Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86810 * 119.99611 * 2 1 4 4 H 1.48507 * 109.46708 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47135 * 299.99685 * 3 2 1 6 6 H 1.48502 * 109.46901 * 60.00110 * 3 2 1 7 7 C 1.38807 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99771 * 198.00070 * 7 2 1 9 9 N 1.36930 * 120.00043 * 18.00212 * 7 2 1 10 10 C 1.43467 * 118.94079 * 203.77295 * 9 7 2 11 11 C 1.53798 * 107.96202 * 273.63684 * 10 9 7 12 12 C 1.47723 * 111.83210 * 281.59745 * 11 10 9 13 13 N 1.48213 * 110.06740 * 58.36831 * 12 11 10 14 14 C 1.34774 * 119.96820 * 102.59374 * 13 12 11 15 15 O 1.21604 * 120.00231 * 4.70633 * 14 13 12 16 16 C 1.47423 * 119.99473 * 184.70673 * 14 13 12 17 17 C 1.41372 * 126.41341 * 7.05965 * 16 14 13 18 18 N 1.30439 * 108.08376 * 179.69512 * 17 16 14 19 19 N 1.39937 * 108.91309 * 0.44088 * 18 17 16 20 20 C 1.39817 * 125.77824 * 179.80830 * 19 18 17 21 21 C 1.38946 * 119.68239 * 359.67236 * 20 19 18 22 22 C 1.38421 * 119.10216 * 179.97438 * 21 20 19 23 23 C 1.38790 * 118.48402 * 0.02562 * 22 21 20 24 24 C 1.38129 * 119.29551 * 0.02562 * 23 22 21 25 25 N 1.31889 * 120.84169 * 359.97438 * 24 23 22 26 26 C 1.34627 * 108.44922 * 359.55277 * 19 18 17 27 27 C 1.43629 * 120.05955 * 282.31688 * 13 12 11 28 28 C 1.48859 * 118.94151 * 23.75575 * 9 7 2 29 29 H 0.96998 * 120.00069 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.76192 * 33.25171 * 10 9 7 31 31 H 1.08999 * 109.76604 * 153.96222 * 10 9 7 32 32 H 1.08993 * 109.01054 * 42.26994 * 11 10 9 33 33 H 1.08994 * 109.00508 * 161.05754 * 11 10 9 34 34 H 1.09004 * 109.39609 * 298.22318 * 12 11 10 35 35 H 1.09002 * 109.52925 * 178.59216 * 12 11 10 36 36 H 1.07998 * 125.95403 * 359.95848 * 17 16 14 37 37 H 1.07998 * 120.45400 * 0.02608 * 21 20 19 38 38 H 1.08003 * 120.75904 * 180.02562 * 22 21 20 39 39 H 1.08008 * 120.35197 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.57835 * 179.97438 * 24 23 22 41 41 H 1.07992 * 126.31821 * 180.28327 * 26 19 18 42 42 H 1.08994 * 108.87233 * 211.70471 * 27 13 12 43 43 H 1.09003 * 108.87040 * 330.23567 * 27 13 12 44 44 H 1.09000 * 109.47779 * 20.63867 * 28 9 7 45 45 H 1.08997 * 109.48862 * 260.60820 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0506 -1.2248 0.2896 9 7 1.3759 -2.3591 -0.3654 10 6 1.8895 -3.6121 0.1082 11 6 2.9817 -4.0771 -0.8697 12 6 2.4064 -4.6696 -2.0945 13 7 1.5303 -3.6851 -2.7726 14 6 1.9725 -3.0300 -3.8643 15 8 3.0553 -3.3078 -4.3431 16 6 1.1435 -1.9766 -4.4779 17 6 -0.0619 -1.4494 -3.9605 18 7 -0.4903 -0.5340 -4.7850 19 7 0.4009 -0.4387 -5.8598 20 6 0.2781 0.4294 -6.9489 21 6 -0.8098 1.2906 -7.0232 22 6 -0.9191 2.1453 -8.1066 23 6 0.0679 2.1076 -9.0816 24 6 1.1213 1.2248 -8.9433 25 7 1.1984 0.4223 -7.8995 26 6 1.3994 -1.3203 -5.6647 27 6 0.2083 -3.4329 -2.2710 28 6 0.1753 -2.2763 -1.2416 29 1 -0.4850 0.8400 -0.0004 30 1 2.3161 -3.4833 1.1030 31 1 1.0875 -4.3494 0.1440 32 1 3.5998 -3.2224 -1.1442 33 1 3.6066 -4.8213 -0.3762 34 1 1.8218 -5.5509 -1.8302 35 1 3.2103 -4.9625 -2.7699 36 1 -0.5418 -1.7491 -3.0406 37 1 -1.5595 1.2937 -6.2459 38 1 -1.7533 2.8259 -8.1911 39 1 0.0125 2.7610 -9.9399 40 1 1.8916 1.1914 -9.6995 41 1 2.2448 -1.4836 -6.3165 42 1 -0.4437 -3.1798 -3.1069 43 1 -0.1664 -4.3385 -1.7939 44 1 0.1744 -1.3215 -1.7676 45 1 -0.7253 -2.3569 -0.6330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982064711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 157.718095 kcal Electronic energy + Delta-G solvation = -30374.424758 eV Core-core repulsion = 26396.644335 eV Total energy + Delta-G solvation = -3977.780424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.71390 -40.23809 -39.18002 -36.90360 -34.34106 -33.97101 -32.91958 -32.48547 -30.95476 -30.38844 -29.42927 -27.79520 -25.66587 -24.54207 -24.03679 -23.65727 -22.49685 -21.30544 -20.74311 -19.74868 -19.04539 -18.06506 -16.96605 -16.65051 -16.24800 -15.96650 -15.73550 -15.56536 -15.34702 -14.80030 -14.56031 -14.26577 -13.81881 -13.76082 -13.51876 -13.33413 -13.13098 -12.87453 -12.64314 -12.32521 -12.29002 -12.20954 -11.51363 -11.24596 -11.01270 -10.97697 -10.73000 -10.56559 -10.47949 -10.25792 -10.17671 -10.10208 -9.93060 -9.82672 -9.70492 -9.34002 -9.08999 -8.46645 -8.32783 -7.95607 -6.72669 -5.81167 -3.19053 0.47084 0.91430 1.92473 2.07995 2.42993 3.37588 3.46610 3.48970 3.51371 3.55666 3.88627 4.10098 4.37491 4.51319 4.60204 4.72985 4.82866 5.03073 5.08615 5.20202 5.25946 5.37825 5.45706 5.48917 5.56490 5.67648 5.76308 5.77751 5.83468 5.88394 5.94955 6.06319 6.10198 6.21252 6.32223 6.46401 6.51118 6.57978 6.83677 6.92103 7.00042 7.05396 7.30226 7.33053 7.37893 7.79804 7.81884 8.02078 8.42126 8.74717 9.19520 9.87848 10.31990 11.27471 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.004098 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.473523 B = 6831.241508 C = 8222.919550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.007 3.993 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.162 3.838 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.578 5.578 14 C 0.601 3.399 15 O -0.562 6.562 16 C -0.270 4.270 17 C 0.085 3.915 18 N -0.290 5.290 19 N -0.324 5.324 20 C 0.374 3.626 21 C -0.162 4.162 22 C -0.052 4.052 23 C -0.191 4.191 24 C 0.133 3.867 25 N -0.508 5.508 26 C 0.144 3.856 27 C 0.058 3.942 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.235 0.765 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.192 0.808 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 -1.687 -14.995 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.307 5.307 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.010 3.990 13 N -0.308 5.308 14 C 0.390 3.610 15 O -0.442 6.442 16 C -0.284 4.284 17 C -0.103 4.103 18 N -0.107 5.107 19 N -0.098 5.098 20 C 0.147 3.853 21 C -0.184 4.184 22 C -0.079 4.079 23 C -0.212 4.212 24 C -0.025 4.025 25 N -0.221 5.221 26 C -0.002 4.002 27 C -0.068 4.068 28 C 0.019 3.981 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.250 0.750 37 H 0.169 0.831 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.209 0.791 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.496 -1.402 -15.432 15.885 hybrid contribution 0.451 1.115 0.232 1.225 sum -3.045 -0.288 -15.200 15.504 Atomic orbital electron populations 1.70008 1.04999 1.25363 1.54722 1.24847 0.95220 0.98012 1.01069 0.86370 0.79671 0.84519 0.77206 1.20328 1.21740 1.21709 1.19200 0.93294 0.85311 1.40158 0.91645 1.43548 1.31551 1.01561 1.54080 1.20299 0.93556 0.88080 0.94664 1.21996 1.00988 1.00891 0.97268 1.20682 0.94080 0.89817 0.94435 1.47057 1.15694 1.41018 1.27068 1.17040 0.84578 0.79749 0.79615 1.90697 1.22354 1.67115 1.64060 1.20419 1.01182 1.07494 0.99325 1.26071 0.94088 0.91308 0.98868 1.77358 1.14661 1.22208 0.96435 1.45531 1.19199 1.28496 1.16570 1.17759 0.91830 0.89689 0.85993 1.21701 0.99013 0.96786 1.00882 1.21542 0.98239 0.96124 0.91962 1.22151 0.96196 1.01695 1.01137 1.22529 0.96880 0.89943 0.93189 1.66894 1.27446 1.25198 1.02580 1.23053 0.92378 0.88220 0.96521 1.22712 0.83556 1.01573 0.98932 1.22270 0.90107 0.95570 0.90186 0.93688 0.93504 0.94712 0.91281 0.92598 0.91988 0.90239 0.75016 0.83051 0.83821 0.84099 0.81658 0.79125 0.90363 0.91446 0.89288 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.07 11.04 55.49 0.61 -24.46 16 2 C 0.01 0.18 4.86 -17.43 -0.08 0.09 16 3 Si 0.89 22.27 29.59 -169.99 -5.03 17.24 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.25 -6.71 9.27 -15.06 -0.14 -6.85 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -13.74 2.54 -172.00 -0.44 -14.18 16 10 C 0.16 3.20 5.63 -5.23 -0.03 3.17 16 11 C -0.17 -3.05 5.66 -28.87 -0.16 -3.21 16 12 C 0.13 2.19 5.77 -5.65 -0.03 2.16 16 13 N -0.58 -10.65 2.45 -177.61 -0.43 -11.08 16 14 C 0.60 12.18 7.66 -12.52 -0.10 12.08 16 15 O -0.56 -12.54 16.33 5.27 0.09 -12.45 16 16 C -0.27 -5.16 5.93 -105.05 -0.62 -5.78 16 17 C 0.09 1.58 8.66 -16.95 -0.15 1.43 16 18 N -0.29 -5.30 11.74 30.88 0.36 -4.94 16 19 N -0.32 -5.59 3.76 -11.74 -0.04 -5.64 16 20 C 0.37 5.60 7.54 -154.37 -1.16 4.44 16 21 C -0.16 -2.01 9.69 -39.25 -0.38 -2.39 16 22 C -0.05 -0.47 10.17 -39.31 -0.40 -0.87 16 23 C -0.19 -1.50 10.11 -39.42 -0.40 -1.89 16 24 C 0.13 1.27 11.18 -17.57 -0.20 1.07 16 25 N -0.51 -6.90 9.82 -12.29 -0.12 -7.02 16 26 C 0.14 2.55 10.87 -16.41 -0.18 2.38 16 27 C 0.06 0.99 4.69 -4.58 -0.02 0.97 16 28 C 0.14 3.09 4.28 -1.75 -0.01 3.08 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 31 H 0.03 0.62 7.59 -51.93 -0.39 0.22 16 32 H 0.07 1.48 7.91 -51.93 -0.41 1.07 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.08 1.36 7.08 -51.93 -0.37 0.99 16 36 H 0.23 4.20 2.98 -52.49 -0.16 4.05 16 37 H 0.15 1.89 7.67 -52.49 -0.40 1.49 16 38 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 40 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.19 3.10 8.03 -52.49 -0.42 2.68 16 42 H 0.08 1.21 4.68 -51.93 -0.24 0.97 16 43 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 44 H 0.09 2.12 3.94 -51.93 -0.20 1.91 16 45 H 0.05 1.04 8.02 -51.93 -0.42 0.63 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.29 360.76 -9.12 -42.41 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.49 Total: 4.80 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -4.06 Total: 9.88 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -0.06 Total: -67.32 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.29 -9.12 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982064711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.131 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds