Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48503 * 109.46604 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47382 * 239.99781 * 3 2 1 6 6 H 1.48499 * 109.47358 * 119.99456 * 3 2 1 7 7 C 1.38812 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99693 * 214.84192 * 7 2 1 9 9 N 1.36936 * 120.00173 * 34.83374 * 7 2 1 10 10 C 1.43459 * 118.94107 * 203.09234 * 9 7 2 11 11 C 1.53788 * 107.96235 * 273.61382 * 10 9 7 12 12 C 1.47149 * 111.84157 * 281.66662 * 11 10 9 13 13 N 1.48205 * 110.34015 * 58.29404 * 12 11 10 14 14 C 1.34779 * 119.96629 * 102.47336 * 13 12 11 15 15 O 1.21540 * 120.00137 * 357.25651 * 14 13 12 16 16 C 1.47980 * 119.99789 * 177.26608 * 14 13 12 17 17 C 1.39450 * 119.64836 * 187.12208 * 16 14 13 18 18 C 1.38348 * 119.13649 * 179.97438 * 17 16 14 19 19 C 1.39290 * 118.43502 * 0.02562 * 18 17 16 20 20 N 1.39876 * 120.38497 * 180.02562 * 19 18 17 21 21 C 1.37158 * 126.47928 * 180.02562 * 20 19 18 22 22 C 1.34622 * 106.82842 * 179.97438 * 21 20 19 23 23 N 1.34149 * 108.21578 * 359.97438 * 22 21 20 24 24 C 1.30490 * 109.36326 * 359.72529 * 23 22 21 25 25 C 1.39271 * 119.22064 * 359.97438 * 19 18 17 26 26 N 1.31383 * 120.80080 * 359.74883 * 25 19 18 27 27 C 1.43614 * 120.06427 * 282.49344 * 13 12 11 28 28 C 1.48860 * 118.93739 * 22.82597 * 9 7 2 29 29 H 0.96999 * 120.00058 * 185.79840 * 1 2 3 30 30 H 1.08997 * 109.76429 * 33.23106 * 10 9 7 31 31 H 1.09001 * 109.76194 * 153.94215 * 10 9 7 32 32 H 1.08996 * 109.00843 * 42.27456 * 11 10 9 33 33 H 1.09000 * 109.00856 * 161.05907 * 11 10 9 34 34 H 1.09002 * 109.32555 * 178.56748 * 12 11 10 35 35 H 1.09002 * 109.32194 * 298.20485 * 12 11 10 36 36 H 1.07999 * 120.43312 * 359.95470 * 17 16 14 37 37 H 1.08000 * 120.78051 * 179.97438 * 18 17 16 38 38 H 1.08000 * 126.58506 * 359.96761 * 21 20 19 39 39 H 1.08008 * 125.89035 * 180.02562 * 22 21 20 40 40 H 1.08006 * 125.71882 * 180.26607 * 24 23 22 41 41 H 1.07996 * 119.59741 * 179.97438 * 25 19 18 42 42 H 1.09003 * 108.87659 * 211.44540 * 27 13 12 43 43 H 1.08999 * 108.87218 * 329.88294 * 27 13 12 44 44 H 1.08996 * 109.48097 * 260.62373 * 28 9 7 45 45 H 1.09001 * 109.47853 * 20.66043 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1041 1.6963 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9450 -1.2857 0.5350 9 7 1.5096 -2.2821 -0.6764 10 6 1.9227 -3.5991 -0.2852 11 6 3.2284 -3.9270 -1.0287 12 6 2.9797 -4.3176 -2.4254 13 7 2.2695 -3.2338 -3.1448 14 6 2.9468 -2.4279 -3.9864 15 8 4.1481 -2.5580 -4.1173 16 6 2.2279 -1.3847 -4.7509 17 6 2.9051 -0.6552 -5.7276 18 6 2.2225 0.3173 -6.4363 19 6 0.8775 0.5303 -6.1434 20 7 0.1481 1.5028 -6.8353 21 6 -1.1743 1.8160 -6.6496 22 6 -1.4670 2.8019 -7.5182 23 7 -0.3583 3.0877 -8.2173 24 6 0.6174 2.3210 -7.8136 25 6 0.2673 -0.2371 -5.1542 26 7 0.9433 -1.1567 -4.5034 27 6 0.8603 -3.0412 -2.9456 28 6 0.5496 -2.0521 -1.7905 29 1 -0.4850 -0.8357 0.0849 30 1 2.0943 -3.6271 0.7909 31 1 1.1527 -4.3221 -0.5544 32 1 3.8746 -3.0494 -1.0152 33 1 3.7331 -4.7456 -0.5157 34 1 3.9309 -4.5156 -2.9195 35 1 2.3688 -5.2202 -2.4442 36 1 3.9489 -0.8467 -5.9279 37 1 2.7210 0.8982 -7.1982 38 1 -1.8508 1.3592 -5.9424 39 1 -2.4284 3.2809 -7.6319 40 1 1.6276 2.3324 -8.1955 41 1 -0.7751 -0.0767 -4.9218 42 1 0.4233 -2.6561 -3.8670 43 1 0.4021 -4.0030 -2.7154 44 1 -0.4674 -2.2134 -1.4332 45 1 0.6502 -1.0285 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989468829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 130.466382 kcal Electronic energy + Delta-G solvation = -30564.101231 eV Core-core repulsion = 26585.139084 eV Total energy + Delta-G solvation = -3978.962146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.59908 -40.81206 -39.13609 -37.13397 -34.99143 -34.43130 -32.92726 -32.41358 -30.85619 -30.14248 -29.64760 -27.62205 -25.69212 -24.72261 -24.20002 -23.55997 -22.43676 -21.27896 -21.11928 -19.77435 -19.48380 -18.83590 -17.52846 -16.91051 -16.76942 -15.91106 -15.75139 -15.33856 -15.16733 -14.92606 -14.57855 -14.29078 -14.11499 -14.01000 -13.78925 -13.61009 -13.35745 -13.26593 -13.11465 -12.87051 -12.45095 -12.26654 -11.98260 -11.40528 -11.21239 -11.04219 -10.71994 -10.43543 -10.34049 -10.28700 -10.27447 -10.07254 -10.02319 -9.90695 -9.46450 -9.11156 -9.00627 -8.64528 -8.20119 -8.13219 -6.88781 -6.12517 -3.13390 0.17636 0.90164 1.88543 2.31693 2.83468 2.92078 3.24140 3.47278 3.52308 3.68712 3.77115 4.06221 4.21415 4.27227 4.37963 4.56987 4.59397 4.63189 4.92791 5.15624 5.17531 5.27881 5.36954 5.42576 5.49961 5.50301 5.60387 5.63035 5.73257 5.85058 5.92523 6.05453 6.10152 6.12270 6.34436 6.42259 6.43664 6.58928 6.73932 6.75780 6.88679 6.94616 7.14121 7.22879 7.49431 7.70837 7.80973 8.08965 8.41272 8.57603 9.16679 9.88270 10.28307 11.15900 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.004353 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.971270 B = 6430.430349 C = 7728.045604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.012 4.012 3 Si 1.039 2.961 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.359 4.359 8 H 0.053 0.947 9 N -0.595 5.595 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.128 3.872 13 N -0.559 5.559 14 C 0.571 3.429 15 O -0.547 6.547 16 C 0.085 3.915 17 C -0.086 4.086 18 C -0.097 4.097 19 C 0.097 3.903 20 N -0.407 5.407 21 C -0.047 4.047 22 C -0.022 4.022 23 N -0.484 5.484 24 C 0.188 3.812 25 C 0.094 3.906 26 N -0.407 5.407 27 C 0.068 3.932 28 C 0.149 3.851 29 H 0.268 0.732 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.209 0.791 41 H 0.169 0.831 42 H 0.120 0.880 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -3.279 -14.423 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.215 4.215 3 Si 0.869 3.131 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.488 4.488 8 H 0.071 0.929 9 N -0.318 5.318 10 C 0.035 3.965 11 C -0.210 4.210 12 C 0.007 3.993 13 N -0.287 5.287 14 C 0.358 3.642 15 O -0.426 6.426 16 C -0.053 4.053 17 C -0.107 4.107 18 C -0.124 4.124 19 C 0.001 3.999 20 N -0.087 5.087 21 C -0.177 4.177 22 C -0.168 4.168 23 N -0.201 5.201 24 C -0.093 4.093 25 C -0.067 4.067 26 N -0.118 5.118 27 C -0.057 4.057 28 C 0.023 3.977 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.200 0.800 39 H 0.194 0.806 40 H 0.226 0.774 41 H 0.186 0.814 42 H 0.137 0.863 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.706 -1.687 -14.463 14.578 hybrid contribution 0.545 -1.587 0.397 1.724 sum -0.161 -3.273 -14.065 14.442 Atomic orbital electron populations 1.70802 1.06839 1.29923 1.46362 1.25456 0.96009 1.00862 0.99200 0.83907 0.75523 0.77280 0.76396 1.21168 1.22468 1.21864 1.19830 1.04276 0.91758 1.32900 0.92900 1.43806 1.52593 1.01368 1.34004 1.20257 0.92415 0.87317 0.96494 1.21827 1.02295 1.01417 0.95468 1.20667 0.97272 0.88056 0.93339 1.47252 1.10057 1.30918 1.40488 1.17651 0.86143 0.80635 0.79805 1.90735 1.13428 1.70646 1.67755 1.21398 0.90404 0.97559 0.95953 1.21964 1.01924 0.93217 0.93582 1.21237 0.91591 0.98715 1.00882 1.19095 0.92613 0.92220 0.95998 1.43114 1.09678 1.27126 1.28789 1.22931 0.85031 1.03657 1.06064 1.22389 0.98469 0.99090 0.96832 1.70332 0.99591 1.23984 1.26203 1.25318 1.00869 0.91482 0.91603 1.22879 1.01183 0.91440 0.91215 1.68246 1.07303 1.14240 1.21995 1.22789 0.79947 0.99699 1.03289 1.22013 0.91536 0.98605 0.85524 0.92198 0.93635 0.95103 0.91138 0.92498 0.90288 0.91795 0.82428 0.83326 0.79962 0.80635 0.77441 0.81360 0.86317 0.93190 0.95559 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 12.63 55.49 0.70 -25.38 16 2 C -0.01 -0.33 4.36 -17.43 -0.08 -0.41 16 3 Si 1.04 25.71 30.03 -169.99 -5.11 20.61 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.36 -9.93 9.06 -15.06 -0.14 -10.06 16 8 H 0.05 1.52 8.02 -52.49 -0.42 1.10 16 9 N -0.60 -14.32 2.42 -171.79 -0.42 -14.74 16 10 C 0.16 3.34 5.63 -5.24 -0.03 3.31 16 11 C -0.17 -3.07 5.64 -29.13 -0.16 -3.24 16 12 C 0.13 2.11 5.68 -5.91 -0.03 2.07 16 13 N -0.56 -10.08 2.46 -177.50 -0.44 -10.52 16 14 C 0.57 10.69 7.65 -12.27 -0.09 10.60 16 15 O -0.55 -11.17 15.79 5.33 0.08 -11.09 16 16 C 0.08 1.38 6.62 -83.01 -0.55 0.83 16 17 C -0.09 -1.11 9.62 -39.09 -0.38 -1.49 16 18 C -0.10 -1.03 9.57 -39.15 -0.37 -1.40 16 19 C 0.10 1.13 6.66 -83.41 -0.56 0.57 16 20 N -0.41 -4.50 2.98 -61.93 -0.18 -4.69 16 21 C -0.05 -0.49 10.86 -16.45 -0.18 -0.67 16 22 C -0.02 -0.24 11.85 -17.82 -0.21 -0.45 16 23 N -0.48 -6.02 11.24 -14.46 -0.16 -6.18 16 24 C 0.19 1.99 11.93 -89.59 -1.07 0.93 16 25 C 0.09 1.22 10.64 -17.36 -0.18 1.04 16 26 N -0.41 -6.34 4.70 -9.66 -0.05 -6.39 16 27 C 0.07 1.19 4.79 -4.40 -0.02 1.17 16 28 C 0.15 3.27 4.96 -1.56 -0.01 3.26 16 29 H 0.27 7.80 7.03 -40.82 -0.29 7.51 16 30 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 31 H 0.03 0.57 7.59 -51.93 -0.39 0.18 16 32 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 35 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.16 1.86 7.65 -52.49 -0.40 1.46 16 37 H 0.15 1.04 6.88 -52.49 -0.36 0.68 16 38 H 0.18 1.43 7.16 -52.49 -0.38 1.05 16 39 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 40 H 0.21 1.43 7.12 -52.48 -0.37 1.06 16 41 H 0.17 1.82 6.82 -52.49 -0.36 1.46 16 42 H 0.12 1.92 4.70 -68.00 -0.32 1.60 16 43 H 0.05 0.80 7.73 -51.93 -0.40 0.40 16 44 H 0.03 0.60 7.41 -51.93 -0.38 0.22 16 45 H 0.08 1.89 5.79 -51.93 -0.30 1.59 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -34.44 360.34 -9.83 -44.27 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.64 Total: 2.62 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -4.06 Total: 6.05 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -0.54 Total: -67.90 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.11 Total: 20.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.44 -9.83 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989468829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.737 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds