Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48497 * 109.47045 * 270.00207 * 3 2 1 5 5 H 1.48499 * 109.46804 * 29.99975 * 3 2 1 6 6 H 1.48497 * 109.47239 * 149.99924 * 3 2 1 7 7 C 1.38814 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99883 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.47371 * 125.58234 * 0.04337 * 9 7 2 11 11 C 1.56223 * 104.46480 * 205.30556 * 10 9 7 12 12 C 1.54916 * 101.15234 * 321.88077 * 11 10 9 13 13 N 1.46491 * 112.33504 * 274.86937 * 12 11 10 14 14 C 1.34772 * 120.00212 * 295.63821 * 13 12 11 15 15 O 1.21598 * 120.00116 * 0.02562 * 14 13 12 16 16 C 1.47505 * 120.00573 * 179.97438 * 14 13 12 17 17 C 1.36881 * 120.61405 * 180.02562 * 16 14 13 18 18 C 1.40136 * 119.25939 * 179.97438 * 17 16 14 19 19 N 1.31146 * 120.46091 * 0.02562 * 18 17 16 20 20 C 1.33698 * 121.18830 * 359.95270 * 19 18 17 21 21 C 1.39063 * 132.56314 * 179.97438 * 20 19 18 22 22 C 1.38498 * 107.67525 * 180.02562 * 21 20 19 23 23 N 1.31536 * 109.03445 * 0.23904 * 22 21 20 24 24 N 1.37296 * 120.63614 * 0.04839 * 20 19 18 25 25 C 1.53590 * 109.57283 * 149.39045 * 12 11 10 26 26 C 1.54176 * 106.69966 * 247.55430 * 25 12 11 27 27 C 1.54763 * 104.36426 * 24.12703 * 26 25 12 28 28 C 1.46977 * 125.57859 * 180.02562 * 9 7 2 29 29 H 1.09010 * 111.81287 * 300.96992 * 28 9 7 30 30 H 0.96998 * 120.00606 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.36782 * 323.48855 * 10 9 7 32 32 H 1.08992 * 110.37016 * 85.81786 * 10 9 7 33 33 H 1.08999 * 110.31860 * 204.36881 * 11 10 9 34 34 H 1.09001 * 112.19579 * 80.20117 * 11 10 9 35 35 H 0.97000 * 119.99866 * 115.63873 * 13 12 11 36 36 H 1.08004 * 120.37457 * 359.96177 * 17 16 14 37 37 H 1.08000 * 119.77000 * 180.02562 * 18 17 16 38 38 H 1.08003 * 126.16113 * 0.02562 * 21 20 19 39 39 H 1.07995 * 125.48946 * 180.02562 * 22 21 20 40 40 H 1.09001 * 110.01726 * 6.00978 * 25 12 11 41 41 H 1.08996 * 110.01736 * 127.39850 * 25 12 11 42 42 H 1.08999 * 109.97680 * 265.60157 * 26 25 12 43 43 H 1.08993 * 110.92141 * 143.12849 * 26 25 12 44 44 H 1.08997 * 110.67220 * 204.23911 * 27 26 25 45 45 H 1.09003 * 110.66793 * 81.10696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1411 -2.5314 -0.0009 11 6 -0.3966 -3.9303 0.6458 12 6 0.7722 -4.7540 0.0498 13 7 0.4515 -5.3003 -1.2711 14 6 -0.5355 -6.2084 -1.4032 15 8 -1.1602 -6.5740 -0.4261 16 6 -0.8589 -6.7581 -2.7333 17 6 -1.8592 -7.6806 -2.8818 18 6 -2.1429 -8.1837 -4.1587 19 7 -1.4584 -7.7768 -5.2007 20 6 -0.4780 -6.8763 -5.0765 21 6 0.3822 -6.2892 -5.9980 22 6 1.2069 -5.4170 -5.3071 23 7 0.8943 -5.4520 -4.0299 24 7 -0.1607 -6.3526 -3.8477 25 6 1.1917 -5.8465 1.0445 26 6 2.6047 -5.4771 1.5385 27 6 2.6976 -3.9468 1.3267 28 6 1.9333 -3.7263 -0.0005 29 1 2.5750 -3.8798 -0.8683 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5987 -1.7508 0.6069 32 1 -0.5256 -2.4943 -1.0201 33 1 -1.3586 -4.3272 0.3216 34 1 -0.3362 -3.8983 1.7337 35 1 0.9495 -5.0084 -2.0506 36 1 -2.4234 -8.0172 -2.0246 37 1 -2.9307 -8.9115 -4.2854 38 1 0.4034 -6.4793 -7.0610 39 1 1.9840 -4.8087 -5.7458 40 1 0.5065 -5.8623 1.8921 41 1 1.1976 -6.8182 0.5509 42 1 3.3552 -5.9916 0.9384 43 1 2.7254 -5.7244 2.5931 44 1 3.7372 -3.6344 1.2287 45 1 2.2104 -3.4150 2.1440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991042716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = 105.223427 kcal Electronic energy + Delta-G solvation = -30638.077254 eV Core-core repulsion = 26658.020491 eV Total energy + Delta-G solvation = -3980.056763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.48042 -41.68773 -39.89375 -38.92430 -36.11913 -35.44490 -34.66387 -33.32940 -32.14560 -31.50837 -30.25943 -28.49450 -28.03187 -26.39655 -25.79733 -24.51505 -23.63551 -22.55670 -21.72405 -21.21387 -20.40757 -19.48071 -18.92402 -18.52993 -18.09248 -17.38836 -17.24934 -16.90113 -16.57878 -16.15447 -15.80173 -15.66515 -15.21061 -15.13705 -14.75612 -14.58297 -14.52709 -14.02955 -13.95170 -13.76749 -13.59626 -13.28769 -12.96249 -12.88865 -12.69058 -12.49071 -12.35345 -12.29781 -12.06382 -11.97858 -11.77116 -11.75267 -11.55940 -11.32993 -11.30846 -10.97087 -10.76789 -10.69048 -10.14627 -9.12160 -8.91667 -7.76695 -5.22317 -1.03770 -0.25417 0.79922 1.26695 1.45920 1.47425 1.56262 1.70170 1.76675 2.35613 2.48362 2.73862 2.87850 3.25528 3.31720 3.39634 3.57037 3.84124 3.86275 3.88337 3.93112 4.09975 4.28823 4.31546 4.35749 4.40271 4.45467 4.50107 4.56949 4.73780 4.77892 4.80252 4.87658 4.93037 5.02036 5.08744 5.15939 5.25532 5.26533 5.40901 5.43347 5.45747 5.52828 5.59220 5.76219 6.14986 6.26432 6.37205 6.44244 6.86088 7.08324 7.76082 8.40487 9.24850 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.003832 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.904852 B = 7306.080099 C = 8323.754456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.227 4.227 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.164 3.836 11 C -0.128 4.128 12 C 0.161 3.839 13 N -0.688 5.688 14 C 0.554 3.446 15 O -0.532 6.532 16 C 0.107 3.893 17 C -0.130 4.130 18 C 0.192 3.808 19 N -0.461 5.461 20 C 0.232 3.768 21 C -0.255 4.255 22 C 0.096 3.904 23 N -0.356 5.356 24 N -0.316 5.316 25 C -0.104 4.104 26 C -0.110 4.110 27 C -0.122 4.122 28 C 0.154 3.846 29 H 0.042 0.958 30 H 0.245 0.755 31 H 0.076 0.924 32 H -0.026 1.026 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.415 0.585 36 H 0.204 0.796 37 H 0.243 0.757 38 H 0.190 0.810 39 H 0.232 0.768 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -19.506 -7.477 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.356 4.356 8 H 0.102 0.898 9 N -0.333 5.333 10 C 0.038 3.962 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.341 5.341 14 C 0.339 3.661 15 O -0.410 6.410 16 C -0.010 4.010 17 C -0.155 4.155 18 C 0.007 3.993 19 N -0.173 5.173 20 C 0.005 3.995 21 C -0.285 4.285 22 C -0.080 4.080 23 N -0.183 5.183 24 N -0.091 5.091 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.162 4.162 28 C 0.047 3.953 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.094 0.906 32 H -0.008 1.008 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.221 0.779 37 H 0.259 0.741 38 H 0.207 0.793 39 H 0.248 0.752 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.834 -19.147 -6.574 20.261 hybrid contribution 0.350 1.628 -0.585 1.765 sum -0.484 -17.519 -7.159 18.931 Atomic orbital electron populations 1.70052 1.06358 1.24830 1.58976 1.25600 0.96475 1.00928 1.02940 0.85066 0.77748 0.79188 0.77273 1.21696 1.22259 1.19073 1.19421 0.91016 0.83294 1.41870 0.89760 1.44674 1.01877 1.00436 1.86350 1.21877 0.84636 0.94345 0.95317 1.23388 0.97294 0.95992 1.00069 1.21708 0.95295 0.93184 0.82310 1.46326 1.35252 1.40830 1.11727 1.17810 0.80936 0.80209 0.87175 1.90811 1.51319 1.60924 1.37904 1.20971 0.95518 0.98875 0.85619 1.22680 0.95180 0.94492 1.03150 1.24367 0.95362 0.94598 0.84968 1.68073 1.05087 1.10333 1.33772 1.21264 0.97058 0.95860 0.85316 1.21430 1.00771 1.05228 1.01111 1.24441 0.98505 0.96246 0.88820 1.77357 1.05364 1.14034 1.21534 1.47467 1.24665 1.29714 1.07225 1.22204 0.97943 0.96485 0.97614 1.22297 0.95680 0.94560 1.02232 1.22763 1.00011 0.96320 0.97140 1.21983 0.92371 0.84186 0.96724 0.94083 0.94536 0.90603 1.00792 0.91995 0.90177 0.74348 0.77880 0.74063 0.79312 0.75162 0.90712 0.91598 0.90683 0.89377 0.91472 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.79 10.07 21.65 0.22 -57.57 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.23 -12.62 10.03 84.03 0.84 -11.78 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.61 -31.46 3.07 -661.04 -2.03 -33.48 16 10 C 0.16 8.58 5.96 87.33 0.52 9.10 16 11 C -0.13 -5.43 5.85 32.37 0.19 -5.25 16 12 C 0.16 6.06 0.71 5.19 0.00 6.07 16 13 N -0.69 -24.92 5.23 -418.94 -2.19 -27.11 16 14 C 0.55 18.38 6.94 86.69 0.60 18.98 16 15 O -0.53 -18.40 14.23 -4.02 -0.06 -18.46 16 16 C 0.11 2.96 6.82 40.36 0.28 3.23 16 17 C -0.13 -2.34 9.61 22.41 0.22 -2.13 16 18 C 0.19 2.61 11.26 85.26 0.96 3.57 16 19 N -0.46 -9.62 10.44 -192.62 -2.01 -11.63 16 20 C 0.23 5.94 7.93 133.23 1.06 7.00 16 21 C -0.26 -5.60 10.91 22.53 0.25 -5.35 16 22 C 0.10 2.21 11.94 84.80 1.01 3.22 16 23 N -0.36 -10.95 9.92 -57.55 -0.57 -11.52 16 24 N -0.32 -9.22 3.94 -181.99 -0.72 -9.94 16 25 C -0.10 -3.23 5.25 31.19 0.16 -3.06 16 26 C -0.11 -3.02 6.83 31.59 0.22 -2.80 16 27 C -0.12 -4.34 6.27 31.79 0.20 -4.14 16 28 C 0.15 6.43 3.59 46.23 0.17 6.59 16 29 H 0.04 1.76 8.00 -2.38 -0.02 1.74 16 30 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.08 4.49 5.83 -2.39 -0.01 4.48 16 32 H -0.03 -1.51 8.14 -2.39 -0.02 -1.52 16 33 H 0.06 2.63 6.82 -2.39 -0.02 2.61 16 34 H 0.08 3.27 7.65 -2.39 -0.02 3.25 16 35 H 0.41 15.54 5.53 -92.71 -0.51 15.03 16 36 H 0.20 2.61 7.65 -2.91 -0.02 2.59 16 37 H 0.24 0.47 8.06 -2.91 -0.02 0.44 16 38 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.23 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.07 2.30 7.41 -2.39 -0.02 2.28 16 41 H 0.07 1.98 7.40 -2.39 -0.02 1.97 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 Total: -1.00 -75.57 360.41 2.33 -73.24 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.52 Total: 28.60 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 7.13 Total: 19.88 kcal Atomic # 7 Polarization: -143.96 SS G_CDS: -7.30 Total: -151.25 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.06 Total: -18.46 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.57 2.33 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991042716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.463 kcal (2) G-P(sol) polarization free energy of solvation -75.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds