Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86810 * 119.99611 * 2 1 4 4 H 1.48507 * 109.46708 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47135 * 299.99685 * 3 2 1 6 6 H 1.48502 * 109.46901 * 60.00110 * 3 2 1 7 7 C 1.38807 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99771 * 198.00070 * 7 2 1 9 9 N 1.36930 * 120.00043 * 18.00212 * 7 2 1 10 10 C 1.43467 * 118.94079 * 203.77295 * 9 7 2 11 11 C 1.53798 * 107.96202 * 273.63684 * 10 9 7 12 12 C 1.47723 * 111.83210 * 281.59745 * 11 10 9 13 13 N 1.48213 * 110.06740 * 58.36831 * 12 11 10 14 14 C 1.34774 * 119.96820 * 102.59374 * 13 12 11 15 15 O 1.21604 * 120.00231 * 4.70633 * 14 13 12 16 16 C 1.47423 * 119.99473 * 184.70673 * 14 13 12 17 17 C 1.41372 * 126.41341 * 7.05965 * 16 14 13 18 18 N 1.30439 * 108.08376 * 179.69512 * 17 16 14 19 19 N 1.39937 * 108.91309 * 0.44088 * 18 17 16 20 20 C 1.39817 * 125.77824 * 179.80830 * 19 18 17 21 21 C 1.38946 * 119.68239 * 359.67236 * 20 19 18 22 22 C 1.38421 * 119.10216 * 179.97438 * 21 20 19 23 23 C 1.38790 * 118.48402 * 0.02562 * 22 21 20 24 24 C 1.38129 * 119.29551 * 0.02562 * 23 22 21 25 25 N 1.31889 * 120.84169 * 359.97438 * 24 23 22 26 26 C 1.34627 * 108.44922 * 359.55277 * 19 18 17 27 27 C 1.43629 * 120.05955 * 282.31688 * 13 12 11 28 28 C 1.48859 * 118.94151 * 23.75575 * 9 7 2 29 29 H 0.96998 * 120.00069 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.76192 * 33.25171 * 10 9 7 31 31 H 1.08999 * 109.76604 * 153.96222 * 10 9 7 32 32 H 1.08993 * 109.01054 * 42.26994 * 11 10 9 33 33 H 1.08994 * 109.00508 * 161.05754 * 11 10 9 34 34 H 1.09004 * 109.39609 * 298.22318 * 12 11 10 35 35 H 1.09002 * 109.52925 * 178.59216 * 12 11 10 36 36 H 1.07998 * 125.95403 * 359.95848 * 17 16 14 37 37 H 1.07998 * 120.45400 * 0.02608 * 21 20 19 38 38 H 1.08003 * 120.75904 * 180.02562 * 22 21 20 39 39 H 1.08008 * 120.35197 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.57835 * 179.97438 * 24 23 22 41 41 H 1.07992 * 126.31821 * 180.28327 * 26 19 18 42 42 H 1.08994 * 108.87233 * 211.70471 * 27 13 12 43 43 H 1.09003 * 108.87040 * 330.23567 * 27 13 12 44 44 H 1.09000 * 109.47779 * 20.63867 * 28 9 7 45 45 H 1.08997 * 109.48862 * 260.60820 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0506 -1.2248 0.2896 9 7 1.3759 -2.3591 -0.3654 10 6 1.8895 -3.6121 0.1082 11 6 2.9817 -4.0771 -0.8697 12 6 2.4064 -4.6696 -2.0945 13 7 1.5303 -3.6851 -2.7726 14 6 1.9725 -3.0300 -3.8643 15 8 3.0553 -3.3078 -4.3431 16 6 1.1435 -1.9766 -4.4779 17 6 -0.0619 -1.4494 -3.9605 18 7 -0.4903 -0.5340 -4.7850 19 7 0.4009 -0.4387 -5.8598 20 6 0.2781 0.4294 -6.9489 21 6 -0.8098 1.2906 -7.0232 22 6 -0.9191 2.1453 -8.1066 23 6 0.0679 2.1076 -9.0816 24 6 1.1213 1.2248 -8.9433 25 7 1.1984 0.4223 -7.8995 26 6 1.3994 -1.3203 -5.6647 27 6 0.2083 -3.4329 -2.2710 28 6 0.1753 -2.2763 -1.2416 29 1 -0.4850 0.8400 -0.0004 30 1 2.3161 -3.4833 1.1030 31 1 1.0875 -4.3494 0.1440 32 1 3.5998 -3.2224 -1.1442 33 1 3.6066 -4.8213 -0.3762 34 1 1.8218 -5.5509 -1.8302 35 1 3.2103 -4.9625 -2.7699 36 1 -0.5418 -1.7491 -3.0406 37 1 -1.5595 1.2937 -6.2459 38 1 -1.7533 2.8259 -8.1911 39 1 0.0125 2.7610 -9.9399 40 1 1.8916 1.1914 -9.6995 41 1 2.2448 -1.4836 -6.3165 42 1 -0.4437 -3.1798 -3.1069 43 1 -0.1664 -4.3385 -1.7939 44 1 0.1744 -1.3215 -1.7676 45 1 -0.7253 -2.3569 -0.6330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982064711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 137.740689 kcal Electronic energy + Delta-G solvation = -30375.291044 eV Core-core repulsion = 26396.644335 eV Total energy + Delta-G solvation = -3978.646709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.00537 -41.29982 -40.52785 -38.55195 -35.97959 -35.29637 -34.11384 -33.56840 -32.78143 -31.70701 -30.56406 -29.45132 -27.26307 -25.86883 -25.38591 -24.89797 -23.79721 -22.58820 -22.07503 -21.40966 -20.40810 -19.39797 -18.59449 -17.63931 -17.53870 -17.45961 -16.94824 -16.80127 -16.68458 -16.43528 -15.98485 -15.59471 -15.32990 -15.25915 -14.67993 -14.64604 -14.42455 -14.22832 -14.07172 -13.95181 -13.73060 -13.14619 -13.08200 -13.04568 -12.78672 -12.48907 -12.38622 -12.20586 -12.12338 -11.85545 -11.65994 -11.46465 -11.38676 -11.04410 -10.90196 -10.79144 -10.47270 -10.38427 -9.59553 -9.35463 -8.64413 -7.86948 -5.24328 -0.54306 0.13107 0.69082 0.90571 1.05157 1.34324 1.39967 1.46519 2.09862 2.38159 2.48253 2.70047 3.11735 3.26639 3.32164 3.63686 3.68655 3.80512 3.89700 3.97113 4.02666 4.13937 4.21467 4.24807 4.32332 4.34465 4.45333 4.52687 4.62649 4.68365 4.71068 4.88525 4.94352 4.97841 5.08416 5.11497 5.19339 5.27795 5.30126 5.42758 5.53822 5.60553 5.69897 5.83057 5.84211 6.14814 6.39761 6.52922 6.76103 7.19047 7.23278 7.97810 8.34176 9.17627 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.004098 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.473523 B = 6831.241508 C = 8222.919550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.033 4.033 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.286 1.286 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.600 5.600 10 C 0.157 3.843 11 C -0.156 4.156 12 C 0.127 3.873 13 N -0.578 5.578 14 C 0.594 3.406 15 O -0.592 6.592 16 C -0.294 4.294 17 C 0.080 3.920 18 N -0.302 5.302 19 N -0.319 5.319 20 C 0.325 3.675 21 C -0.173 4.173 22 C -0.048 4.048 23 C -0.165 4.165 24 C 0.122 3.878 25 N -0.532 5.532 26 C 0.144 3.856 27 C 0.068 3.932 28 C 0.150 3.850 29 H 0.248 0.752 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.234 0.766 37 H 0.141 0.859 38 H 0.180 0.820 39 H 0.187 0.813 40 H 0.200 0.800 41 H 0.199 0.801 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -1.670 -17.053 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.230 4.230 3 Si 0.765 3.235 4 H -0.204 1.204 5 H -0.230 1.230 6 H -0.212 1.212 7 C -0.382 4.382 8 H 0.070 0.930 9 N -0.322 5.322 10 C 0.030 3.970 11 C -0.196 4.196 12 C 0.007 3.993 13 N -0.307 5.307 14 C 0.384 3.616 15 O -0.475 6.475 16 C -0.308 4.308 17 C -0.108 4.108 18 N -0.120 5.120 19 N -0.093 5.093 20 C 0.101 3.899 21 C -0.196 4.196 22 C -0.073 4.073 23 C -0.185 4.185 24 C -0.035 4.035 25 N -0.246 5.246 26 C -0.004 4.004 27 C -0.057 4.057 28 C 0.024 3.976 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.159 0.841 38 H 0.198 0.802 39 H 0.205 0.795 40 H 0.216 0.784 41 H 0.216 0.784 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.078 -1.400 -17.478 18.002 hybrid contribution 0.650 1.224 0.694 1.550 sum -3.428 -0.176 -16.784 17.131 Atomic orbital electron populations 1.70092 1.05438 1.25220 1.55936 1.25263 0.95851 0.99715 1.02132 0.85698 0.78775 0.82418 0.76610 1.20418 1.22966 1.21239 1.19311 0.92905 0.86925 1.39100 0.93024 1.43782 1.31850 1.01832 1.54780 1.20481 0.94724 0.87232 0.94527 1.21808 1.00106 1.00106 0.97625 1.20871 0.94534 0.90521 0.93404 1.47199 1.16246 1.40756 1.26462 1.17293 0.84314 0.79882 0.80080 1.90660 1.23524 1.68153 1.65153 1.20440 1.01767 1.08321 1.00245 1.26004 0.94132 0.91667 0.99009 1.77258 1.15445 1.22272 0.96995 1.45711 1.18389 1.28376 1.16788 1.18081 0.93927 0.91336 0.86566 1.21833 0.98203 0.97394 1.02131 1.22019 0.99480 0.95267 0.90571 1.22690 0.94090 1.00265 1.01406 1.23286 0.98366 0.89329 0.92549 1.66860 1.27643 1.26696 1.03392 1.23193 0.92705 0.88167 0.96305 1.22584 0.83446 1.01156 0.98536 1.22125 0.88757 0.96287 0.90411 0.94203 0.94401 0.91850 0.95624 0.89286 0.87880 0.90668 0.75027 0.84105 0.80247 0.79531 0.78359 0.78372 0.88703 0.88092 0.92006 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.13 11.04 21.65 0.24 -51.90 16 2 C -0.03 -1.87 4.86 84.86 0.41 -1.46 16 3 Si 0.93 46.91 29.59 68.60 2.03 48.94 16 4 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.25 -13.80 9.27 84.03 0.78 -13.02 16 8 H 0.05 2.92 7.89 -2.91 -0.02 2.89 16 9 N -0.60 -28.29 2.54 -698.07 -1.77 -30.06 16 10 C 0.16 6.00 5.63 87.21 0.49 6.50 16 11 C -0.16 -5.37 5.66 29.21 0.17 -5.20 16 12 C 0.13 4.00 5.77 84.40 0.49 4.48 16 13 N -0.58 -20.84 2.45 -834.09 -2.04 -22.89 16 14 C 0.59 24.49 7.66 86.66 0.66 25.15 16 15 O -0.59 -27.02 16.33 -4.04 -0.07 -27.09 16 16 C -0.29 -11.59 5.93 -20.14 -0.12 -11.71 16 17 C 0.08 3.06 8.66 85.67 0.74 3.80 16 18 N -0.30 -11.51 11.74 -56.22 -0.66 -12.17 16 19 N -0.32 -11.41 3.76 -191.04 -0.72 -12.13 16 20 C 0.33 9.82 7.54 132.77 1.00 10.82 16 21 C -0.17 -4.22 9.69 22.48 0.22 -4.00 16 22 C -0.05 -0.70 10.17 22.45 0.23 -0.47 16 23 C -0.16 -1.87 10.11 22.38 0.23 -1.65 16 24 C 0.12 2.00 11.18 84.66 0.95 2.95 16 25 N -0.53 -14.12 9.82 -192.80 -1.89 -16.01 16 26 C 0.14 5.32 10.87 84.21 0.92 6.24 16 27 C 0.07 2.24 4.69 87.55 0.41 2.65 16 28 C 0.15 6.44 4.28 86.56 0.37 6.81 16 29 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.04 1.50 8.02 -2.39 -0.02 1.48 16 31 H 0.06 2.07 7.59 -2.39 -0.02 2.05 16 32 H 0.02 1.09 7.91 -2.39 -0.02 1.08 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 35 H 0.07 2.47 7.08 -2.39 -0.02 2.45 16 36 H 0.23 8.70 2.98 -2.91 -0.01 8.69 16 37 H 0.14 3.61 7.67 -2.91 -0.02 3.59 16 38 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.19 0.48 8.06 -2.91 -0.02 0.45 16 40 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.20 6.77 8.03 -2.91 -0.02 6.75 16 42 H 0.10 2.88 4.68 -2.39 -0.01 2.87 16 43 H 0.10 2.69 7.72 -2.39 -0.02 2.67 16 44 H 0.06 3.03 3.94 -2.39 -0.01 3.02 16 45 H 0.03 1.52 8.02 -2.39 -0.02 1.50 16 Total: -1.00 -76.38 360.76 4.09 -72.30 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.03 Total: 19.10 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: 7.94 Total: 31.90 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -6.85 Total: -145.15 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.07 Total: -27.09 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -76.38 4.09 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982064711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.038 kcal (2) G-P(sol) polarization free energy of solvation -76.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds