Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48504 * 109.46983 * 240.00521 * 3 2 1 5 5 H 1.48503 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00212 * 3 2 1 7 7 C 1.38812 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.49307 * 127.09851 * 0.04094 * 9 7 2 11 11 C 1.56227 * 106.50561 * 171.30926 * 10 9 7 12 12 C 1.52135 * 100.81812 * 336.55610 * 11 10 9 13 13 N 1.46498 * 111.09307 * 286.02468 * 12 11 10 14 14 C 1.34780 * 119.99809 * 288.30455 * 13 12 11 15 15 O 1.21688 * 120.00068 * 0.02562 * 14 13 12 16 16 C 1.46814 * 120.00234 * 180.02562 * 14 13 12 17 17 C 1.40413 * 126.53917 * 359.68832 * 16 14 13 18 18 N 1.30974 * 108.76487 * 179.81861 * 17 16 14 19 19 N 1.39711 * 109.48526 * 0.45217 * 18 17 16 20 20 C 1.36356 * 133.18557 * 179.74374 * 19 18 17 21 21 C 1.35303 * 119.80650 * 180.02562 * 20 19 18 22 22 N 1.33241 * 121.26985 * 359.94693 * 21 20 19 23 23 C 1.31414 * 121.08143 * 0.03277 * 22 21 20 24 24 C 1.36821 * 107.97369 * 359.71225 * 19 18 17 25 25 C 1.51229 * 122.10007 * 151.18698 * 12 11 10 26 26 C 1.55794 * 104.61902 * 218.75222 * 25 12 11 27 27 C 1.56289 * 105.88759 * 7.24345 * 26 25 12 28 28 C 1.42700 * 127.10974 * 180.02562 * 9 7 2 29 29 H 1.08996 * 108.15810 * 104.18394 * 28 9 7 30 30 H 0.96995 * 119.99964 * 359.97438 * 1 2 3 31 31 H 1.08991 * 110.04996 * 290.57269 * 10 9 7 32 32 H 1.08999 * 110.04295 * 51.99612 * 10 9 7 33 33 H 1.09004 * 111.15113 * 94.44921 * 11 10 9 34 34 H 1.09005 * 111.14992 * 218.62429 * 11 10 9 35 35 H 0.96993 * 120.00768 * 108.30912 * 13 12 11 36 36 H 1.07997 * 125.61916 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.09909 * 359.96802 * 20 19 18 38 38 H 1.07994 * 119.36555 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.18193 * 179.97438 * 23 22 21 40 40 H 1.09001 * 110.40332 * 337.53163 * 25 12 11 41 41 H 1.08992 * 110.40869 * 99.85190 * 25 12 11 42 42 H 1.08997 * 110.19423 * 248.13905 * 26 25 12 43 43 H 1.09002 * 110.17104 * 126.33618 * 26 25 12 44 44 H 1.09002 * 110.97072 * 266.12667 * 27 26 25 45 45 H 1.09003 * 110.97182 * 142.40076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1560 -2.5727 -0.0009 11 6 -0.4133 -4.0969 -0.2270 12 6 0.8806 -4.5060 -0.9146 13 7 0.9160 -4.0281 -2.2990 14 6 0.1245 -4.5982 -3.2291 15 8 -0.6197 -5.5096 -2.9188 16 6 0.1603 -4.1197 -4.6166 17 6 0.9571 -3.0799 -5.1220 18 7 0.7152 -2.9480 -6.4025 19 7 -0.2504 -3.8792 -6.7927 20 6 -0.8503 -4.1576 -7.9852 21 6 -1.7746 -5.1428 -8.0593 22 7 -2.1147 -5.8543 -6.9853 23 6 -1.5632 -5.6223 -5.8152 24 6 -0.6008 -4.6110 -5.6910 25 6 1.4462 -5.9036 -0.7968 26 6 2.9864 -5.6966 -0.6873 27 6 3.2029 -4.1539 -0.5611 28 6 1.8807 -3.7027 -0.0005 29 1 1.7791 -4.1143 1.0036 30 1 -0.4850 0.8400 0.0004 31 1 -0.5715 -2.2617 0.9576 32 1 -0.6044 -1.9933 -0.8079 33 1 -0.5372 -4.6198 0.7213 34 1 -1.2731 -4.2583 -0.8774 35 1 1.5090 -3.3015 -2.5463 36 1 1.6563 -2.4882 -4.5499 37 1 -0.5890 -3.5927 -8.8677 38 1 -2.2456 -5.3570 -9.0072 39 1 -1.8500 -6.2076 -4.9541 40 1 1.0640 -6.3940 0.0985 41 1 1.2017 -6.4885 -1.6834 42 1 3.4813 -6.0734 -1.5823 43 1 3.3718 -6.2035 0.1974 44 1 3.3868 -3.7047 -1.5371 45 1 4.0161 -3.9292 0.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991091927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 130.238015 kcal Electronic energy + Delta-G solvation = -30549.921382 eV Core-core repulsion = 26570.949333 eV Total energy + Delta-G solvation = -3978.972049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61930 -40.38637 -38.61998 -37.73198 -34.42551 -33.79902 -33.01161 -31.74172 -31.46098 -30.12698 -29.11007 -26.93394 -25.85049 -24.98757 -24.20545 -23.86177 -22.66036 -20.69623 -20.41556 -19.61594 -18.84791 -18.45706 -17.44655 -16.84174 -16.48160 -16.23968 -15.81447 -15.54373 -15.20671 -14.75518 -14.57728 -14.25204 -13.94006 -13.89694 -13.55849 -13.38422 -13.18257 -13.07556 -12.58921 -12.32497 -11.89131 -11.41792 -11.40076 -11.32309 -11.03038 -11.00649 -10.91816 -10.78245 -10.48135 -10.31621 -10.21541 -10.04499 -9.99700 -9.95165 -9.70116 -9.59679 -9.16075 -8.68573 -8.49890 -7.99712 -6.88777 -5.77095 -3.12037 0.19686 0.63513 1.74154 2.06622 3.07676 3.35879 3.41308 3.42736 3.53378 3.75407 3.96656 3.98910 4.07142 4.43065 4.61141 4.65425 4.73433 4.92187 5.15471 5.21144 5.22898 5.25127 5.45926 5.49844 5.61059 5.74834 5.83952 5.93449 5.96333 6.00166 6.09772 6.16807 6.26595 6.26998 6.33013 6.38761 6.45181 6.51316 6.67556 6.83182 6.91470 7.10515 7.22111 7.36413 7.51173 7.58983 7.76267 8.09071 8.17600 8.72113 9.10634 9.77322 10.46596 11.34721 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011714 B = 0.003956 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.655498 B = 7076.852960 C = 8354.552946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.584 5.584 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.134 3.866 13 N -0.682 5.682 14 C 0.595 3.405 15 O -0.555 6.555 16 C -0.261 4.261 17 C 0.118 3.882 18 N -0.304 5.304 19 N -0.251 5.251 20 C 0.063 3.937 21 C 0.023 3.977 22 N -0.450 5.450 23 C 0.172 3.828 24 C 0.089 3.911 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.114 4.114 28 C 0.158 3.842 29 H 0.023 0.977 30 H 0.253 0.747 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.206 0.794 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.197 0.803 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -11.021 -12.369 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.178 4.178 12 C 0.047 3.953 13 N -0.332 5.332 14 C 0.382 3.618 15 O -0.435 6.435 16 C -0.279 4.279 17 C -0.060 4.060 18 N -0.127 5.127 19 N -0.019 5.019 20 C -0.066 4.066 21 C -0.119 4.119 22 N -0.161 5.161 23 C -0.007 4.007 24 C -0.034 4.034 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.047 3.953 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.223 0.777 37 H 0.197 0.803 38 H 0.201 0.799 39 H 0.214 0.786 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.161 -11.229 -13.434 17.510 hybrid contribution 1.185 1.795 0.610 2.236 sum 1.024 -9.434 -12.824 15.953 Atomic orbital electron populations 1.69909 1.04890 1.25273 1.56275 1.24781 0.95579 0.97577 1.01988 0.86272 0.78515 0.83458 0.77905 1.21155 1.21692 1.21202 1.18958 0.90232 0.82267 1.44662 0.90355 1.43662 1.01734 0.99195 1.86124 1.22015 0.83117 0.88704 1.00736 1.22792 0.96476 0.99392 0.99126 1.21516 0.98614 0.93996 0.81221 1.45424 1.42243 1.37380 1.08129 1.16776 0.80143 0.82036 0.82844 1.90718 1.40724 1.30541 1.81535 1.20006 1.07399 1.05412 0.95083 1.24348 0.96340 0.94369 0.90977 1.77708 1.08404 1.11473 1.15122 1.46241 1.25863 1.22638 1.07149 1.22616 0.95803 1.00088 0.88097 1.22401 0.96879 0.93374 0.99222 1.68275 1.23868 1.25196 0.98742 1.23356 0.88828 0.92139 0.96393 1.20379 0.98860 0.95975 0.88194 1.21882 0.94720 0.96130 1.02285 1.22837 0.95865 0.95863 1.00934 1.21833 0.97825 0.94567 1.01028 1.20852 0.91660 0.87395 0.95344 0.96017 0.93629 0.94754 0.91683 0.91684 0.91270 0.76291 0.77726 0.80303 0.79882 0.78636 0.91151 0.91093 0.92287 0.91996 0.91691 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.76 10.55 55.49 0.59 -25.18 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 3 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -5.97 10.29 -15.06 -0.15 -6.12 16 8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.58 -13.60 3.12 -162.66 -0.51 -14.11 16 10 C 0.18 4.15 5.33 -0.75 0.00 4.15 16 11 C -0.14 -2.69 6.19 -25.44 -0.16 -2.84 16 12 C 0.13 2.35 0.40 -130.69 -0.05 2.30 16 13 N -0.68 -11.53 4.38 -47.81 -0.21 -11.74 16 14 C 0.60 10.04 7.12 -12.79 -0.09 9.95 16 15 O -0.56 -10.25 13.96 5.20 0.07 -10.17 16 16 C -0.26 -3.97 6.16 -104.75 -0.65 -4.62 16 17 C 0.12 1.66 11.44 -17.10 -0.20 1.46 16 18 N -0.30 -4.33 12.60 30.76 0.39 -3.95 16 19 N -0.25 -3.29 3.91 -10.50 -0.04 -3.33 16 20 C 0.06 0.58 11.24 -16.59 -0.19 0.39 16 21 C 0.02 0.20 11.07 -17.99 -0.20 0.00 16 22 N -0.45 -5.14 10.44 -13.26 -0.14 -5.28 16 23 C 0.17 2.20 10.98 -17.01 -0.19 2.01 16 24 C 0.09 1.26 6.77 -84.06 -0.57 0.69 16 25 C -0.11 -1.69 6.04 -26.13 -0.16 -1.85 16 26 C -0.12 -1.58 6.94 -23.47 -0.16 -1.75 16 27 C -0.11 -1.80 6.46 -26.20 -0.17 -1.97 16 28 C 0.16 3.02 2.64 -68.70 -0.18 2.84 16 29 H 0.02 0.45 7.94 -51.93 -0.41 0.04 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.03 0.88 7.98 -51.93 -0.41 0.47 16 32 H 0.06 1.70 7.04 -51.93 -0.37 1.33 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.38 7.18 -51.93 -0.37 1.01 16 35 H 0.40 6.73 6.73 -40.82 -0.27 6.45 16 36 H 0.21 2.44 7.46 -52.49 -0.39 2.04 16 37 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.20 2.43 7.20 -52.49 -0.38 2.05 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.12 6.86 -51.93 -0.36 0.77 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.02 7.38 -51.93 -0.38 0.63 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -31.52 363.14 -8.47 -39.99 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.85 Total: 7.71 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -3.21 Total: 4.48 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 0.08 Total: -63.58 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.52 -8.47 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991091927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.225 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds