Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48504 * 109.46900 * 274.96385 * 3 2 1 5 5 H 1.48499 * 109.47059 * 34.96009 * 3 2 1 6 6 H 1.48497 * 109.47212 * 154.96495 * 3 2 1 7 7 C 1.38812 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99914 * 185.70576 * 7 2 1 9 9 N 1.36934 * 119.99992 * 5.70664 * 7 2 1 10 10 C 1.49297 * 127.10459 * 352.78127 * 9 7 2 11 11 C 1.56223 * 106.51102 * 188.64710 * 10 9 7 12 12 C 1.52132 * 100.80960 * 23.45045 * 11 10 9 13 13 N 1.46495 * 111.08446 * 73.95163 * 12 11 10 14 14 C 1.34780 * 120.00230 * 71.69909 * 13 12 11 15 15 O 1.21449 * 119.99976 * 0.02562 * 14 13 12 16 16 C 1.48633 * 120.00137 * 179.97438 * 14 13 12 17 17 N 1.33515 * 120.60118 * 359.72449 * 16 14 13 18 18 C 1.30809 * 122.64815 * 179.69323 * 17 16 14 19 19 N 1.34056 * 123.38375 * 0.60523 * 18 17 16 20 20 H 0.96994 * 120.21351 * 179.68512 * 19 18 17 21 21 C 1.36859 * 119.57114 * 359.70785 * 19 18 17 22 22 N 1.31635 * 135.96264 * 180.02562 * 21 19 18 23 23 C 1.33526 * 110.83919 * 179.97438 * 22 21 19 24 24 C 1.36073 * 110.92809 * 0.02562 * 23 22 21 25 25 C 1.39536 * 120.60222 * 180.02562 * 16 14 13 26 26 C 1.51376 * 122.14447 * 208.73684 * 12 11 10 27 27 C 1.55694 * 104.53377 * 141.24845 * 26 12 11 28 28 C 1.56276 * 105.99664 * 352.81189 * 27 26 12 29 29 C 1.42708 * 127.10396 * 172.76496 * 9 7 2 30 30 H 1.09007 * 108.17607 * 255.89480 * 29 9 7 31 31 H 0.97002 * 120.00374 * 359.97438 * 1 2 3 32 32 H 1.09007 * 110.05212 * 307.90951 * 10 9 7 33 33 H 1.09002 * 110.04852 * 69.38519 * 10 9 7 34 34 H 1.09004 * 111.15755 * 141.33689 * 11 10 9 35 35 H 1.09008 * 111.15329 * 265.56499 * 11 10 9 36 36 H 0.97000 * 120.00214 * 251.69974 * 13 12 11 37 37 H 1.07998 * 118.30495 * 180.28919 * 18 17 16 38 38 H 1.07998 * 124.53676 * 180.02562 * 23 22 21 39 39 H 1.07998 * 126.72483 * 180.02562 * 24 23 22 40 40 H 1.09002 * 110.41804 * 22.50545 * 26 12 11 41 41 H 1.08997 * 110.47116 * 260.02298 * 26 12 11 42 42 H 1.08999 * 110.15790 * 233.66037 * 27 26 12 43 43 H 1.08999 * 110.15720 * 111.96379 * 27 26 12 44 44 H 1.08995 * 110.97286 * 93.82954 * 28 27 26 45 45 H 1.09010 * 110.96935 * 217.55338 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3927 2.1070 -1.3949 5 1 1.5039 2.6201 0.8022 6 1 3.5962 1.4123 0.5925 7 6 2.0103 -1.2021 -0.0005 8 1 3.0863 -1.2044 0.0925 9 7 1.3308 -2.3850 -0.1190 10 6 -0.1496 -2.5785 -0.1065 11 6 -0.3954 -4.1202 -0.0491 12 6 0.9157 -4.5957 0.5587 13 7 0.9808 -4.2769 1.9870 14 6 0.2132 -4.9537 2.8642 15 8 -0.5320 -5.8281 2.4706 16 6 0.2797 -4.6306 4.3135 17 7 1.0994 -3.6761 4.7602 18 6 1.1857 -3.3551 6.0254 19 7 0.4740 -3.9566 6.9891 20 1 0.5776 -3.6846 7.9144 21 6 -0.3995 -4.9572 6.6591 22 7 -1.2309 -5.7412 7.3125 23 6 -1.8619 -6.5677 6.4747 24 6 -1.4608 -6.3584 5.1914 25 6 -0.5089 -5.3236 5.2327 26 6 1.4850 -5.9688 0.2723 27 6 3.0201 -5.7382 0.1526 28 6 3.2277 -4.1899 0.1966 29 6 1.8913 -3.6875 -0.2802 30 1 1.7693 -3.9836 -1.3222 31 1 -0.4851 0.8400 0.0004 32 1 -0.5819 -2.0982 0.7714 33 1 -0.5883 -2.1637 -1.0140 34 1 -1.2388 -4.3603 0.5983 35 1 -0.5386 -4.5332 -1.0477 36 1 1.5762 -3.5788 2.3016 37 1 1.8691 -2.5684 6.3087 38 1 -2.5927 -7.3038 6.7755 39 1 -1.8063 -6.8833 4.3131 40 1 1.0851 -6.3586 -0.6638 41 1 1.2660 -6.6511 1.0936 42 1 3.3878 -6.1398 -0.7916 43 1 3.5371 -6.2103 0.9880 44 1 3.4315 -3.8523 1.2127 45 1 4.0246 -3.8837 -0.4812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991591594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 89.908657 kcal Electronic energy + Delta-G solvation = -30638.580525 eV Core-core repulsion = 26657.859663 eV Total energy + Delta-G solvation = -3980.720861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.95902 -41.90806 -39.78603 -39.52242 -36.15912 -36.09291 -34.44930 -33.53991 -31.72933 -31.41652 -30.11551 -28.53674 -27.61359 -26.44853 -25.88191 -24.54636 -22.94543 -22.16110 -21.79930 -21.22737 -20.31554 -19.49476 -19.21250 -18.31422 -18.01013 -17.38109 -17.32713 -16.89897 -16.43594 -16.12719 -15.90714 -15.68514 -15.59141 -15.04329 -14.91549 -14.22659 -14.11828 -14.05438 -13.97589 -13.55182 -13.48258 -13.03679 -12.99608 -12.82793 -12.71023 -12.56753 -12.19040 -12.09757 -12.01740 -11.80191 -11.67153 -11.54102 -11.34869 -11.18783 -10.88882 -10.71054 -10.61987 -10.00343 -9.71858 -9.01122 -8.83104 -7.81787 -5.16706 -1.36488 0.39031 1.26016 1.49958 1.50284 1.52581 1.60675 1.93208 2.25520 2.53625 2.57499 2.79156 3.07042 3.09078 3.40215 3.51463 3.73337 3.83703 3.89221 4.03861 4.10466 4.23997 4.32161 4.39211 4.43000 4.44085 4.58138 4.63182 4.80544 4.86030 4.94703 4.98474 5.06832 5.12308 5.18201 5.22706 5.30511 5.38661 5.49654 5.58140 5.60291 5.62238 5.66611 5.75034 5.93830 6.20521 6.36560 6.64501 6.80437 7.06909 7.13427 7.79930 8.52781 9.31432 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.004092 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.190065 B = 6840.794428 C = 8070.210717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.260 1.260 7 C -0.230 4.230 8 H 0.091 0.909 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.129 4.129 12 C 0.133 3.867 13 N -0.662 5.662 14 C 0.557 3.443 15 O -0.545 6.545 16 C 0.197 3.803 17 N -0.537 5.537 18 C 0.379 3.621 19 N -0.499 5.499 20 H 0.450 0.550 21 C 0.252 3.748 22 N -0.537 5.537 23 C 0.054 3.946 24 C -0.220 4.220 25 C -0.189 4.189 26 C -0.108 4.108 27 C -0.103 4.103 28 C -0.109 4.109 29 C 0.150 3.850 30 H 0.021 0.979 31 H 0.244 0.756 32 H 0.019 0.981 33 H 0.006 0.994 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.412 0.588 37 H 0.285 0.715 38 H 0.190 0.810 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -9.463 12.452 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.109 0.891 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.168 4.168 12 C 0.045 3.955 13 N -0.311 5.311 14 C 0.341 3.659 15 O -0.423 6.423 16 C 0.060 3.940 17 N -0.257 5.257 18 C 0.096 3.904 19 N -0.104 5.104 20 H 0.294 0.706 21 C -0.002 4.002 22 N -0.258 5.258 23 C -0.088 4.088 24 C -0.244 4.244 25 C -0.202 4.202 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.148 4.148 29 C 0.041 3.959 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.024 0.976 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.300 0.700 38 H 0.207 0.793 39 H 0.157 0.843 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.509 -9.515 12.541 17.034 hybrid contribution -0.527 1.221 -0.136 1.337 sum 5.981 -8.294 12.405 16.076 Atomic orbital electron populations 1.70156 1.06550 1.25121 1.58218 1.25579 0.96250 1.00841 1.02675 0.85144 0.78205 0.79620 0.76869 1.22263 1.22784 1.18465 1.19408 0.91352 0.83072 1.42016 0.89115 1.43778 1.01702 1.01488 1.84891 1.21620 0.83628 0.90219 0.97638 1.22668 0.97001 0.96487 1.00673 1.21691 0.96940 0.96807 0.80053 1.45594 1.41823 1.37460 1.06236 1.18115 0.80880 0.82216 0.84724 1.90709 1.39786 1.32849 1.78953 1.21245 0.89557 0.89461 0.93713 1.67916 1.23710 1.18174 1.15888 1.26128 0.89675 0.92931 0.81618 1.41924 1.28789 1.25053 1.14676 0.70602 1.20684 0.95611 0.93807 0.90119 1.69531 1.11752 1.09724 1.34841 1.23001 0.98987 0.97785 0.89064 1.21581 1.01998 1.01431 0.99424 1.21048 1.03318 1.02592 0.93223 1.21906 0.96307 0.94108 1.02325 1.22759 0.94202 0.94003 1.03139 1.21851 0.95843 0.95750 1.01339 1.21048 0.94179 0.84835 0.95860 0.96124 0.94677 0.96212 0.97573 0.92471 0.89746 0.75060 0.70011 0.79329 0.84295 0.89699 0.91878 0.89516 0.90629 0.91755 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.90 10.61 21.65 0.23 -55.67 16 2 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 3 Si 0.97 43.54 29.56 68.60 2.03 45.57 16 4 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.23 -11.87 10.28 84.03 0.86 -11.00 16 8 H 0.09 4.39 7.84 -2.91 -0.02 4.37 16 9 N -0.60 -28.50 3.12 -668.58 -2.09 -30.59 16 10 C 0.19 9.59 5.29 86.96 0.46 10.05 16 11 C -0.13 -5.23 6.19 31.43 0.19 -5.03 16 12 C 0.13 4.74 0.40 4.37 0.00 4.74 16 13 N -0.66 -23.67 4.38 -421.55 -1.85 -25.51 16 14 C 0.56 20.35 7.16 87.02 0.62 20.97 16 15 O -0.55 -22.02 13.57 -3.55 -0.05 -22.07 16 16 C 0.20 6.26 6.83 41.98 0.29 6.55 16 17 N -0.54 -13.19 9.58 -187.67 -1.80 -14.99 16 18 C 0.38 4.84 12.24 180.48 2.21 7.05 16 19 N -0.50 -6.78 5.32 -191.95 -1.02 -7.80 16 20 H 0.45 2.00 8.93 -92.71 -0.83 1.17 16 21 C 0.25 6.51 8.72 136.29 1.19 7.70 16 22 N -0.54 -15.36 11.16 -188.44 -2.10 -17.46 16 23 C 0.05 1.53 11.70 83.93 0.98 2.51 16 24 C -0.22 -7.13 10.25 22.36 0.23 -6.90 16 25 C -0.19 -6.05 6.19 -19.88 -0.12 -6.17 16 26 C -0.11 -3.16 6.05 30.99 0.19 -2.97 16 27 C -0.10 -2.51 6.93 32.66 0.23 -2.29 16 28 C -0.11 -3.27 6.47 30.93 0.20 -3.07 16 29 C 0.15 5.71 2.64 46.47 0.12 5.83 16 30 H 0.02 0.84 7.94 -2.38 -0.02 0.82 16 31 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.02 1.11 7.32 -2.38 -0.02 1.09 16 33 H 0.01 0.33 7.82 -2.39 -0.02 0.32 16 34 H 0.06 2.43 7.18 -2.39 -0.02 2.41 16 35 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 36 H 0.41 15.04 7.20 -92.71 -0.67 14.38 16 37 H 0.28 -0.24 8.06 -2.91 -0.02 -0.26 16 38 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.14 4.69 7.38 -2.91 -0.02 4.67 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 41 H 0.06 1.97 6.86 -2.39 -0.02 1.95 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.95 7.38 -2.39 -0.02 1.94 16 45 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -79.06 362.41 1.03 -78.02 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.44 Total: 25.34 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 8.12 Total: 25.16 kcal Atomic # 7 Polarization: -143.40 SS G_CDS: -8.62 Total: -152.02 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -79.06 1.03 -78.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991591594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.933 kcal (2) G-P(sol) polarization free energy of solvation -79.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds