Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99960 * 2 1 4 4 H 1.48501 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47114 * 299.99633 * 3 2 1 6 6 H 1.48500 * 109.47350 * 60.00100 * 3 2 1 7 7 C 1.38809 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99655 * 146.21139 * 7 2 1 9 9 N 1.36931 * 120.00546 * 326.20372 * 7 2 1 10 10 C 1.47370 * 125.57745 * 347.43211 * 9 7 2 11 11 C 1.54615 * 104.94675 * 204.59029 * 10 9 7 12 12 C 1.54913 * 101.87418 * 323.25334 * 11 10 9 13 13 N 1.46500 * 112.78153 * 273.35579 * 12 11 10 14 14 C 1.34775 * 119.99912 * 295.93653 * 13 12 11 15 15 O 1.21595 * 120.00071 * 0.02562 * 14 13 12 16 16 C 1.47578 * 120.00085 * 179.97438 * 14 13 12 17 17 C 1.36472 * 125.92285 * 179.71483 * 16 14 13 18 18 N 1.36195 * 107.01810 * 179.88344 * 17 16 14 19 19 C 1.36671 * 132.44959 * 180.10223 * 18 17 16 20 20 C 1.35481 * 119.09829 * 180.31100 * 19 18 17 21 21 C 1.40300 * 119.35947 * 0.02562 * 20 19 18 22 22 N 1.31136 * 120.41628 * 359.97438 * 21 20 19 23 23 C 1.34286 * 120.94288 * 0.02562 * 22 21 20 24 24 N 1.32212 * 131.65821 * 179.97438 * 23 22 21 25 25 C 1.55244 * 108.83909 * 146.90135 * 12 11 10 26 26 C 1.54222 * 106.81968 * 246.33116 * 25 12 11 27 27 C 1.54750 * 104.15802 * 25.64278 * 26 25 12 28 28 C 1.46984 * 125.58021 * 167.73231 * 9 7 2 29 29 H 1.09004 * 111.81133 * 300.92346 * 28 9 7 30 30 H 0.96999 * 120.00425 * 174.26066 * 1 2 3 31 31 H 1.09003 * 110.36871 * 323.52736 * 10 9 7 32 32 H 1.08994 * 110.37319 * 85.86399 * 10 9 7 33 33 H 1.08996 * 111.08031 * 205.02408 * 11 10 9 34 34 H 1.08996 * 110.78257 * 81.35447 * 11 10 9 35 35 H 0.97001 * 119.99653 * 115.94177 * 13 12 11 36 36 H 1.08004 * 126.49250 * 0.02562 * 17 16 14 37 37 H 1.07994 * 120.45131 * 0.33860 * 19 18 17 38 38 H 1.08001 * 120.31405 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.78953 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.36410 * 127.29637 * 25 12 11 41 41 H 1.09001 * 110.56581 * 6.02260 * 25 12 11 42 42 H 1.09000 * 110.49011 * 266.97514 * 26 25 12 43 43 H 1.08997 * 110.60599 * 144.37032 * 26 25 12 44 44 H 1.09005 * 110.67119 * 203.76080 * 27 26 25 45 45 H 1.09000 * 110.67229 * 80.62077 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 2.9534 -1.2814 -0.5196 9 7 1.4990 -2.2876 0.6606 10 6 0.3771 -2.2601 1.6158 11 6 0.5894 -3.4990 2.5161 12 6 1.1371 -4.5374 1.5054 13 7 0.0743 -5.2712 0.8138 14 6 -0.7541 -6.0738 1.5110 15 8 -0.6196 -6.1885 2.7140 16 6 -1.8251 -6.8125 0.8144 17 6 -2.7240 -7.6581 1.3970 18 7 -3.5338 -8.1234 0.4058 19 6 -4.5946 -8.9852 0.4095 20 6 -5.2154 -9.2710 -0.7602 21 6 -4.7561 -8.6777 -1.9457 22 7 -3.7361 -7.8538 -1.9238 23 6 -3.1101 -7.5603 -0.7726 24 7 -2.0804 -6.7745 -0.5077 25 6 2.1442 -5.4656 2.2363 26 6 3.5321 -5.1888 1.6235 27 6 3.4278 -3.7402 1.0892 28 6 1.9836 -3.6697 0.5372 29 1 1.9235 -4.0298 -0.4900 30 1 -0.4851 -0.8358 -0.0840 31 1 0.4083 -1.3478 2.2115 32 1 -0.5731 -2.3369 1.0873 33 1 -0.3528 -3.8352 2.9488 34 1 1.3217 -3.2896 3.2958 35 1 -0.0331 -5.1794 -0.1459 36 1 -2.7836 -7.9088 2.4459 37 1 -4.9335 -9.4320 1.3325 38 1 -6.0554 -9.9497 -0.7800 39 1 -5.2461 -8.9002 -2.8821 40 1 1.8635 -6.5056 2.0700 41 1 2.1582 -5.2495 3.3046 42 1 3.7343 -5.8828 0.8077 43 1 4.3087 -5.2597 2.3850 44 1 4.1527 -3.5706 0.2929 45 1 3.5665 -3.0213 1.8966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991535677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 104.534902 kcal Electronic energy + Delta-G solvation = -29791.154372 eV Core-core repulsion = 25811.067752 eV Total energy + Delta-G solvation = -3980.086620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.36367 -40.18639 -38.76942 -37.74240 -35.01250 -34.40908 -33.45392 -31.69299 -31.28066 -29.87472 -29.53181 -26.62974 -26.42664 -25.28763 -23.69442 -23.67235 -23.24650 -21.01408 -20.08840 -19.70644 -18.91541 -18.67108 -17.91074 -17.37597 -17.12092 -16.72609 -16.20698 -15.71566 -15.03058 -14.82337 -14.51558 -14.43124 -14.24112 -13.67159 -13.56475 -13.48241 -13.38572 -13.01142 -12.74485 -12.53854 -12.22693 -11.82062 -11.68795 -11.48799 -10.94995 -10.88040 -10.60859 -10.54389 -10.38340 -10.24949 -10.22416 -10.13971 -9.96621 -9.86868 -9.72433 -9.54774 -9.52276 -8.68892 -8.53995 -8.24523 -6.89298 -6.06513 -3.00227 0.03024 0.62206 1.79376 1.90485 3.05904 3.06296 3.35921 3.52645 3.58031 3.60815 3.74610 3.87475 4.01152 4.26414 4.56771 4.64184 4.73198 4.85244 4.99710 5.08910 5.11159 5.15137 5.25599 5.38687 5.63982 5.66572 5.72347 5.79749 5.88718 5.97037 6.06942 6.08738 6.10764 6.21461 6.25822 6.38055 6.41226 6.50989 6.62630 6.75734 6.91230 7.01393 7.08724 7.15374 7.18495 7.46457 7.82206 7.88650 8.38007 8.56766 9.08680 9.90483 10.45875 11.27698 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.003002 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.746395 B = 9323.896672 C =10433.483043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.023 4.023 3 Si 1.060 2.940 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.338 4.338 8 H 0.067 0.933 9 N -0.594 5.594 10 C 0.145 3.855 11 C -0.132 4.132 12 C 0.159 3.841 13 N -0.682 5.682 14 C 0.600 3.400 15 O -0.533 6.533 16 C 0.028 3.972 17 C -0.016 4.016 18 N -0.403 5.403 19 C 0.112 3.888 20 C -0.204 4.204 21 C 0.172 3.828 22 N -0.429 5.429 23 C 0.377 3.623 24 N -0.438 5.438 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.125 4.125 28 C 0.161 3.839 29 H 0.047 0.953 30 H 0.269 0.731 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.201 0.799 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.185 0.815 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.606 -22.886 2.055 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.225 4.225 3 Si 0.890 3.110 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.465 4.465 8 H 0.085 0.915 9 N -0.319 5.319 10 C 0.020 3.980 11 C -0.171 4.171 12 C 0.072 3.928 13 N -0.331 5.331 14 C 0.384 3.616 15 O -0.409 6.409 16 C -0.106 4.106 17 C -0.151 4.151 18 N -0.080 5.080 19 C -0.019 4.019 20 C -0.227 4.227 21 C -0.018 4.018 22 N -0.140 5.140 23 C 0.028 3.972 24 N -0.162 5.162 25 C -0.147 4.147 26 C -0.163 4.163 27 C -0.165 4.165 28 C 0.053 3.947 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.218 0.782 37 H 0.195 0.805 38 H 0.184 0.816 39 H 0.202 0.798 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.641 -20.166 1.735 22.008 hybrid contribution -0.871 -2.524 0.573 2.731 sum -9.512 -22.690 2.308 24.712 Atomic orbital electron populations 1.70709 1.06907 1.30192 1.47108 1.25606 0.96168 1.00857 0.99891 0.83636 0.74710 0.76097 0.76559 1.21843 1.22418 1.21799 1.19679 1.03723 0.89354 1.33753 0.91516 1.44604 1.37803 1.01599 1.47873 1.21473 0.90983 0.95254 0.90314 1.23082 1.01206 0.95692 0.97126 1.21935 0.86442 0.90833 0.93551 1.45696 1.31179 1.44146 1.12116 1.16762 0.79995 0.78895 0.85974 1.90793 1.71914 1.65167 1.13068 1.20882 0.99336 1.00764 0.89617 1.22602 0.94913 1.02806 0.94824 1.43914 1.22021 1.30589 1.11496 1.22262 0.86843 0.91138 1.01648 1.21862 1.03852 1.05015 0.91992 1.23395 0.90089 0.89098 0.99175 1.67990 1.08781 1.15177 1.22070 1.21904 0.96113 0.97375 0.81848 1.70850 1.12456 1.18956 1.13913 1.22522 0.93813 0.98743 0.99671 1.22358 0.96352 0.97858 0.99728 1.22859 0.97999 0.94963 1.00673 1.21791 0.91712 0.86021 0.95144 0.93515 0.91998 0.92959 0.96118 0.91099 0.90725 0.75247 0.78197 0.80517 0.81563 0.79842 0.92256 0.90932 0.92267 0.92062 0.92195 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 12.87 55.49 0.71 -27.31 16 2 C -0.02 -0.67 4.95 -17.43 -0.09 -0.75 16 3 Si 1.06 25.96 30.03 -169.99 -5.10 20.85 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.34 -9.55 9.68 -15.06 -0.15 -9.69 16 8 H 0.07 1.89 8.02 -52.48 -0.42 1.47 16 9 N -0.59 -15.05 2.96 -161.29 -0.48 -15.53 16 10 C 0.15 3.54 5.32 -2.72 -0.01 3.53 16 11 C -0.13 -2.67 5.80 -24.87 -0.14 -2.81 16 12 C 0.16 2.97 0.78 -128.49 -0.10 2.87 16 13 N -0.68 -12.27 5.27 -45.56 -0.24 -12.51 16 14 C 0.60 10.34 7.03 -12.45 -0.09 10.25 16 15 O -0.53 -9.76 14.81 5.28 0.08 -9.69 16 16 C 0.03 0.44 6.94 -83.43 -0.58 -0.14 16 17 C -0.02 -0.19 11.47 -16.25 -0.19 -0.38 16 18 N -0.40 -4.29 2.93 -64.13 -0.19 -4.48 16 19 C 0.11 0.64 11.05 -16.38 -0.18 0.46 16 20 C -0.20 -0.83 10.06 -39.79 -0.40 -1.23 16 21 C 0.17 1.13 11.27 -17.07 -0.19 0.93 16 22 N -0.43 -5.26 10.48 -13.67 -0.14 -5.40 16 23 C 0.38 5.34 8.90 -322.41 -2.87 2.47 16 24 N -0.44 -7.32 11.01 -11.03 -0.12 -7.44 16 25 C -0.11 -1.79 5.34 -24.90 -0.13 -1.92 16 26 C -0.12 -1.91 6.84 -25.17 -0.17 -2.08 16 27 C -0.12 -2.33 6.22 -24.88 -0.15 -2.48 16 28 C 0.16 3.40 3.61 -65.60 -0.24 3.16 16 29 H 0.05 1.02 7.97 -51.93 -0.41 0.61 16 30 H 0.27 8.42 6.46 -40.82 -0.26 8.16 16 31 H 0.05 1.39 7.81 -51.93 -0.41 0.98 16 32 H 0.02 0.55 7.04 -51.93 -0.37 0.19 16 33 H 0.07 1.43 6.84 -51.93 -0.36 1.08 16 34 H 0.07 1.45 7.60 -51.93 -0.39 1.06 16 35 H 0.41 7.50 8.18 -40.82 -0.33 7.17 16 36 H 0.20 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.18 0.29 8.06 -52.49 -0.42 -0.14 16 38 H 0.17 -0.02 8.06 -52.49 -0.42 -0.45 16 39 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.06 0.96 7.47 -51.93 -0.39 0.58 16 41 H 0.07 1.18 7.41 -51.93 -0.38 0.79 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -36.73 366.50 -11.55 -48.28 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.90 Total: 5.52 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -5.68 Total: 2.18 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -0.46 Total: -72.67 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.10 Total: 20.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.73 -11.55 -48.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991535677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.812 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds