Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48500 * 109.47137 * 269.99770 * 3 2 1 5 5 H 1.48501 * 109.47195 * 30.00211 * 3 2 1 6 6 H 1.48506 * 109.46656 * 149.99978 * 3 2 1 7 7 C 1.38818 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99341 * 195.92756 * 7 2 1 9 9 N 1.36932 * 120.00380 * 15.92954 * 7 2 1 10 10 C 1.43460 * 118.94268 * 206.13316 * 9 7 2 11 11 C 1.53801 * 107.96021 * 273.62491 * 10 9 7 12 12 C 1.47138 * 111.84292 * 281.66926 * 11 10 9 13 13 N 1.48215 * 110.34110 * 58.29662 * 12 11 10 14 14 C 1.34781 * 119.97053 * 102.46502 * 13 12 11 15 15 O 1.21509 * 119.99846 * 5.71005 * 14 13 12 16 16 C 1.48163 * 119.99831 * 185.71092 * 14 13 12 17 17 C 1.39236 * 119.68356 * 185.62026 * 16 14 13 18 18 C 1.38709 * 119.18776 * 180.02562 * 17 16 14 19 19 C 1.38419 * 118.55728 * 359.97438 * 18 17 16 20 20 C 1.39256 * 119.29615 * 0.02562 * 19 18 17 21 21 N 1.39817 * 119.61353 * 179.97438 * 20 19 18 22 22 C 1.35849 * 126.10364 * 179.97438 * 21 20 19 23 23 C 1.35272 * 107.61500 * 179.97438 * 22 21 20 24 24 C 1.39951 * 107.96951 * 359.97438 * 23 22 21 25 25 N 1.30817 * 108.36986 * 0.24887 * 24 23 22 26 26 N 1.31977 * 120.76761 * 0.24500 * 20 19 18 27 27 C 1.43622 * 120.05855 * 282.74351 * 13 12 11 28 28 C 1.48856 * 118.93883 * 26.10610 * 9 7 2 29 29 H 0.96994 * 120.00094 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.76776 * 154.01348 * 10 9 7 31 31 H 1.09000 * 109.80646 * 33.26724 * 10 9 7 32 32 H 1.09000 * 109.00668 * 161.06254 * 11 10 9 33 33 H 1.09002 * 108.94144 * 42.24227 * 11 10 9 34 34 H 1.09000 * 109.32496 * 298.03412 * 12 11 10 35 35 H 1.08994 * 109.18533 * 178.47265 * 12 11 10 36 36 H 1.07996 * 120.40638 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.72379 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.34889 * 179.97438 * 19 18 17 39 39 H 1.07999 * 126.19149 * 0.03463 * 22 21 20 40 40 H 1.08002 * 126.01703 * 180.02562 * 23 22 21 41 41 H 1.08003 * 125.81418 * 179.97438 * 24 23 22 42 42 H 1.08998 * 108.87041 * 211.19876 * 27 13 12 43 43 H 1.09001 * 108.86984 * 329.63040 * 27 13 12 44 44 H 1.09004 * 109.48187 * 260.60447 * 28 9 7 45 45 H 1.09005 * 109.48135 * 20.64108 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0591 -1.2200 0.2572 9 7 1.3650 -2.3655 -0.3244 10 6 1.8638 -3.6052 0.1976 11 6 2.9542 -4.1178 -0.7584 12 6 2.3791 -4.7457 -1.9584 13 7 1.5139 -3.7823 -2.6796 14 6 1.9674 -3.1725 -3.7927 15 8 3.0422 -3.4881 -4.2633 16 6 1.1552 -2.1172 -4.4424 17 6 1.5725 -1.5743 -5.6547 18 6 0.8046 -0.5866 -6.2536 19 6 -0.3554 -0.1752 -5.6203 20 6 -0.7147 -0.7605 -4.4089 21 7 -1.8848 -0.3496 -3.7632 22 6 -2.3585 -0.8287 -2.5835 23 6 -3.5085 -0.1721 -2.3073 24 6 -3.7475 0.7355 -3.3454 25 7 -2.7799 0.6268 -4.2190 26 7 0.0393 -1.6947 -3.8605 27 6 0.1950 -3.4936 -2.1899 28 6 0.1683 -2.3029 -1.2074 29 1 -0.4850 0.8400 0.0004 30 1 1.0542 -4.3325 0.2570 31 1 2.2883 -3.4445 1.1886 32 1 3.5696 -4.8496 -0.2352 33 1 3.5811 -3.2794 -1.0621 34 1 1.7867 -5.6119 -1.6636 35 1 3.1865 -5.0677 -2.6160 36 1 2.4834 -1.9174 -6.1226 37 1 1.1052 -0.1480 -7.1936 38 1 -0.9749 0.5921 -6.0607 39 1 -1.8995 -1.5944 -1.9757 40 1 -4.1320 -0.3215 -1.4382 41 1 -4.5899 1.4078 -3.4157 42 1 -0.4521 -3.2615 -3.0358 43 1 -0.1940 -4.3766 -1.6828 44 1 -0.7351 -2.3516 -0.5993 45 1 0.1790 -1.3685 -1.7686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981939804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = 137.751521 kcal Electronic energy + Delta-G solvation = -31756.779246 eV Core-core repulsion = 27778.133007 eV Total energy + Delta-G solvation = -3978.646239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60950 -41.68069 -40.26542 -38.63780 -36.00960 -34.75269 -34.63489 -33.33963 -32.61541 -31.27569 -30.54642 -29.28403 -27.39405 -25.73655 -25.45668 -25.09490 -23.63380 -22.12381 -21.76658 -21.39115 -20.41586 -19.16585 -18.87699 -18.12157 -17.53545 -17.21954 -16.94322 -16.61562 -16.51780 -16.09536 -15.75026 -15.66861 -15.45453 -15.15974 -14.61486 -14.49388 -14.39945 -14.21961 -14.03054 -13.83501 -13.60112 -13.27507 -13.15364 -13.11528 -12.92937 -12.56637 -12.38541 -12.09714 -11.85057 -11.75517 -11.68260 -11.51158 -11.46491 -11.36463 -10.92378 -10.44377 -10.32230 -10.10970 -9.58193 -9.26265 -8.58734 -7.82897 -5.23845 -0.56419 -0.16057 1.02010 1.15497 1.32367 1.37175 1.42226 1.67331 1.92688 2.04000 2.46970 2.74046 2.97674 3.29547 3.43250 3.61578 3.81923 3.89760 3.93490 4.07520 4.15415 4.23587 4.24573 4.33773 4.37149 4.53858 4.59816 4.66201 4.76058 4.80327 4.89904 4.92581 4.95454 5.04032 5.08020 5.15386 5.24105 5.31425 5.39925 5.48310 5.63848 5.67877 5.77657 5.92569 6.07523 6.24615 6.44169 6.44868 6.78695 7.06222 7.22376 8.00931 8.38696 9.19155 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.006635 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.901826 B = 4218.959528 C = 5525.447492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.028 4.028 3 Si 0.932 3.068 4 H -0.303 1.303 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.258 4.258 8 H 0.047 0.953 9 N -0.604 5.604 10 C 0.156 3.844 11 C -0.155 4.155 12 C 0.123 3.877 13 N -0.564 5.564 14 C 0.566 3.434 15 O -0.570 6.570 16 C 0.088 3.912 17 C -0.129 4.129 18 C -0.042 4.042 19 C -0.148 4.148 20 C 0.344 3.656 21 N -0.338 5.338 22 C 0.077 3.923 23 C -0.269 4.269 24 C 0.073 3.927 25 N -0.315 5.315 26 N -0.472 5.472 27 C 0.088 3.912 28 C 0.175 3.825 29 H 0.244 0.756 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.197 0.803 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.013 0.987 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 -4.969 -10.367 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.226 4.226 3 Si 0.763 3.237 4 H -0.231 1.231 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.389 4.389 8 H 0.064 0.936 9 N -0.326 5.326 10 C 0.029 3.971 11 C -0.196 4.196 12 C 0.003 3.997 13 N -0.292 5.292 14 C 0.353 3.647 15 O -0.450 6.450 16 C -0.050 4.050 17 C -0.151 4.151 18 C -0.067 4.067 19 C -0.171 4.171 20 C 0.114 3.886 21 N -0.116 5.116 22 C -0.064 4.064 23 C -0.296 4.296 24 C -0.115 4.115 25 N -0.134 5.134 26 N -0.188 5.188 27 C -0.037 4.037 28 C 0.050 3.950 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.182 0.818 37 H 0.214 0.786 38 H 0.181 0.819 39 H 0.191 0.809 40 H 0.190 0.810 41 H 0.248 0.752 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.031 0.969 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.289 -5.065 -10.866 13.103 hybrid contribution 0.504 1.344 0.781 1.634 sum -4.785 -3.721 -10.085 11.766 Atomic orbital electron populations 1.70081 1.05087 1.24747 1.54948 1.25315 0.95966 0.99464 1.01809 0.85798 0.78828 0.82409 0.76620 1.23137 1.21725 1.20030 1.19187 0.91955 0.86671 1.41135 0.93552 1.43919 1.32383 1.02094 1.54225 1.20454 0.94657 0.87691 0.94331 1.21687 1.00085 1.00074 0.97726 1.20825 0.94774 0.90871 0.93245 1.47404 1.16616 1.41349 1.23870 1.18073 0.84779 0.80801 0.81038 1.90678 1.22835 1.65559 1.65935 1.20962 0.91963 0.97703 0.94381 1.22314 1.01721 0.96780 0.94240 1.21952 0.90948 0.93173 1.00635 1.22068 0.99403 1.01643 0.93955 1.18169 0.86123 0.93434 0.90862 1.45817 1.17442 1.30864 1.17457 1.23335 0.95238 1.00192 0.87638 1.21915 1.00457 1.03035 1.04236 1.24756 0.97588 0.98129 0.91055 1.77268 1.02792 1.08467 1.24870 1.67325 1.06040 1.12677 1.32799 1.22249 0.82995 0.98859 0.99615 1.21781 0.86941 0.97262 0.89022 0.94608 0.92710 0.94570 0.89089 0.95399 0.88287 0.90078 0.81817 0.78594 0.81875 0.80850 0.81017 0.75212 0.88408 0.91006 0.96911 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.40 11.06 21.65 0.24 -50.16 16 2 C -0.03 -1.57 4.90 84.86 0.42 -1.15 16 3 Si 0.93 46.62 29.58 68.60 2.03 48.65 16 4 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.26 -14.25 9.25 84.04 0.78 -13.47 16 8 H 0.05 2.64 7.88 -2.91 -0.02 2.62 16 9 N -0.60 -29.08 2.53 -699.01 -1.77 -30.85 16 10 C 0.16 6.17 5.63 87.21 0.49 6.66 16 11 C -0.15 -5.39 5.64 29.04 0.16 -5.22 16 12 C 0.12 3.90 5.73 84.23 0.48 4.38 16 13 N -0.56 -20.69 2.47 -835.26 -2.06 -22.75 16 14 C 0.57 22.15 7.64 86.88 0.66 22.82 16 15 O -0.57 -23.73 15.75 -3.74 -0.06 -23.79 16 16 C 0.09 3.19 6.55 41.88 0.27 3.46 16 17 C -0.13 -3.67 9.63 22.62 0.22 -3.46 16 18 C -0.04 -0.94 10.16 22.43 0.23 -0.71 16 19 C -0.15 -4.12 9.70 22.56 0.22 -3.90 16 20 C 0.34 12.09 7.55 132.94 1.00 13.09 16 21 N -0.34 -12.02 3.81 -192.19 -0.73 -12.75 16 22 C 0.08 2.74 10.66 83.39 0.89 3.63 16 23 C -0.27 -7.92 10.80 22.00 0.24 -7.68 16 24 C 0.07 1.90 12.02 85.26 1.02 2.93 16 25 N -0.32 -9.97 11.83 -56.98 -0.67 -10.65 16 26 N -0.47 -17.65 3.62 -181.91 -0.66 -18.31 16 27 C 0.09 3.19 4.70 87.39 0.41 3.60 16 28 C 0.17 7.82 3.12 86.40 0.27 8.09 16 29 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 30 H 0.05 1.92 7.58 -2.39 -0.02 1.91 16 31 H 0.04 1.48 8.02 -2.39 -0.02 1.46 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.03 1.18 7.91 -2.39 -0.02 1.16 16 34 H 0.10 2.47 8.06 -2.39 -0.02 2.45 16 35 H 0.08 2.58 7.08 -2.39 -0.02 2.56 16 36 H 0.16 4.16 7.64 -2.91 -0.02 4.14 16 37 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.16 3.98 7.68 -2.91 -0.02 3.95 16 39 H 0.17 6.73 4.87 -2.91 -0.01 6.72 16 40 H 0.17 4.22 8.06 -2.91 -0.02 4.19 16 41 H 0.23 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.10 3.51 5.34 -2.39 -0.01 3.50 16 43 H 0.07 2.26 7.73 -2.39 -0.02 2.24 16 44 H 0.01 0.63 7.19 -2.39 -0.02 0.61 16 45 H 0.08 3.78 4.02 -2.38 -0.01 3.77 16 Total: -1.00 -71.25 357.30 5.11 -66.14 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.03 Total: 21.39 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: 7.77 Total: 33.07 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -5.65 Total: -145.47 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.06 Total: -23.79 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.25 5.11 -66.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981939804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.892 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds