Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99667 * 2 1 4 4 H 1.48503 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47385 * 299.99766 * 3 2 1 6 6 H 1.48506 * 109.47361 * 59.99762 * 3 2 1 7 7 C 1.38806 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00461 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.47373 * 125.57547 * 359.96656 * 9 7 2 11 11 C 1.54871 * 104.81738 * 155.30803 * 10 9 7 12 12 C 1.54908 * 101.76504 * 37.07526 * 11 10 9 13 13 N 1.46505 * 112.33106 * 86.21562 * 12 11 10 14 14 C 1.34777 * 119.99724 * 61.01440 * 13 12 11 15 15 O 1.21593 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.47579 * 119.99797 * 179.72717 * 14 13 12 17 17 C 1.36473 * 125.92171 * 179.97438 * 16 14 13 18 18 N 1.36194 * 107.01428 * 179.83827 * 17 16 14 19 19 C 1.36671 * 132.44813 * 180.12400 * 18 17 16 20 20 C 1.35473 * 119.10248 * 180.31341 * 19 18 17 21 21 C 1.40302 * 119.35908 * 0.02562 * 20 19 18 22 22 N 1.31139 * 120.41167 * 0.02562 * 21 20 19 23 23 C 1.34284 * 120.94469 * 359.97438 * 22 21 20 24 24 N 1.32215 * 131.65448 * 180.02562 * 23 22 21 25 25 C 1.53585 * 109.09311 * 211.32841 * 12 11 10 26 26 C 1.55466 * 106.05481 * 112.99955 * 25 12 11 27 27 C 1.54754 * 104.36459 * 335.35955 * 26 25 12 28 28 C 1.46979 * 125.58033 * 179.97438 * 9 7 2 29 29 H 1.08995 * 111.81198 * 59.07540 * 28 9 7 30 30 H 0.96993 * 119.99871 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.36769 * 36.47633 * 10 9 7 32 32 H 1.08988 * 110.37327 * 274.14370 * 10 9 7 33 33 H 1.09007 * 110.96977 * 278.95739 * 11 10 9 34 34 H 1.09000 * 110.96895 * 155.19737 * 11 10 9 35 35 H 0.97000 * 119.99792 * 241.01008 * 13 12 11 36 36 H 1.08001 * 126.49339 * 359.95131 * 17 16 14 37 37 H 1.08004 * 120.45241 * 0.34162 * 19 18 17 38 38 H 1.08000 * 120.31753 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.79216 * 180.02562 * 21 20 19 40 40 H 1.08998 * 110.01751 * 232.97237 * 25 12 11 41 41 H 1.08994 * 110.01915 * 354.36617 * 25 12 11 42 42 H 1.09002 * 110.50393 * 216.56262 * 26 25 12 43 43 H 1.08999 * 110.39806 * 94.09998 * 26 25 12 44 44 H 1.08999 * 110.66923 * 279.24810 * 27 26 25 45 45 H 1.09000 * 110.66709 * 156.11508 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1410 -2.5314 0.0007 11 6 -0.4029 -3.9237 -0.6248 12 6 0.7724 -4.7539 -0.0512 13 7 0.4655 -5.3168 1.2662 14 6 -0.5631 -6.1759 1.4088 15 8 -1.2367 -6.4835 0.4443 16 6 -0.8686 -6.7476 2.7346 17 6 -1.8764 -7.6237 3.0159 18 7 -1.8045 -7.8997 4.3477 19 6 -2.5497 -8.7028 5.1648 20 6 -2.2379 -8.7739 6.4813 21 6 -1.1603 -8.0229 6.9745 22 7 -0.4607 -7.2586 6.1707 23 6 -0.7571 -7.1774 4.8635 24 7 -0.2056 -6.4890 3.8785 25 6 1.1669 -5.8353 -1.0679 26 6 2.5899 -5.4574 -1.5671 27 6 2.6843 -3.9300 -1.3374 28 6 1.9335 -3.7263 0.0005 29 1 2.5745 -3.8800 0.8686 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5985 -1.7505 -0.6066 32 1 -0.5257 -2.4949 1.0198 33 1 -0.3538 -3.8781 -1.7128 34 1 -1.3614 -4.3251 -0.2956 35 1 1.0026 -5.0712 2.0356 36 1 -2.5939 -8.0239 2.3149 37 1 -3.3756 -9.2734 4.7664 38 1 -2.8133 -9.4025 7.1446 39 1 -0.9053 -8.0747 8.0227 40 1 1.1705 -6.8143 -0.5887 41 1 0.4696 -5.8320 -1.9056 42 1 2.6976 -5.6916 -2.6262 43 1 3.3483 -5.9788 -0.9830 44 1 2.1887 -3.3884 -2.1431 45 1 3.7248 -3.6182 -1.2461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991535652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 110.385665 kcal Electronic energy + Delta-G solvation = -29758.120625 eV Core-core repulsion = 25778.287713 eV Total energy + Delta-G solvation = -3979.832912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.32441 -40.10861 -38.69930 -37.63411 -34.97605 -34.16924 -33.31154 -31.57758 -31.19445 -29.84192 -29.47158 -26.63997 -26.39879 -25.20566 -23.77556 -23.62574 -23.17748 -20.98889 -19.91776 -19.66008 -18.77214 -18.61504 -17.86032 -17.06072 -16.90371 -16.68561 -16.12459 -15.56339 -14.89432 -14.78517 -14.56709 -14.45078 -14.18578 -13.90038 -13.45522 -13.44245 -13.05655 -12.80182 -12.66133 -12.19063 -12.09707 -11.73611 -11.61819 -11.11231 -10.92943 -10.88519 -10.78639 -10.62285 -10.47327 -10.23640 -10.14947 -10.01969 -9.88819 -9.73879 -9.57443 -9.50716 -9.39820 -8.59698 -8.58000 -8.43260 -6.77717 -5.57540 -3.00390 0.06286 0.65662 1.85237 1.94388 3.10397 3.10953 3.43150 3.44687 3.49805 3.52135 3.60195 3.90644 4.05412 4.30259 4.53614 4.60343 4.81101 4.93186 5.06964 5.13096 5.18507 5.21786 5.39949 5.58827 5.70265 5.73314 5.86386 5.93448 6.01844 6.06648 6.11608 6.14513 6.21846 6.33023 6.43684 6.48327 6.60190 6.67145 6.84059 6.86753 7.05204 7.12190 7.19593 7.50516 7.63708 7.72395 7.90329 7.96175 8.43705 8.48488 9.28647 9.89664 10.54101 11.45149 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.002992 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.855243 B = 9356.363251 C =10416.945273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.142 4.142 12 C 0.158 3.842 13 N -0.682 5.682 14 C 0.599 3.401 15 O -0.533 6.533 16 C 0.030 3.970 17 C -0.017 4.017 18 N -0.403 5.403 19 C 0.112 3.888 20 C -0.205 4.205 21 C 0.171 3.829 22 N -0.429 5.429 23 C 0.376 3.624 24 N -0.438 5.438 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.127 4.127 28 C 0.162 3.838 29 H 0.048 0.952 30 H 0.250 0.750 31 H 0.108 0.892 32 H 0.009 0.991 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.409 0.591 36 H 0.201 0.799 37 H 0.177 0.823 38 H 0.166 0.834 39 H 0.184 0.816 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -21.846 10.422 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.182 4.182 12 C 0.072 3.928 13 N -0.331 5.331 14 C 0.383 3.617 15 O -0.409 6.409 16 C -0.104 4.104 17 C -0.152 4.152 18 N -0.080 5.080 19 C -0.019 4.019 20 C -0.228 4.228 21 C -0.018 4.018 22 N -0.140 5.140 23 C 0.027 3.973 24 N -0.162 5.162 25 C -0.150 4.150 26 C -0.162 4.162 27 C -0.168 4.168 28 C 0.054 3.946 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.245 0.755 36 H 0.218 0.782 37 H 0.195 0.805 38 H 0.184 0.816 39 H 0.201 0.799 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.742 -20.638 9.813 23.339 hybrid contribution -0.767 -0.100 0.346 0.848 sum -5.509 -20.738 10.160 23.741 Atomic orbital electron populations 1.69818 1.04855 1.24480 1.57761 1.24777 0.95676 0.97644 1.02624 0.86023 0.78652 0.83825 0.77146 1.20561 1.21859 1.21897 1.19086 0.90478 0.82293 1.42637 0.90444 1.44537 1.01818 0.99191 1.86426 1.21979 0.84381 0.92940 0.97975 1.23348 0.96756 0.98029 1.00019 1.21750 0.97185 0.92517 0.81332 1.45747 1.31453 1.44063 1.11850 1.16741 0.80894 0.79172 0.84934 1.90790 1.50315 1.61312 1.38529 1.20937 0.95803 0.99959 0.93710 1.22613 1.04865 1.05042 0.82698 1.43908 1.24098 1.30697 1.09327 1.22258 0.95958 0.92922 0.90719 1.21849 1.01681 1.04681 0.94606 1.23380 0.89515 0.88882 1.00061 1.67981 1.27956 1.19440 0.98670 1.21905 0.88101 0.95382 0.91956 1.70852 1.26769 1.21977 0.96575 1.22501 0.96788 0.97489 0.98217 1.22569 0.96258 0.97311 1.00097 1.22910 1.00397 0.93900 0.99554 1.21797 0.91606 0.85802 0.95438 0.93410 0.93893 0.87420 0.97307 0.91260 0.91330 0.75480 0.78202 0.80542 0.81612 0.79897 0.92189 0.91053 0.92247 0.92348 0.90648 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.30 10.07 55.49 0.56 -26.74 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.22 -6.01 10.01 -15.06 -0.15 -6.16 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.21 3.03 -161.14 -0.49 -15.70 16 10 C 0.15 3.86 5.91 -2.58 -0.02 3.85 16 11 C -0.14 -3.02 5.71 -24.74 -0.14 -3.16 16 12 C 0.16 3.02 0.74 -129.37 -0.10 2.93 16 13 N -0.68 -12.43 5.22 -46.36 -0.24 -12.67 16 14 C 0.60 10.54 7.01 -12.45 -0.09 10.46 16 15 O -0.53 -10.05 14.68 5.28 0.08 -9.97 16 16 C 0.03 0.47 6.94 -83.43 -0.58 -0.11 16 17 C -0.02 -0.21 11.47 -16.25 -0.19 -0.39 16 18 N -0.40 -4.34 2.93 -64.13 -0.19 -4.53 16 19 C 0.11 0.65 11.05 -16.38 -0.18 0.47 16 20 C -0.21 -0.84 10.06 -39.79 -0.40 -1.24 16 21 C 0.17 1.12 11.27 -17.07 -0.19 0.93 16 22 N -0.43 -5.24 10.48 -13.67 -0.14 -5.38 16 23 C 0.38 5.33 8.90 -322.42 -2.87 2.46 16 24 N -0.44 -7.32 11.01 -11.03 -0.12 -7.44 16 25 C -0.11 -1.87 5.41 -25.12 -0.14 -2.01 16 26 C -0.12 -1.93 6.87 -24.50 -0.17 -2.10 16 27 C -0.13 -2.38 6.22 -24.88 -0.15 -2.54 16 28 C 0.16 3.40 3.67 -65.60 -0.24 3.16 16 29 H 0.05 1.01 7.96 -51.93 -0.41 0.60 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.11 3.06 5.82 -51.93 -0.30 2.76 16 32 H 0.01 0.25 8.14 -51.94 -0.42 -0.18 16 33 H 0.07 1.44 7.63 -51.93 -0.40 1.05 16 34 H 0.07 1.47 6.53 -51.93 -0.34 1.13 16 35 H 0.41 7.43 8.18 -40.82 -0.33 7.10 16 36 H 0.20 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.18 0.31 8.06 -52.48 -0.42 -0.11 16 38 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 39 H 0.18 0.46 8.06 -52.49 -0.42 0.03 16 40 H 0.06 0.99 7.58 -51.93 -0.39 0.60 16 41 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.54 8.09 -51.93 -0.42 1.12 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -35.80 365.11 -11.67 -47.47 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.91 Total: 5.96 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -5.70 Total: 6.11 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -0.62 Total: -72.47 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.80 -11.67 -47.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991535652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.860 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds