.18620 6.25020 6.27907 6.38214 6.45141 6.52108 6.56441 6.77960 6.82739 6.90225 7.05392 7.31368 7.40420 7.46487 7.62147 7.83105 7.90941 8.01410 8.47215 8.51183 9.24096 9.91873 10.37269 11.29660 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.006635 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.901826 B = 4218.959528 C = 5525.447492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.010 3.990 3 Si 0.890 3.110 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.061 0.939 9 N -0.590 5.590 10 C 0.161 3.839 11 C -0.171 4.171 12 C 0.127 3.873 13 N -0.560 5.560 14 C 0.574 3.426 15 O -0.548 6.548 16 C 0.121 3.879 17 C -0.132 4.132 18 C -0.062 4.062 19 C -0.151 4.151 20 C 0.371 3.629 21 N -0.326 5.326 22 C 0.106 3.894 23 C -0.272 4.272 24 C 0.064 3.936 25 N -0.299 5.299 26 N -0.453 5.453 27 C 0.075 3.925 28 C 0.164 3.836 29 H 0.251 0.749 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.192 0.808 40 H 0.153 0.847 41 H 0.188 0.812 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.033 0.967 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 -4.861 -9.073 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.721 3.279 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.311 5.311 10 C 0.033 3.967 11 C -0.212 4.212 12 C 0.006 3.994 13 N -0.289 5.289 14 C 0.360 3.640 15 O -0.426 6.426 16 C -0.018 4.018 17 C -0.154 4.154 18 C -0.088 4.088 19 C -0.173 4.173 20 C 0.141 3.859 21 N -0.104 5.104 22 C -0.035 4.035 23 C -0.300 4.300 24 C -0.124 4.124 25 N -0.118 5.118 26 N -0.169 5.169 27 C -0.050 4.050 28 C 0.039 3.961 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.209 0.791 40 H 0.171 0.829 41 H 0.205 0.795 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.683 -4.920 -9.589 11.751 hybrid contribution 0.330 1.304 0.370 1.395 sum -4.353 -3.616 -9.219 10.817 Atomic orbital electron populations 1.69974 1.04804 1.25142 1.54263 1.24883 0.95261 0.97784 1.00908 0.86469 0.79396 0.84485 0.77543 1.21905 1.21748 1.20485 1.19110 0.92361 0.85115 1.41735 0.92097 1.43689 1.32108 1.01839 1.53476 1.20287 0.93521 0.88522 0.94389 1.21890 1.01161 1.00722 0.97441 1.20655 0.94274 0.90372 0.94089 1.47257 1.16424 1.41241 1.23948 1.17709 0.84819 0.80627 0.80805 1.90715 1.22017 1.64709 1.65205 1.20920 0.91307 0.96759 0.92832 1.22049 1.01214 0.96787 0.95310 1.21453 0.92740 0.94914 0.99722 1.21765 0.98717 1.01885 0.94973 1.17770 0.85763 0.92702 0.89625 1.45664 1.17030 1.30345 1.17330 1.23357 0.93934 0.99248 0.86920 1.21582 1.01228 1.03635 1.03521 1.24040 0.97355 0.98554 0.92483 1.77314 1.02257 1.08348 1.23881 1.67510 1.05599 1.11765 1.32068 1.22483 0.82701 0.99673 1.00155 1.21996 0.88563 0.96366 0.89223 0.93862 0.94888 0.93619 0.92440 0.91394 0.91745 0.90229 0.83114 0.83456 0.83366 0.79143 0.82908 0.79538 0.88952 0.93185 0.94893 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 11.06 55.49 0.61 -23.87 16 2 C 0.01 0.28 4.90 -17.43 -0.09 0.20 16 3 Si 0.89 22.31 29.58 -169.99 -5.03 17.28 16 4 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.82 9.25 -15.06 -0.14 -6.96 16 8 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 9 N -0.59 -14.00 2.53 -172.29 -0.44 -14.43 16 10 C 0.16 3.23 5.63 -5.23 -0.03 3.21 16 11 C -0.17 -3.05 5.64 -29.13 -0.16 -3.22 16 12 C 0.13 2.11 5.73 -5.91 -0.03 2.08 16 13 N -0.56 -10.38 2.47 -177.97 -0.44 -10.82 16 14 C 0.57 11.19 7.64 -12.18 -0.09 11.10 16 15 O -0.55 -11.39 15.75 5.36 0.08 -11.31 16 16 C 0.12 2.18 6.55 -83.02 -0.54 1.64 16 17 C -0.13 -1.97 9.63 -39.04 -0.38 -2.34 16 18 C -0.06 -0.79 10.16 -39.34 -0.40 -1.19 16 19 C -0.15 -2.21 9.70 -39.14 -0.38 -2.59 16 20 C 0.37 6.51 7.55 -154.53 -1.17 5.35 16 21 N -0.33 -5.78 3.81 -12.10 -0.05 -5.83 16 22 C 0.11 1.86 10.66 -16.83 -0.18 1.69 16 23 C -0.27 -4.10 10.80 -40.00 -0.43 -4.53 16 24 C 0.06 0.90 12.02 -17.34 -0.21 0.69 16 25 N -0.30 -4.90 11.83 30.64 0.36 -4.53 16 26 N -0.45 -8.35 3.62 -8.85 -0.03 -8.38 16 27 C 0.08 1.36 4.70 -4.84 -0.02 1.34 16 28 C 0.16 3.59 3.12 -2.01 -0.01 3.58 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.03 0.61 7.58 -51.93 -0.39 0.21 16 31 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.44 7.91 -51.93 -0.41 1.03 16 34 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 35 H 0.08 1.32 7.08 -51.93 -0.37 0.95 16 36 H 0.15 2.04 7.64 -52.49 -0.40 1.63 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.15 1.96 7.68 -52.49 -0.40 1.56 16 39 H 0.19 3.52 4.87 -52.49 -0.26 3.26 16 40 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.09 1.63 5.34 -51.93 -0.28 1.35 16 43 H 0.05 0.82 7.73 -51.93 -0.40 0.42 16 44 H 0.03 0.77 7.19 -51.93 -0.37 0.40 16 45 H 0.10 2.32 4.02 -51.93 -0.21 2.11 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -31.71 357.30 -9.36 -41.08 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.57 Total: 5.39 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -4.26 Total: 10.04 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: 0.02 Total: -67.86 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.71 -9.36 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981939804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.676 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds