Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 120.00035 * 2 1 4 4 H 1.48501 * 109.47143 * 269.99520 * 3 2 1 5 5 H 1.48501 * 109.47329 * 29.99696 * 3 2 1 6 6 H 1.48510 * 109.47300 * 149.99752 * 3 2 1 7 7 C 1.38811 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99962 * 175.21664 * 7 2 1 9 9 N 1.36944 * 120.00147 * 355.22453 * 7 2 1 10 10 C 1.43460 * 118.93625 * 214.86392 * 9 7 2 11 11 C 1.53792 * 107.95973 * 273.62796 * 10 9 7 12 12 C 1.47721 * 111.83689 * 281.59672 * 11 10 9 13 13 N 1.48217 * 110.06129 * 58.37242 * 12 11 10 14 14 C 1.34779 * 119.97241 * 102.59167 * 13 12 11 15 15 O 1.21601 * 120.00574 * 183.23707 * 14 13 12 16 16 C 1.47429 * 119.99693 * 3.23257 * 14 13 12 17 17 C 1.41363 * 126.40893 * 324.63031 * 16 14 13 18 18 N 1.30446 * 108.07520 * 180.02562 * 17 16 14 19 19 N 1.39934 * 108.91694 * 0.02562 * 18 17 16 20 20 C 1.39913 * 125.77638 * 180.02562 * 19 18 17 21 21 C 1.39333 * 120.85539 * 179.73913 * 20 19 18 22 22 C 1.38005 * 119.07836 * 180.27594 * 21 20 19 23 23 N 1.31935 * 120.83775 * 359.97438 * 22 21 20 24 24 C 1.31943 * 121.88199 * 0.02562 * 23 22 21 25 25 C 1.38005 * 120.83214 * 359.97438 * 24 23 22 26 26 C 1.34603 * 108.45077 * 0.25807 * 19 18 17 27 27 C 1.43625 * 120.06214 * 282.31560 * 13 12 11 28 28 C 1.48857 * 118.93849 * 34.84246 * 9 7 2 29 29 H 0.97001 * 119.99968 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.76817 * 33.25110 * 10 9 7 31 31 H 1.09013 * 109.75808 * 153.96144 * 10 9 7 32 32 H 1.08989 * 109.00713 * 42.27944 * 11 10 9 33 33 H 1.09001 * 109.00518 * 161.14561 * 11 10 9 34 34 H 1.08996 * 109.40351 * 298.22971 * 12 11 10 35 35 H 1.09003 * 109.52719 * 178.58685 * 12 11 10 36 36 H 1.08001 * 125.96272 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.45995 * 0.24800 * 21 20 19 38 38 H 1.08007 * 119.58010 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.58293 * 180.02562 * 24 23 22 40 40 H 1.08006 * 120.45948 * 180.02562 * 25 24 23 41 41 H 1.07994 * 126.31600 * 179.74139 * 26 19 18 42 42 H 1.09001 * 108.87400 * 211.69910 * 27 13 12 43 43 H 1.08999 * 108.86691 * 330.23794 * 27 13 12 44 44 H 1.08997 * 109.48108 * 20.64191 * 28 9 7 45 45 H 1.09006 * 109.48661 * 260.61306 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0873 -1.2038 -0.0775 9 7 1.3290 -2.3860 0.0998 10 6 1.9261 -3.4719 0.8226 11 6 2.8326 -4.2465 -0.1487 12 6 2.0551 -5.1395 -1.0320 13 7 1.0671 -4.3529 -1.8078 14 6 1.3064 -4.0593 -3.1013 15 8 0.5248 -3.3645 -3.7219 16 6 2.5159 -4.5805 -3.7639 17 6 3.7859 -4.7617 -3.1700 18 7 4.5922 -5.2405 -4.0768 19 7 3.8888 -5.3865 -5.2776 20 6 4.4147 -5.8722 -6.4798 21 6 3.6169 -5.9800 -7.6170 22 6 4.1721 -6.4692 -8.7819 23 7 5.4399 -6.8316 -8.8267 24 6 6.2273 -6.7446 -7.7715 25 6 5.7483 -6.2655 -6.5691 26 6 2.6220 -4.9759 -5.0820 27 6 -0.1479 -3.9083 -1.1842 28 6 -0.0072 -2.5045 -0.5454 29 1 -0.4850 0.8401 -0.0004 30 1 2.5198 -3.0821 1.6494 31 1 1.1476 -4.1311 1.2068 32 1 3.3872 -3.5352 -0.7604 33 1 3.5384 -4.8461 0.4262 34 1 1.5318 -5.8806 -0.4279 35 1 2.7299 -5.6496 -1.7195 36 1 4.0436 -4.5421 -2.1444 37 1 2.5784 -5.6852 -7.5871 38 1 3.5609 -6.5566 -9.6681 39 1 7.2598 -7.0513 -7.8500 40 1 6.3983 -6.1965 -5.7093 41 1 1.8332 -4.9614 -5.8195 42 1 -0.9382 -3.8768 -1.9343 43 1 -0.4270 -4.6209 -0.4082 44 1 -0.1068 -1.7420 -1.3179 45 1 -0.7865 -2.3665 0.2042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982999279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = 112.931584 kcal Electronic energy + Delta-G solvation = -29740.568631 eV Core-core repulsion = 25760.846119 eV Total energy + Delta-G solvation = -3979.722512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02961 -41.20254 -40.54926 -38.46678 -36.17569 -35.45101 -33.88343 -32.96828 -32.59033 -31.61872 -31.16941 -29.24306 -27.11325 -26.16903 -25.07111 -24.92074 -23.85843 -22.54444 -22.11161 -21.38942 -20.40221 -19.26643 -18.61705 -17.83360 -17.52307 -17.14184 -16.95227 -16.77394 -16.56563 -16.17409 -15.94776 -15.58456 -15.43842 -15.22397 -14.86585 -14.77743 -14.67086 -14.51095 -14.10949 -13.80820 -13.54505 -13.31068 -13.14582 -12.93831 -12.79862 -12.44873 -12.35846 -12.18969 -12.13987 -12.00543 -11.74144 -11.61798 -11.38802 -10.91157 -10.68397 -10.52120 -10.49188 -10.31103 -9.68429 -9.44169 -8.47546 -7.83937 -5.37487 -0.53930 0.01685 0.77870 0.95898 1.06475 1.41883 1.43028 1.51276 2.15088 2.20092 2.50166 2.73362 3.11788 3.31838 3.44683 3.49468 3.68406 3.73385 3.79171 3.82983 4.00717 4.05698 4.16599 4.27844 4.35930 4.41761 4.48863 4.60437 4.61938 4.65138 4.76666 4.84642 4.88422 4.90008 5.00236 5.02743 5.18749 5.31459 5.38941 5.43973 5.55717 5.66885 5.77191 5.79092 5.90738 6.22632 6.47878 6.54331 6.87644 7.22642 7.29993 7.97995 8.41906 9.19846 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.002867 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.480969 B = 9763.905479 C =10157.406259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.956 3.044 4 H -0.295 1.295 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.258 4.258 8 H 0.060 0.940 9 N -0.605 5.605 10 C 0.156 3.844 11 C -0.166 4.166 12 C 0.109 3.891 13 N -0.577 5.577 14 C 0.585 3.415 15 O -0.592 6.592 16 C -0.280 4.280 17 C 0.096 3.904 18 N -0.300 5.300 19 N -0.318 5.318 20 C 0.179 3.821 21 C -0.193 4.193 22 C 0.129 3.871 23 N -0.511 5.511 24 C 0.125 3.875 25 C -0.179 4.179 26 C 0.126 3.874 27 C 0.103 3.897 28 C 0.179 3.821 29 H 0.246 0.754 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.215 0.785 37 H 0.164 0.836 38 H 0.197 0.803 39 H 0.192 0.808 40 H 0.150 0.850 41 H 0.214 0.786 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.029 0.971 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -19.239 -11.401 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.785 3.215 4 H -0.223 1.223 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.077 0.923 9 N -0.328 5.328 10 C 0.029 3.971 11 C -0.206 4.206 12 C -0.012 4.012 13 N -0.306 5.306 14 C 0.374 3.626 15 O -0.474 6.474 16 C -0.294 4.294 17 C -0.092 4.092 18 N -0.117 5.117 19 N -0.091 5.091 20 C 0.079 3.921 21 C -0.216 4.216 22 C -0.028 4.028 23 N -0.221 5.221 24 C -0.031 4.031 25 C -0.201 4.201 26 C -0.021 4.021 27 C -0.022 4.022 28 C 0.053 3.947 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.231 0.769 37 H 0.181 0.819 38 H 0.214 0.786 39 H 0.209 0.791 40 H 0.168 0.832 41 H 0.231 0.769 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.047 0.953 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 10.041 -19.533 -12.745 25.392 hybrid contribution -1.164 2.380 1.283 2.944 sum 8.876 -17.153 -11.461 22.458 Atomic orbital electron populations 1.70141 1.06505 1.25329 1.55881 1.25984 0.96214 1.01268 1.00551 0.85446 0.78531 0.80476 0.77051 1.22263 1.21862 1.18955 1.19320 0.90878 0.84844 1.43883 0.92275 1.43811 1.18312 1.10896 1.59766 1.20489 0.94934 0.89037 0.92602 1.21944 0.99887 0.99254 0.99548 1.21405 0.91586 0.93313 0.94892 1.47308 1.21040 1.52777 1.09460 1.17565 0.84227 0.78912 0.81944 1.90741 1.50334 1.39981 1.66303 1.20298 0.96065 1.17730 0.95319 1.24840 0.89741 0.94471 1.00197 1.77223 1.19975 1.24353 0.90182 1.45662 1.07588 1.47545 1.08347 1.18229 0.94718 0.96394 0.82756 1.22235 1.02609 1.04703 0.92033 1.23202 0.91119 0.91167 0.97320 1.67796 1.06167 1.16723 1.31436 1.23167 1.01008 0.92689 0.86258 1.22087 0.93884 1.02351 1.01794 1.23275 0.87981 0.93933 0.96864 1.21736 0.86166 0.97226 0.97088 1.21558 0.86180 0.92883 0.94055 0.94423 0.94119 0.92860 0.93688 0.87940 0.88445 0.88402 0.76934 0.81854 0.78630 0.79130 0.83211 0.76927 0.92056 0.89108 0.95271 0.96752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 10.62 21.65 0.23 -56.46 16 2 C -0.04 -2.56 5.30 84.86 0.45 -2.11 16 3 Si 0.96 46.58 29.56 68.60 2.03 48.61 16 4 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.26 -14.20 9.18 84.03 0.77 -13.43 16 8 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 9 N -0.61 -29.23 2.53 -698.07 -1.77 -31.00 16 10 C 0.16 5.71 5.63 87.21 0.49 6.21 16 11 C -0.17 -4.63 4.90 29.21 0.14 -4.49 16 12 C 0.11 2.72 5.15 84.40 0.43 3.15 16 13 N -0.58 -19.77 2.45 -834.09 -2.04 -21.81 16 14 C 0.58 22.11 7.58 86.66 0.66 22.77 16 15 O -0.59 -27.56 16.63 -4.03 -0.07 -27.63 16 16 C -0.28 -8.47 5.47 -20.14 -0.11 -8.58 16 17 C 0.10 2.58 9.53 85.67 0.82 3.40 16 18 N -0.30 -7.88 11.87 -56.22 -0.67 -8.55 16 19 N -0.32 -7.58 3.76 -185.65 -0.70 -8.27 16 20 C 0.18 3.50 6.73 38.38 0.26 3.76 16 21 C -0.19 -2.79 9.52 22.48 0.21 -2.58 16 22 C 0.13 1.65 11.17 84.62 0.95 2.60 16 23 N -0.51 -8.25 10.36 -196.05 -2.03 -10.28 16 24 C 0.13 1.79 11.17 84.62 0.95 2.73 16 25 C -0.18 -3.10 9.73 22.48 0.22 -2.88 16 26 C 0.13 3.11 10.79 84.22 0.91 4.02 16 27 C 0.10 3.90 5.23 87.55 0.46 4.36 16 28 C 0.18 8.84 5.14 86.56 0.44 9.28 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.04 1.53 8.02 -2.39 -0.02 1.51 16 31 H 0.05 1.75 7.59 -2.38 -0.02 1.73 16 32 H 0.04 1.50 6.58 -2.39 -0.02 1.48 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.10 1.92 8.05 -2.39 -0.02 1.90 16 35 H 0.10 2.11 4.44 -2.39 -0.01 2.10 16 36 H 0.21 5.21 4.58 -2.91 -0.01 5.19 16 37 H 0.16 1.64 6.85 -2.91 -0.02 1.62 16 38 H 0.20 1.19 8.06 -2.91 -0.02 1.16 16 39 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.15 2.55 7.78 -2.91 -0.02 2.52 16 41 H 0.21 4.00 7.09 -2.91 -0.02 3.98 16 42 H 0.06 2.42 7.42 -2.39 -0.02 2.40 16 43 H 0.09 2.80 7.72 -2.39 -0.02 2.78 16 44 H 0.03 1.73 6.67 -2.39 -0.02 1.71 16 45 H 0.01 0.76 7.95 -2.38 -0.02 0.74 16 Total: -1.00 -78.64 362.45 4.06 -74.57 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.03 Total: 12.62 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 8.05 Total: 28.20 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -6.98 Total: -136.37 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.07 Total: -27.63 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.64 4.06 -74.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982999279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.505 kcal (2) G-P(sol) polarization free energy of solvation -78.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds