Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48495 * 109.47051 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47166 * 120.00264 * 3 2 1 6 6 H 1.48498 * 109.47219 * 240.00283 * 3 2 1 7 7 C 1.38808 * 120.00331 * 180.27655 * 2 1 3 8 8 H 1.08003 * 120.00389 * 149.61265 * 7 2 1 9 9 N 1.36936 * 119.99669 * 329.62232 * 7 2 1 10 10 C 1.49293 * 127.10263 * 342.14271 * 9 7 2 11 11 C 1.56146 * 106.55442 * 188.53396 * 10 9 7 12 12 C 1.52124 * 100.70751 * 23.81856 * 11 10 9 13 13 N 1.46503 * 111.49546 * 73.88536 * 12 11 10 14 14 C 1.34777 * 119.99696 * 71.47479 * 13 12 11 15 15 O 1.21597 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.47578 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.36474 * 125.92371 * 180.02562 * 16 14 13 18 18 N 1.36188 * 107.01512 * 179.97438 * 17 16 14 19 19 C 1.36677 * 132.44925 * 180.02562 * 18 17 16 20 20 C 1.35475 * 119.09978 * 179.97438 * 19 18 17 21 21 C 1.40306 * 119.36132 * 359.97438 * 20 19 18 22 22 N 1.31136 * 120.41117 * 0.02562 * 21 20 19 23 23 C 1.34284 * 120.94961 * 359.97438 * 22 21 20 24 24 N 1.32207 * 131.66042 * 180.34018 * 23 22 21 25 25 C 1.51226 * 122.11803 * 208.58073 * 12 11 10 26 26 C 1.55699 * 104.60874 * 141.26816 * 25 12 11 27 27 C 1.55849 * 105.70421 * 353.18681 * 26 25 12 28 28 C 1.42711 * 127.10136 * 162.46238 * 9 7 2 29 29 H 1.08999 * 108.17309 * 256.52893 * 28 9 7 30 30 H 0.96999 * 119.99998 * 173.88783 * 1 2 3 31 31 H 1.09000 * 110.04894 * 307.92236 * 10 9 7 32 32 H 1.08996 * 110.04845 * 69.40551 * 10 9 7 33 33 H 1.09000 * 111.38906 * 265.88466 * 11 10 9 34 34 H 1.09001 * 111.04265 * 141.60591 * 11 10 9 35 35 H 0.96991 * 120.00377 * 251.47925 * 13 12 11 36 36 H 1.07998 * 126.48971 * 359.93413 * 17 16 14 37 37 H 1.07995 * 120.44534 * 359.97438 * 19 18 17 38 38 H 1.08005 * 120.31730 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.78617 * 179.97438 * 21 20 19 40 40 H 1.09001 * 110.40678 * 260.04529 * 25 12 11 41 41 H 1.08997 * 110.41213 * 22.36655 * 25 12 11 42 42 H 1.08993 * 110.15797 * 111.86364 * 26 25 12 43 43 H 1.09000 * 110.15779 * 233.56278 * 26 25 12 44 44 H 1.09004 * 110.72013 * 216.89586 * 27 26 25 45 45 H 1.09005 * 111.03426 * 93.26744 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0058 8 1 2.9790 -1.2640 -0.4792 9 7 1.4666 -2.3094 0.5886 10 6 0.3548 -2.3427 1.5844 11 6 0.2679 -3.8122 2.1052 12 6 1.6825 -4.2958 1.8241 13 7 2.6428 -3.7272 2.7732 14 6 2.6499 -4.1430 4.0552 15 8 1.8596 -4.9903 4.4239 16 6 3.6168 -3.5698 5.0115 17 6 3.7304 -3.9007 6.3307 18 7 4.7390 -3.1445 6.8458 19 6 5.2817 -3.0596 8.0974 20 6 6.3020 -2.1955 8.3159 21 6 6.7772 -1.4098 7.2551 22 7 6.2401 -1.5091 6.0629 23 6 5.2283 -2.3608 5.8301 24 7 4.5446 -2.6340 4.7320 25 6 1.9941 -5.7481 1.5398 26 6 3.0825 -5.7057 0.4272 27 6 3.2044 -4.2082 0.0131 28 6 1.8500 -3.6695 0.3888 29 1 1.1069 -4.1412 -0.2541 30 1 -0.4850 -0.8353 -0.0894 31 1 0.5718 -1.6644 2.4096 32 1 -0.5836 -2.0622 1.1062 33 1 -0.4647 -4.3907 1.5424 34 1 0.0487 -3.8368 3.1727 35 1 3.2734 -3.0515 2.4790 36 1 3.1330 -4.6246 6.8649 37 1 4.9024 -3.6732 8.9011 38 1 6.7457 -2.1128 9.2971 39 1 7.5900 -0.7183 7.4217 40 1 2.3834 -6.2353 2.4338 41 1 1.1034 -6.2653 1.1832 42 1 4.0352 -6.0608 0.8199 43 1 2.7756 -6.3164 -0.4219 44 1 3.3766 -4.1174 -1.0594 45 1 3.9927 -3.7093 0.5769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991535643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 97.466827 kcal Electronic energy + Delta-G solvation = -30322.535680 eV Core-core repulsion = 26342.142566 eV Total energy + Delta-G solvation = -3980.393115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.13900 -42.07799 -39.91592 -38.81204 -36.48145 -35.74438 -34.53448 -33.70805 -32.18603 -31.49047 -30.50182 -28.46911 -27.72038 -26.30764 -25.85128 -24.45074 -24.16740 -22.36611 -21.76967 -21.37323 -20.28256 -19.64683 -19.03635 -18.63593 -18.06579 -17.54345 -17.34672 -16.85097 -16.36921 -16.29472 -15.94528 -15.58507 -15.47062 -15.24322 -15.15982 -15.03292 -14.64497 -14.18139 -13.88103 -13.62790 -13.49853 -13.45366 -13.08508 -12.91770 -12.56690 -12.55562 -12.30889 -12.18059 -12.00118 -11.89849 -11.78499 -11.62792 -11.44284 -11.33962 -10.99345 -10.86364 -10.44571 -10.29381 -10.00880 -9.41199 -9.00387 -8.32266 -5.33342 -0.53249 -0.04695 0.88465 1.22278 1.52301 1.61632 1.79283 2.07423 2.23609 2.49340 2.56844 2.59596 2.92696 3.13974 3.29426 3.49294 3.62311 3.67046 3.76178 3.93014 3.95544 4.08387 4.11965 4.22875 4.27567 4.31163 4.38568 4.51571 4.57340 4.66902 4.68047 4.81597 4.85478 4.88532 4.98033 5.01388 5.06885 5.11436 5.14104 5.18219 5.31653 5.42445 5.49785 5.64264 5.73077 6.27299 6.30526 6.50890 6.79632 6.89181 7.12862 7.67074 8.35163 8.98126 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.004147 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.291881 B = 6750.292373 C = 8486.358560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.073 4.073 3 Si 1.104 2.896 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.062 0.938 9 N -0.596 5.596 10 C 0.149 3.851 11 C -0.113 4.113 12 C 0.138 3.862 13 N -0.678 5.678 14 C 0.599 3.401 15 O -0.557 6.557 16 C -0.017 4.017 17 C 0.002 3.998 18 N -0.404 5.404 19 C 0.102 3.898 20 C -0.185 4.185 21 C 0.186 3.814 22 N -0.491 5.491 23 C 0.362 3.638 24 N -0.497 5.497 25 C -0.105 4.105 26 C -0.102 4.102 27 C -0.111 4.111 28 C 0.144 3.856 29 H 0.020 0.980 30 H 0.256 0.744 31 H 0.001 0.999 32 H 0.021 0.979 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.404 0.596 36 H 0.230 0.770 37 H 0.225 0.775 38 H 0.223 0.777 39 H 0.224 0.776 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.163 -11.401 20.928 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.270 4.270 3 Si 0.930 3.070 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.080 0.920 9 N -0.320 5.320 10 C 0.024 3.976 11 C -0.151 4.151 12 C 0.051 3.949 13 N -0.326 5.326 14 C 0.385 3.615 15 O -0.437 6.437 16 C -0.149 4.149 17 C -0.134 4.134 18 N -0.081 5.081 19 C -0.027 4.027 20 C -0.207 4.207 21 C -0.001 4.001 22 N -0.205 5.205 23 C 0.011 3.989 24 N -0.221 5.221 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.150 4.150 28 C 0.035 3.965 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.039 0.961 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.247 0.753 37 H 0.241 0.759 38 H 0.240 0.760 39 H 0.241 0.759 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.686 -9.523 19.485 25.645 hybrid contribution -0.372 -1.487 0.650 1.665 sum 13.314 -11.010 20.134 26.530 Atomic orbital electron populations 1.70899 1.07700 1.29330 1.50222 1.26873 0.96384 1.04117 0.99650 0.82991 0.74080 0.72831 0.77115 1.21640 1.21913 1.19510 1.19859 1.00885 0.89896 1.36001 0.92043 1.43740 1.40248 1.01566 1.46454 1.21984 0.90935 0.94680 0.89977 1.22451 0.96461 0.94957 1.01252 1.21610 0.88144 0.94636 0.90543 1.45655 1.36433 1.42002 1.08512 1.17022 0.81974 0.81149 0.81395 1.90720 1.40887 1.33590 1.78497 1.20743 0.99487 1.00023 0.94624 1.22889 0.94877 1.01596 0.94034 1.44038 1.24512 1.28062 1.11489 1.23324 0.94534 0.99745 0.85088 1.22515 0.97397 0.96577 1.04195 1.24381 0.95776 0.94663 0.85268 1.68062 1.07919 1.17932 1.26598 1.21997 0.97156 0.95178 0.84572 1.70695 1.09117 1.17327 1.25010 1.21884 1.00306 0.92902 0.99225 1.22684 0.98877 0.94110 0.98294 1.21757 0.95704 0.96601 1.00924 1.21058 0.96759 0.85379 0.93274 0.96229 0.93385 0.98061 0.96115 0.88741 0.91153 0.76068 0.75315 0.75871 0.76043 0.75948 0.91162 0.89098 0.90753 0.89166 0.91501 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.25 13.02 21.65 0.28 -59.97 16 2 C -0.07 -4.43 5.15 84.86 0.44 -3.99 16 3 Si 1.10 54.90 30.01 68.60 2.06 56.96 16 4 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.34 -19.95 10.01 84.03 0.84 -19.11 16 8 H 0.06 3.61 7.99 -2.91 -0.02 3.58 16 9 N -0.60 -31.64 3.00 -668.75 -2.01 -33.65 16 10 C 0.15 7.66 5.84 86.93 0.51 8.17 16 11 C -0.11 -4.61 6.22 31.40 0.20 -4.41 16 12 C 0.14 5.31 0.40 4.32 0.00 5.31 16 13 N -0.68 -27.32 4.37 -422.73 -1.85 -29.17 16 14 C 0.60 22.86 7.14 86.71 0.62 23.48 16 15 O -0.56 -21.56 15.02 -4.02 -0.06 -21.62 16 16 C -0.02 -0.58 6.94 40.76 0.28 -0.30 16 17 C 0.00 0.06 11.47 83.60 0.96 1.02 16 18 N -0.40 -8.83 2.93 -356.82 -1.05 -9.88 16 19 C 0.10 0.90 11.05 83.30 0.92 1.82 16 20 C -0.19 -0.84 10.06 22.13 0.22 -0.62 16 21 C 0.19 2.20 11.27 85.30 0.96 3.16 16 22 N -0.49 -13.05 10.48 -197.16 -2.07 -15.12 16 23 C 0.36 11.33 8.90 261.35 2.33 13.66 16 24 N -0.50 -19.28 11.01 -188.81 -2.08 -21.36 16 25 C -0.10 -3.25 6.03 30.95 0.19 -3.06 16 26 C -0.10 -2.87 6.93 32.51 0.23 -2.65 16 27 C -0.11 -4.06 6.42 30.78 0.20 -3.86 16 28 C 0.14 6.22 2.65 46.47 0.12 6.34 16 29 H 0.02 0.89 7.98 -2.39 -0.02 0.87 16 30 H 0.26 16.60 6.09 -92.71 -0.56 16.04 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.02 1.16 6.15 -2.39 -0.01 1.15 16 33 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.07 2.89 7.19 -2.39 -0.02 2.88 16 35 H 0.40 18.06 7.44 -92.71 -0.69 17.37 16 36 H 0.23 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.22 -0.30 8.06 -2.91 -0.02 -0.33 16 38 H 0.22 -1.47 8.06 -2.91 -0.02 -1.49 16 39 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 40 H 0.07 2.23 6.84 -2.39 -0.02 2.22 16 41 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.05 2.08 7.28 -2.38 -0.02 2.06 16 Total: -1.00 -89.52 365.69 2.79 -86.73 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.55 Total: 22.11 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 9.01 Total: 24.95 kcal Atomic # 7 Polarization: -160.37 SS G_CDS: -8.76 Total: -169.14 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 54.90 SS G_CDS: 2.06 Total: 56.96 kcal Total: -89.52 2.79 -86.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991535643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.193 kcal (2) G-P(sol) polarization free energy of solvation -89.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds