Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99667 * 2 1 4 4 H 1.48503 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47385 * 299.99766 * 3 2 1 6 6 H 1.48506 * 109.47361 * 59.99762 * 3 2 1 7 7 C 1.38806 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00461 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.47373 * 125.57547 * 359.96656 * 9 7 2 11 11 C 1.54871 * 104.81738 * 155.30803 * 10 9 7 12 12 C 1.54908 * 101.76504 * 37.07526 * 11 10 9 13 13 N 1.46505 * 112.33106 * 86.21562 * 12 11 10 14 14 C 1.34777 * 119.99724 * 61.01440 * 13 12 11 15 15 O 1.21593 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.47579 * 119.99797 * 179.72717 * 14 13 12 17 17 C 1.36473 * 125.92171 * 179.97438 * 16 14 13 18 18 N 1.36194 * 107.01428 * 179.83827 * 17 16 14 19 19 C 1.36671 * 132.44813 * 180.12400 * 18 17 16 20 20 C 1.35473 * 119.10248 * 180.31341 * 19 18 17 21 21 C 1.40302 * 119.35908 * 0.02562 * 20 19 18 22 22 N 1.31139 * 120.41167 * 0.02562 * 21 20 19 23 23 C 1.34284 * 120.94469 * 359.97438 * 22 21 20 24 24 N 1.32215 * 131.65448 * 180.02562 * 23 22 21 25 25 C 1.53585 * 109.09311 * 211.32841 * 12 11 10 26 26 C 1.55466 * 106.05481 * 112.99955 * 25 12 11 27 27 C 1.54754 * 104.36459 * 335.35955 * 26 25 12 28 28 C 1.46979 * 125.58033 * 179.97438 * 9 7 2 29 29 H 1.08995 * 111.81198 * 59.07540 * 28 9 7 30 30 H 0.96993 * 119.99871 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.36769 * 36.47633 * 10 9 7 32 32 H 1.08988 * 110.37327 * 274.14370 * 10 9 7 33 33 H 1.09007 * 110.96977 * 278.95739 * 11 10 9 34 34 H 1.09000 * 110.96895 * 155.19737 * 11 10 9 35 35 H 0.97000 * 119.99792 * 241.01008 * 13 12 11 36 36 H 1.08001 * 126.49339 * 359.95131 * 17 16 14 37 37 H 1.08004 * 120.45241 * 0.34162 * 19 18 17 38 38 H 1.08000 * 120.31753 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.79216 * 180.02562 * 21 20 19 40 40 H 1.08998 * 110.01751 * 232.97237 * 25 12 11 41 41 H 1.08994 * 110.01915 * 354.36617 * 25 12 11 42 42 H 1.09002 * 110.50393 * 216.56262 * 26 25 12 43 43 H 1.08999 * 110.39806 * 94.09998 * 26 25 12 44 44 H 1.08999 * 110.66923 * 279.24810 * 27 26 25 45 45 H 1.09000 * 110.66709 * 156.11508 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1410 -2.5314 0.0007 11 6 -0.4029 -3.9237 -0.6248 12 6 0.7724 -4.7539 -0.0512 13 7 0.4655 -5.3168 1.2662 14 6 -0.5631 -6.1759 1.4088 15 8 -1.2367 -6.4835 0.4443 16 6 -0.8686 -6.7476 2.7346 17 6 -1.8764 -7.6237 3.0159 18 7 -1.8045 -7.8997 4.3477 19 6 -2.5497 -8.7028 5.1648 20 6 -2.2379 -8.7739 6.4813 21 6 -1.1603 -8.0229 6.9745 22 7 -0.4607 -7.2586 6.1707 23 6 -0.7571 -7.1774 4.8635 24 7 -0.2056 -6.4890 3.8785 25 6 1.1669 -5.8353 -1.0679 26 6 2.5899 -5.4574 -1.5671 27 6 2.6843 -3.9300 -1.3374 28 6 1.9335 -3.7263 0.0005 29 1 2.5745 -3.8800 0.8686 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5985 -1.7505 -0.6066 32 1 -0.5257 -2.4949 1.0198 33 1 -0.3538 -3.8781 -1.7128 34 1 -1.3614 -4.3251 -0.2956 35 1 1.0026 -5.0712 2.0356 36 1 -2.5939 -8.0239 2.3149 37 1 -3.3756 -9.2734 4.7664 38 1 -2.8133 -9.4025 7.1446 39 1 -0.9053 -8.0747 8.0227 40 1 1.1705 -6.8143 -0.5887 41 1 0.4696 -5.8320 -1.9056 42 1 2.6976 -5.6916 -2.6262 43 1 3.3483 -5.9788 -0.9830 44 1 2.1887 -3.3884 -2.1431 45 1 3.7248 -3.6182 -1.2461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991535652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = 87.562750 kcal Electronic energy + Delta-G solvation = -29759.110300 eV Core-core repulsion = 25778.287713 eV Total energy + Delta-G solvation = -3980.822588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.12888 -41.58805 -39.79694 -38.79484 -36.04180 -35.73111 -34.70758 -33.32868 -32.19924 -31.39996 -30.48577 -28.41484 -27.82969 -26.14594 -25.72086 -24.40112 -24.12065 -22.51794 -21.56788 -20.99684 -20.25212 -19.55319 -18.94080 -18.58594 -18.06429 -17.52844 -17.15119 -16.87197 -16.75596 -16.09155 -15.77221 -15.57620 -15.19936 -15.15109 -15.05798 -14.70495 -14.47590 -13.91790 -13.86203 -13.57541 -13.44009 -13.20910 -12.96249 -12.91432 -12.82147 -12.67024 -12.32973 -11.99988 -11.91585 -11.80880 -11.70834 -11.63838 -11.49861 -11.25438 -11.04437 -10.86878 -10.74224 -10.27537 -9.96630 -9.39719 -8.87560 -7.74056 -5.19389 -0.52645 -0.03471 0.88210 1.22889 1.46538 1.47750 1.57997 2.04133 2.22950 2.47411 2.51384 2.57239 3.26150 3.34576 3.39749 3.52109 3.62520 3.65724 3.94580 3.96167 3.96576 4.11614 4.31324 4.36079 4.39446 4.46940 4.56235 4.58222 4.64786 4.69356 4.80548 4.87475 4.95271 5.07627 5.09560 5.16277 5.19172 5.23032 5.31368 5.45799 5.49710 5.52176 5.64227 5.65815 5.81852 6.29567 6.30157 6.48904 6.79286 7.11030 7.12045 7.79266 8.43989 9.27737 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.002992 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.855243 B = 9356.363251 C =10416.945273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.224 4.224 8 H 0.085 0.915 9 N -0.611 5.611 10 C 0.163 3.837 11 C -0.128 4.128 12 C 0.166 3.834 13 N -0.689 5.689 14 C 0.601 3.399 15 O -0.552 6.552 16 C -0.014 4.014 17 C 0.002 3.998 18 N -0.404 5.404 19 C 0.102 3.898 20 C -0.186 4.186 21 C 0.187 3.813 22 N -0.489 5.489 23 C 0.362 3.638 24 N -0.495 5.495 25 C -0.104 4.104 26 C -0.109 4.109 27 C -0.121 4.121 28 C 0.151 3.849 29 H 0.047 0.953 30 H 0.244 0.756 31 H 0.076 0.924 32 H -0.028 1.028 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.229 0.771 37 H 0.223 0.777 38 H 0.222 0.778 39 H 0.225 0.775 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 -25.179 11.866 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.353 4.353 8 H 0.103 0.897 9 N -0.336 5.336 10 C 0.037 3.963 11 C -0.167 4.167 12 C 0.080 3.920 13 N -0.337 5.337 14 C 0.387 3.613 15 O -0.430 6.430 16 C -0.146 4.146 17 C -0.134 4.134 18 N -0.081 5.081 19 C -0.027 4.027 20 C -0.207 4.207 21 C 0.000 4.000 22 N -0.203 5.203 23 C 0.012 3.988 24 N -0.219 5.219 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.160 4.160 28 C 0.044 3.956 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.094 0.906 32 H -0.010 1.010 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.242 0.758 36 H 0.245 0.755 37 H 0.240 0.760 38 H 0.238 0.762 39 H 0.241 0.759 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.022 -24.031 11.271 27.014 hybrid contribution -0.785 0.787 0.213 1.132 sum -5.806 -23.244 11.484 26.568 Atomic orbital electron populations 1.70077 1.06343 1.24667 1.59181 1.25633 0.96542 1.01016 1.03185 0.84976 0.78217 0.79469 0.76478 1.18830 1.21885 1.22466 1.19461 0.91014 0.83321 1.41464 0.89732 1.44743 1.01916 1.00546 1.86353 1.21633 0.84645 0.94493 0.95500 1.23150 0.97708 0.95857 0.99991 1.21642 0.95066 0.92845 0.82487 1.45756 1.32144 1.44540 1.11301 1.17017 0.80020 0.78445 0.85860 1.90748 1.50727 1.62062 1.39474 1.20648 0.98372 1.02781 0.92789 1.22900 1.03605 1.03254 0.83673 1.44010 1.24014 1.31025 1.09026 1.23310 0.96303 0.92013 0.91063 1.22509 1.00310 1.03371 0.94531 1.24374 0.88421 0.86019 1.01148 1.68068 1.30895 1.23016 0.98324 1.22009 0.88831 0.95521 0.92479 1.70651 1.29024 1.24562 0.97699 1.22446 0.97770 0.96711 0.97337 1.22508 0.95627 0.94508 1.02032 1.22750 0.99971 0.96361 0.96963 1.22057 0.92548 0.84156 0.96800 0.93518 0.94602 0.90640 1.00980 0.90696 0.91742 0.75810 0.75487 0.76025 0.76167 0.75910 0.91491 0.90949 0.89687 0.90449 0.92604 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 10.07 21.65 0.22 -59.13 16 2 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 3 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 7 C -0.22 -12.78 10.01 84.03 0.84 -11.94 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.61 -32.59 3.03 -663.72 -2.01 -34.60 16 10 C 0.16 8.83 5.91 86.85 0.51 9.34 16 11 C -0.13 -5.68 5.71 31.89 0.18 -5.50 16 12 C 0.17 6.51 0.74 5.19 0.00 6.51 16 13 N -0.69 -26.41 5.22 -418.85 -2.19 -28.59 16 14 C 0.60 22.09 7.01 86.71 0.61 22.70 16 15 O -0.55 -21.28 14.68 -4.01 -0.06 -21.34 16 16 C -0.01 -0.45 6.94 40.76 0.28 -0.17 16 17 C 0.00 0.04 11.47 83.60 0.96 1.00 16 18 N -0.40 -8.10 2.93 -356.82 -1.05 -9.15 16 19 C 0.10 0.76 11.05 83.30 0.92 1.68 16 20 C -0.19 -0.56 10.06 22.13 0.22 -0.34 16 21 C 0.19 1.82 11.27 85.30 0.96 2.78 16 22 N -0.49 -11.63 10.48 -197.17 -2.07 -13.70 16 23 C 0.36 10.38 8.90 261.35 2.33 12.71 16 24 N -0.49 -17.52 11.01 -188.82 -2.08 -19.60 16 25 C -0.10 -3.40 5.41 31.64 0.17 -3.23 16 26 C -0.11 -3.13 6.87 32.04 0.22 -2.91 16 27 C -0.12 -4.43 6.22 31.80 0.20 -4.23 16 28 C 0.15 6.50 3.67 46.24 0.17 6.67 16 29 H 0.05 2.03 7.96 -2.39 -0.02 2.01 16 30 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.08 4.60 5.82 -2.39 -0.01 4.59 16 32 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 33 H 0.07 3.21 7.63 -2.38 -0.02 3.20 16 34 H 0.06 2.90 6.53 -2.39 -0.02 2.89 16 35 H 0.41 15.90 8.18 -92.71 -0.76 15.14 16 36 H 0.23 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.22 -0.51 8.06 -2.91 -0.02 -0.53 16 38 H 0.22 -1.72 8.06 -2.91 -0.02 -1.74 16 39 H 0.22 0.08 8.06 -2.91 -0.02 0.06 16 40 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 41 H 0.07 2.37 7.37 -2.39 -0.02 2.35 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -86.56 365.11 2.12 -84.44 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.28 Total: 20.99 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 9.04 Total: 31.33 kcal Atomic # 7 Polarization: -155.60 SS G_CDS: -9.17 Total: -164.77 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -86.56 2.12 -84.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991535652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.000 kcal (2) G-P(sol) polarization free energy of solvation -86.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds