Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48503 * 109.46604 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47382 * 239.99781 * 3 2 1 6 6 H 1.48499 * 109.47358 * 119.99456 * 3 2 1 7 7 C 1.38812 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99693 * 214.84192 * 7 2 1 9 9 N 1.36936 * 120.00173 * 34.83374 * 7 2 1 10 10 C 1.43459 * 118.94107 * 203.09234 * 9 7 2 11 11 C 1.53788 * 107.96235 * 273.61382 * 10 9 7 12 12 C 1.47149 * 111.84157 * 281.66662 * 11 10 9 13 13 N 1.48205 * 110.34015 * 58.29404 * 12 11 10 14 14 C 1.34779 * 119.96629 * 102.47336 * 13 12 11 15 15 O 1.21540 * 120.00137 * 357.25651 * 14 13 12 16 16 C 1.47980 * 119.99789 * 177.26608 * 14 13 12 17 17 C 1.39450 * 119.64836 * 187.12208 * 16 14 13 18 18 C 1.38348 * 119.13649 * 179.97438 * 17 16 14 19 19 C 1.39290 * 118.43502 * 0.02562 * 18 17 16 20 20 N 1.39876 * 120.38497 * 180.02562 * 19 18 17 21 21 C 1.37158 * 126.47928 * 180.02562 * 20 19 18 22 22 C 1.34622 * 106.82842 * 179.97438 * 21 20 19 23 23 N 1.34149 * 108.21578 * 359.97438 * 22 21 20 24 24 C 1.30490 * 109.36326 * 359.72529 * 23 22 21 25 25 C 1.39271 * 119.22064 * 359.97438 * 19 18 17 26 26 N 1.31383 * 120.80080 * 359.74883 * 25 19 18 27 27 C 1.43614 * 120.06427 * 282.49344 * 13 12 11 28 28 C 1.48860 * 118.93739 * 22.82597 * 9 7 2 29 29 H 0.96999 * 120.00058 * 185.79840 * 1 2 3 30 30 H 1.08997 * 109.76429 * 33.23106 * 10 9 7 31 31 H 1.09001 * 109.76194 * 153.94215 * 10 9 7 32 32 H 1.08996 * 109.00843 * 42.27456 * 11 10 9 33 33 H 1.09000 * 109.00856 * 161.05907 * 11 10 9 34 34 H 1.09002 * 109.32555 * 178.56748 * 12 11 10 35 35 H 1.09002 * 109.32194 * 298.20485 * 12 11 10 36 36 H 1.07999 * 120.43312 * 359.95470 * 17 16 14 37 37 H 1.08000 * 120.78051 * 179.97438 * 18 17 16 38 38 H 1.08000 * 126.58506 * 359.96761 * 21 20 19 39 39 H 1.08008 * 125.89035 * 180.02562 * 22 21 20 40 40 H 1.08006 * 125.71882 * 180.26607 * 24 23 22 41 41 H 1.07996 * 119.59741 * 179.97438 * 25 19 18 42 42 H 1.09003 * 108.87659 * 211.44540 * 27 13 12 43 43 H 1.08999 * 108.87218 * 329.88294 * 27 13 12 44 44 H 1.08996 * 109.48097 * 260.62373 * 28 9 7 45 45 H 1.09001 * 109.47853 * 20.66043 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1041 1.6963 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9450 -1.2857 0.5350 9 7 1.5096 -2.2821 -0.6764 10 6 1.9227 -3.5991 -0.2852 11 6 3.2284 -3.9270 -1.0287 12 6 2.9797 -4.3176 -2.4254 13 7 2.2695 -3.2338 -3.1448 14 6 2.9468 -2.4279 -3.9864 15 8 4.1481 -2.5580 -4.1173 16 6 2.2279 -1.3847 -4.7509 17 6 2.9051 -0.6552 -5.7276 18 6 2.2225 0.3173 -6.4363 19 6 0.8775 0.5303 -6.1434 20 7 0.1481 1.5028 -6.8353 21 6 -1.1743 1.8160 -6.6496 22 6 -1.4670 2.8019 -7.5182 23 7 -0.3583 3.0877 -8.2173 24 6 0.6174 2.3210 -7.8136 25 6 0.2673 -0.2371 -5.1542 26 7 0.9433 -1.1567 -4.5034 27 6 0.8603 -3.0412 -2.9456 28 6 0.5496 -2.0521 -1.7905 29 1 -0.4850 -0.8357 0.0849 30 1 2.0943 -3.6271 0.7909 31 1 1.1527 -4.3221 -0.5544 32 1 3.8746 -3.0494 -1.0152 33 1 3.7331 -4.7456 -0.5157 34 1 3.9309 -4.5156 -2.9195 35 1 2.3688 -5.2202 -2.4442 36 1 3.9489 -0.8467 -5.9279 37 1 2.7210 0.8982 -7.1982 38 1 -1.8508 1.3592 -5.9424 39 1 -2.4284 3.2809 -7.6319 40 1 1.6276 2.3324 -8.1955 41 1 -0.7751 -0.0767 -4.9218 42 1 0.4233 -2.6561 -3.8670 43 1 0.4021 -4.0030 -2.7154 44 1 -0.4674 -2.2134 -1.4332 45 1 0.6502 -1.0285 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989468829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 111.361932 kcal Electronic energy + Delta-G solvation = -30564.929662 eV Core-core repulsion = 26585.139084 eV Total energy + Delta-G solvation = -3979.790578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.43196 -41.97212 -40.38046 -38.72826 -36.25550 -35.85471 -34.35557 -33.49589 -32.70657 -31.15313 -30.48835 -29.23404 -27.23353 -25.91321 -25.48908 -25.09307 -23.73503 -22.22224 -21.97973 -21.53793 -20.72471 -19.69846 -19.33766 -18.35386 -18.00403 -17.15656 -16.71943 -16.66032 -16.33656 -16.13653 -15.93839 -15.69837 -15.49543 -15.28295 -14.86826 -14.80905 -14.71282 -14.55368 -14.43976 -14.12276 -13.79208 -13.72894 -13.49913 -12.88377 -12.77590 -12.58535 -12.27614 -12.09742 -12.02076 -11.84326 -11.81643 -11.43978 -11.34306 -11.24375 -10.98021 -10.38096 -10.20377 -9.91557 -9.62379 -9.45754 -8.87447 -8.27872 -5.26770 -0.83187 -0.03442 0.97708 1.46582 1.46835 1.50738 1.67734 1.70810 2.00318 2.07998 2.58883 2.64254 2.96087 3.12336 3.34299 3.35860 3.52153 3.68171 3.70081 3.80368 3.94296 4.05363 4.19000 4.24101 4.38351 4.42666 4.46057 4.52577 4.55640 4.63790 4.70499 4.71520 4.77924 4.94233 5.00127 5.09397 5.15879 5.16892 5.28896 5.38678 5.43887 5.65498 5.72110 5.90297 6.07397 6.33081 6.41574 6.53020 6.90892 7.04671 7.14159 7.87168 8.24578 8.96271 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.004353 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.971270 B = 6430.430349 C = 7728.045604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.052 4.052 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.361 4.361 8 H 0.032 0.968 9 N -0.610 5.610 10 C 0.158 3.842 11 C -0.153 4.153 12 C 0.124 3.876 13 N -0.565 5.565 14 C 0.562 3.438 15 O -0.575 6.575 16 C 0.051 3.949 17 C -0.083 4.083 18 C -0.083 4.083 19 C 0.108 3.892 20 N -0.413 5.413 21 C -0.056 4.056 22 C -0.035 4.035 23 N -0.516 5.516 24 C 0.189 3.811 25 C 0.084 3.916 26 N -0.429 5.429 27 C 0.081 3.919 28 C 0.157 3.843 29 H 0.256 0.744 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.191 0.809 38 H 0.202 0.798 39 H 0.194 0.806 40 H 0.243 0.757 41 H 0.184 0.816 42 H 0.136 0.864 43 H 0.072 0.928 44 H 0.012 0.988 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 -3.401 -16.206 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.252 4.252 3 Si 0.907 3.093 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.491 4.491 8 H 0.050 0.950 9 N -0.333 5.333 10 C 0.031 3.969 11 C -0.193 4.193 12 C 0.003 3.997 13 N -0.293 5.293 14 C 0.350 3.650 15 O -0.455 6.455 16 C -0.086 4.086 17 C -0.104 4.104 18 C -0.110 4.110 19 C 0.011 3.989 20 N -0.093 5.093 21 C -0.185 4.185 22 C -0.179 4.179 23 N -0.233 5.233 24 C -0.091 4.091 25 C -0.078 4.078 26 N -0.140 5.140 27 C -0.044 4.044 28 C 0.032 3.968 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.184 0.816 37 H 0.209 0.791 38 H 0.219 0.781 39 H 0.211 0.789 40 H 0.259 0.741 41 H 0.201 0.799 42 H 0.153 0.847 43 H 0.090 0.910 44 H 0.030 0.970 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.601 -1.836 -16.246 16.360 hybrid contribution 0.486 -1.514 0.918 1.837 sum -0.115 -3.350 -15.327 15.690 Atomic orbital electron populations 1.70893 1.07230 1.29137 1.48595 1.26354 0.96205 1.03147 0.99483 0.83320 0.74689 0.74607 0.76723 1.21148 1.22482 1.20550 1.19907 1.03199 0.93353 1.32670 0.95017 1.44016 1.52840 1.01823 1.34618 1.20420 0.94092 0.86367 0.96010 1.21624 1.00157 1.00616 0.96948 1.20805 0.98207 0.88913 0.91767 1.47405 1.10217 1.31196 1.40514 1.18155 0.86102 0.80929 0.79840 1.90695 1.14510 1.71568 1.68775 1.21236 0.91123 0.98595 0.97682 1.22106 1.02334 0.93110 0.92855 1.21629 0.90994 0.97675 1.00687 1.19120 0.93022 0.91567 0.95143 1.43201 1.09948 1.27161 1.29031 1.23340 0.85172 1.03634 1.06327 1.22798 0.99023 0.99325 0.96720 1.70343 1.00577 1.25123 1.27283 1.26050 1.01905 0.90403 0.90765 1.23127 1.01818 0.91343 0.91510 1.68009 1.07405 1.15684 1.22872 1.22629 0.80157 0.99492 1.02138 1.21876 0.90254 0.98493 0.86183 0.93407 0.95120 0.92565 0.95561 0.89336 0.90135 0.88223 0.81568 0.79147 0.78119 0.78884 0.74142 0.79922 0.84708 0.90973 0.97000 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.19 12.63 21.65 0.27 -53.91 16 2 C -0.05 -2.98 4.36 84.86 0.37 -2.61 16 3 Si 1.08 52.73 30.03 68.60 2.06 54.79 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.36 -20.50 9.06 84.03 0.76 -19.74 16 8 H 0.03 1.90 8.02 -2.91 -0.02 1.87 16 9 N -0.61 -29.75 2.42 -697.41 -1.69 -31.44 16 10 C 0.16 6.40 5.63 87.21 0.49 6.89 16 11 C -0.15 -5.44 5.64 29.04 0.16 -5.27 16 12 C 0.12 3.88 5.68 84.23 0.48 4.35 16 13 N -0.57 -19.97 2.46 -833.77 -2.05 -22.02 16 14 C 0.56 20.97 7.65 86.83 0.66 21.63 16 15 O -0.57 -23.59 15.79 -3.84 -0.06 -23.65 16 16 C 0.05 1.61 6.62 41.88 0.28 1.89 16 17 C -0.08 -2.02 9.62 22.59 0.22 -1.80 16 18 C -0.08 -1.51 9.57 22.55 0.22 -1.29 16 19 C 0.11 2.26 6.66 38.36 0.26 2.52 16 20 N -0.41 -8.08 2.98 -349.84 -1.04 -9.13 16 21 C -0.06 -1.05 10.86 83.03 0.90 -0.15 16 22 C -0.03 -0.69 11.85 83.51 0.99 0.30 16 23 N -0.52 -11.77 11.24 -199.68 -2.25 -14.02 16 24 C 0.19 3.46 11.93 179.99 2.15 5.61 16 25 C 0.08 2.08 10.64 85.01 0.90 2.98 16 26 N -0.43 -13.12 4.70 -184.47 -0.87 -13.99 16 27 C 0.08 2.75 4.79 87.67 0.42 3.17 16 28 C 0.16 6.97 4.96 86.68 0.43 7.40 16 29 H 0.26 15.34 7.03 -92.71 -0.65 14.69 16 30 H 0.03 1.31 8.02 -2.39 -0.02 1.29 16 31 H 0.06 1.98 7.59 -2.39 -0.02 1.97 16 32 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.53 7.15 -2.39 -0.02 2.51 16 35 H 0.10 2.43 8.05 -2.39 -0.02 2.41 16 36 H 0.17 3.69 7.65 -2.91 -0.02 3.67 16 37 H 0.19 1.75 6.88 -2.91 -0.02 1.73 16 38 H 0.20 2.77 7.16 -2.91 -0.02 2.75 16 39 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.24 2.32 7.12 -2.91 -0.02 2.29 16 41 H 0.18 3.75 6.82 -2.91 -0.02 3.73 16 42 H 0.14 4.25 4.70 -34.13 -0.16 4.09 16 43 H 0.07 2.13 7.73 -2.39 -0.02 2.11 16 44 H 0.01 0.56 7.41 -2.39 -0.02 0.55 16 45 H 0.05 2.42 5.79 -2.39 -0.01 2.40 16 Total: -1.00 -77.08 360.34 5.06 -72.02 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.00 Total: 15.46 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 9.69 Total: 25.88 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -7.62 Total: -144.50 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 2.06 Total: 54.79 kcal Total: -77.08 5.06 -72.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989468829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.383 kcal (2) G-P(sol) polarization free energy of solvation -77.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds