Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48495 * 109.47051 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47166 * 120.00264 * 3 2 1 6 6 H 1.48498 * 109.47219 * 240.00283 * 3 2 1 7 7 C 1.38808 * 120.00331 * 180.27655 * 2 1 3 8 8 H 1.08003 * 120.00389 * 149.61265 * 7 2 1 9 9 N 1.36936 * 119.99669 * 329.62232 * 7 2 1 10 10 C 1.49293 * 127.10263 * 342.14271 * 9 7 2 11 11 C 1.56146 * 106.55442 * 188.53396 * 10 9 7 12 12 C 1.52124 * 100.70751 * 23.81856 * 11 10 9 13 13 N 1.46503 * 111.49546 * 73.88536 * 12 11 10 14 14 C 1.34777 * 119.99696 * 71.47479 * 13 12 11 15 15 O 1.21597 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.47578 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.36474 * 125.92371 * 180.02562 * 16 14 13 18 18 N 1.36188 * 107.01512 * 179.97438 * 17 16 14 19 19 C 1.36677 * 132.44925 * 180.02562 * 18 17 16 20 20 C 1.35475 * 119.09978 * 179.97438 * 19 18 17 21 21 C 1.40306 * 119.36132 * 359.97438 * 20 19 18 22 22 N 1.31136 * 120.41117 * 0.02562 * 21 20 19 23 23 C 1.34284 * 120.94961 * 359.97438 * 22 21 20 24 24 N 1.32207 * 131.66042 * 180.34018 * 23 22 21 25 25 C 1.51226 * 122.11803 * 208.58073 * 12 11 10 26 26 C 1.55699 * 104.60874 * 141.26816 * 25 12 11 27 27 C 1.55849 * 105.70421 * 353.18681 * 26 25 12 28 28 C 1.42711 * 127.10136 * 162.46238 * 9 7 2 29 29 H 1.08999 * 108.17309 * 256.52893 * 28 9 7 30 30 H 0.96999 * 119.99998 * 173.88783 * 1 2 3 31 31 H 1.09000 * 110.04894 * 307.92236 * 10 9 7 32 32 H 1.08996 * 110.04845 * 69.40551 * 10 9 7 33 33 H 1.09000 * 111.38906 * 265.88466 * 11 10 9 34 34 H 1.09001 * 111.04265 * 141.60591 * 11 10 9 35 35 H 0.96991 * 120.00377 * 251.47925 * 13 12 11 36 36 H 1.07998 * 126.48971 * 359.93413 * 17 16 14 37 37 H 1.07995 * 120.44534 * 359.97438 * 19 18 17 38 38 H 1.08005 * 120.31730 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.78617 * 179.97438 * 21 20 19 40 40 H 1.09001 * 110.40678 * 260.04529 * 25 12 11 41 41 H 1.08997 * 110.41213 * 22.36655 * 25 12 11 42 42 H 1.08993 * 110.15797 * 111.86364 * 26 25 12 43 43 H 1.09000 * 110.15779 * 233.56278 * 26 25 12 44 44 H 1.09004 * 110.72013 * 216.89586 * 27 26 25 45 45 H 1.09005 * 111.03426 * 93.26744 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0058 8 1 2.9790 -1.2640 -0.4792 9 7 1.4666 -2.3094 0.5886 10 6 0.3548 -2.3427 1.5844 11 6 0.2679 -3.8122 2.1052 12 6 1.6825 -4.2958 1.8241 13 7 2.6428 -3.7272 2.7732 14 6 2.6499 -4.1430 4.0552 15 8 1.8596 -4.9903 4.4239 16 6 3.6168 -3.5698 5.0115 17 6 3.7304 -3.9007 6.3307 18 7 4.7390 -3.1445 6.8458 19 6 5.2817 -3.0596 8.0974 20 6 6.3020 -2.1955 8.3159 21 6 6.7772 -1.4098 7.2551 22 7 6.2401 -1.5091 6.0629 23 6 5.2283 -2.3608 5.8301 24 7 4.5446 -2.6340 4.7320 25 6 1.9941 -5.7481 1.5398 26 6 3.0825 -5.7057 0.4272 27 6 3.2044 -4.2082 0.0131 28 6 1.8500 -3.6695 0.3888 29 1 1.1069 -4.1412 -0.2541 30 1 -0.4850 -0.8353 -0.0894 31 1 0.5718 -1.6644 2.4096 32 1 -0.5836 -2.0622 1.1062 33 1 -0.4647 -4.3907 1.5424 34 1 0.0487 -3.8368 3.1727 35 1 3.2734 -3.0515 2.4790 36 1 3.1330 -4.6246 6.8649 37 1 4.9024 -3.6732 8.9011 38 1 6.7457 -2.1128 9.2971 39 1 7.5900 -0.7183 7.4217 40 1 2.3834 -6.2353 2.4338 41 1 1.1034 -6.2653 1.1832 42 1 4.0352 -6.0608 0.8199 43 1 2.7756 -6.3164 -0.4219 44 1 3.3766 -4.1174 -1.0594 45 1 3.9927 -3.7093 0.5769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991535643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 121.024979 kcal Electronic energy + Delta-G solvation = -30321.514122 eV Core-core repulsion = 26342.142566 eV Total energy + Delta-G solvation = -3979.371556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.25939 -40.54125 -38.78602 -37.66177 -34.90960 -34.64142 -33.08153 -31.86280 -31.22533 -29.88566 -29.49453 -26.77612 -26.24926 -25.30286 -23.84963 -23.58816 -23.20105 -20.74599 -20.46751 -19.60389 -18.95149 -18.58559 -17.79015 -17.13806 -16.99074 -16.62377 -16.06174 -15.72329 -14.89842 -14.72722 -14.55530 -14.45514 -14.17254 -13.95895 -13.61755 -13.57379 -13.37768 -12.72870 -12.63851 -12.62512 -12.09928 -11.94497 -11.76501 -11.39420 -10.87751 -10.82434 -10.77416 -10.62053 -10.43931 -10.27121 -10.13933 -10.07472 -9.94126 -9.87603 -9.46444 -9.44080 -9.35184 -8.59966 -8.43716 -8.31093 -6.87554 -6.03583 -3.08654 0.12535 0.71679 1.91707 2.00377 3.17013 3.18559 3.51346 3.56179 3.63414 3.67165 3.78792 3.95473 4.11587 4.36426 4.49997 4.65797 4.69323 4.89535 5.04402 5.16977 5.20754 5.22651 5.24565 5.39966 5.60633 5.69098 5.74112 5.77382 5.83259 5.97290 6.02706 6.10205 6.17241 6.17849 6.27690 6.32936 6.38578 6.48069 6.56715 6.71555 6.86299 7.00152 7.11902 7.14009 7.21078 7.58703 7.87683 8.03224 8.51613 8.56180 9.08908 9.86187 10.47107 11.27465 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.004147 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.291881 B = 6750.292373 C = 8486.358560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.020 4.020 3 Si 1.056 2.944 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.338 4.338 8 H 0.067 0.933 9 N -0.581 5.581 10 C 0.141 3.859 11 C -0.126 4.126 12 C 0.128 3.872 13 N -0.669 5.669 14 C 0.597 3.403 15 O -0.544 6.544 16 C 0.031 3.969 17 C -0.020 4.020 18 N -0.403 5.403 19 C 0.111 3.889 20 C -0.205 4.205 21 C 0.169 3.831 22 N -0.427 5.427 23 C 0.376 3.624 24 N -0.433 5.433 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.114 4.114 28 C 0.161 3.839 29 H 0.023 0.977 30 H 0.269 0.731 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.200 0.800 37 H 0.177 0.823 38 H 0.166 0.834 39 H 0.184 0.816 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.816 -9.911 17.784 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.222 4.222 3 Si 0.885 3.115 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.466 4.466 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.041 3.959 13 N -0.318 5.318 14 C 0.381 3.619 15 O -0.422 6.422 16 C -0.104 4.104 17 C -0.155 4.155 18 N -0.081 5.081 19 C -0.020 4.020 20 C -0.228 4.228 21 C -0.020 4.020 22 N -0.138 5.138 23 C 0.027 3.973 24 N -0.156 5.156 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.051 3.949 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.217 0.783 37 H 0.194 0.806 38 H 0.184 0.816 39 H 0.201 0.799 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.314 -7.983 16.312 21.397 hybrid contribution 0.165 -2.020 1.385 2.455 sum 11.479 -10.004 17.697 23.345 Atomic orbital electron populations 1.70797 1.06849 1.30103 1.47273 1.25619 0.96230 1.00930 0.99445 0.83666 0.75041 0.76428 0.76322 1.21253 1.22002 1.21992 1.19640 1.01325 0.88629 1.36962 0.91568 1.43639 1.40028 1.00329 1.46481 1.22150 0.92289 0.92433 0.91437 1.22547 0.94763 0.97774 1.01364 1.21608 0.89059 0.93074 0.92186 1.45595 1.36535 1.41899 1.07773 1.16783 0.81922 0.81603 0.81613 1.90762 1.40151 1.32950 1.78327 1.20942 0.98279 0.97952 0.93216 1.22574 0.95296 1.02280 0.95323 1.43932 1.24959 1.28957 1.10232 1.22239 0.94562 0.98995 0.86215 1.21847 0.98960 0.99108 1.02869 1.23381 0.96769 0.95518 0.86323 1.67985 1.06446 1.16030 1.23345 1.21928 0.96795 0.94464 0.84158 1.70906 1.07168 1.15309 1.22249 1.21876 0.99119 0.95225 0.98751 1.22746 0.98420 0.96446 0.97853 1.21748 0.98003 0.94518 1.01010 1.20800 0.95084 0.87589 0.91402 0.96026 0.91990 0.94564 0.93797 0.90835 0.91054 0.74763 0.78312 0.80622 0.81648 0.79906 0.91130 0.90939 0.92227 0.91777 0.91677 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.90 13.02 55.49 0.72 -27.18 16 2 C -0.02 -0.57 5.15 -17.43 -0.09 -0.66 16 3 Si 1.06 26.25 30.01 -169.99 -5.10 21.15 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.34 -9.57 10.01 -15.06 -0.15 -9.72 16 8 H 0.07 1.87 7.99 -52.48 -0.42 1.45 16 9 N -0.58 -14.69 3.00 -162.73 -0.49 -15.18 16 10 C 0.14 3.41 5.84 -0.81 0.00 3.41 16 11 C -0.13 -2.50 6.22 -25.49 -0.16 -2.66 16 12 C 0.13 2.43 0.40 -130.71 -0.05 2.38 16 13 N -0.67 -12.87 4.37 -47.59 -0.21 -13.08 16 14 C 0.60 10.98 7.14 -12.45 -0.09 10.89 16 15 O -0.54 -10.43 15.02 5.28 0.08 -10.35 16 16 C 0.03 0.51 6.94 -83.43 -0.58 -0.06 16 17 C -0.02 -0.25 11.47 -16.25 -0.19 -0.44 16 18 N -0.40 -4.73 2.93 -64.13 -0.19 -4.92 16 19 C 0.11 0.73 11.05 -16.38 -0.18 0.55 16 20 C -0.20 -1.01 10.06 -39.79 -0.40 -1.41 16 21 C 0.17 1.29 11.27 -17.07 -0.19 1.09 16 22 N -0.43 -5.77 10.48 -13.67 -0.14 -5.91 16 23 C 0.38 5.81 8.90 -322.41 -2.87 2.94 16 24 N -0.43 -7.92 11.01 -11.03 -0.12 -8.04 16 25 C -0.11 -1.80 6.03 -26.19 -0.16 -1.96 16 26 C -0.12 -1.75 6.93 -23.77 -0.16 -1.92 16 27 C -0.11 -2.07 6.42 -26.45 -0.17 -2.24 16 28 C 0.16 3.40 2.65 -68.71 -0.18 3.22 16 29 H 0.02 0.49 7.98 -51.93 -0.41 0.07 16 30 H 0.27 8.24 6.09 -40.82 -0.25 7.99 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 1.14 6.15 -51.93 -0.32 0.82 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.42 7.19 -51.93 -0.37 1.05 16 35 H 0.41 8.63 7.44 -40.82 -0.30 8.33 16 36 H 0.20 1.94 8.06 -52.49 -0.42 1.51 16 37 H 0.18 0.43 8.06 -52.49 -0.42 0.00 16 38 H 0.17 0.11 8.06 -52.48 -0.42 -0.31 16 39 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.07 1.17 6.84 -51.93 -0.36 0.82 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 1.26 7.28 -51.93 -0.38 0.89 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -36.80 365.69 -11.40 -48.20 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.84 Total: 6.39 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -5.63 Total: 3.40 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -0.43 Total: -74.30 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.10 Total: 21.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.80 -11.40 -48.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991535643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.222 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds