Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48494 * 109.47418 * 269.99901 * 3 2 1 5 5 H 1.48509 * 109.47013 * 29.99904 * 3 2 1 6 6 H 1.48504 * 109.47219 * 149.99402 * 3 2 1 7 7 C 1.38807 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00061 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.49289 * 127.10073 * 359.97438 * 9 7 2 11 11 C 1.56979 * 106.43797 * 171.65983 * 10 9 7 12 12 C 1.52128 * 100.46563 * 336.09031 * 11 10 9 13 13 N 1.46497 * 111.08511 * 286.47225 * 12 11 10 14 14 C 1.34767 * 120.00365 * 288.30434 * 13 12 11 15 15 O 1.21452 * 120.00204 * 359.97438 * 14 13 12 16 16 C 1.48636 * 120.00398 * 179.97438 * 14 13 12 17 17 N 1.33511 * 120.60070 * 0.02672 * 16 14 13 18 18 C 1.30804 * 122.65656 * 179.97438 * 17 16 14 19 19 N 1.34060 * 123.37906 * 359.97438 * 18 17 16 20 20 H 0.96999 * 120.21377 * 179.97438 * 19 18 17 21 21 C 1.36859 * 119.57059 * 0.02562 * 19 18 17 22 22 N 1.31644 * 135.95624 * 180.02562 * 21 19 18 23 23 C 1.33521 * 110.83038 * 179.71828 * 22 21 19 24 24 C 1.36077 * 110.93394 * 0.42696 * 23 22 21 25 25 C 1.39536 * 120.60754 * 179.97438 * 16 14 13 26 26 C 1.51232 * 122.55443 * 151.79719 * 12 11 10 27 27 C 1.55057 * 104.91124 * 219.09916 * 26 12 11 28 28 C 1.56282 * 105.91917 * 6.67143 * 27 26 12 29 29 C 1.42711 * 127.10400 * 179.97438 * 9 7 2 30 30 H 1.09002 * 108.18074 * 103.43138 * 29 9 7 31 31 H 0.97002 * 119.99935 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.04671 * 290.61025 * 10 9 7 33 33 H 1.09005 * 110.05323 * 52.08589 * 10 9 7 34 34 H 1.09002 * 110.94439 * 218.47708 * 11 10 9 35 35 H 1.09003 * 111.67766 * 94.01558 * 11 10 9 36 36 H 0.97006 * 119.99496 * 108.29915 * 13 12 11 37 37 H 1.07998 * 118.31293 * 180.02562 * 18 17 16 38 38 H 1.08008 * 124.53326 * 180.29701 * 23 22 21 39 39 H 1.08002 * 126.72778 * 179.85811 * 24 23 22 40 40 H 1.08995 * 110.40867 * 337.32182 * 26 12 11 41 41 H 1.08993 * 110.40890 * 99.76582 * 26 12 11 42 42 H 1.08998 * 109.84781 * 247.73055 * 27 26 12 43 43 H 1.09005 * 110.53964 * 125.98826 * 27 26 12 44 44 H 1.08994 * 110.97300 * 266.52195 * 28 27 26 45 45 H 1.09009 * 110.96565 * 142.75602 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1558 -2.5727 0.0005 11 6 -0.4124 -4.1059 -0.2179 12 6 0.8805 -4.5063 -0.9123 13 7 0.9082 -4.0218 -2.2946 14 6 0.1155 -4.5909 -3.2242 15 8 -0.6215 -5.5057 -2.9161 16 6 0.1432 -4.0989 -4.6265 17 7 0.9491 -3.0944 -4.9786 18 6 1.0062 -2.6303 -6.2002 19 7 0.2674 -3.1147 -7.2085 20 1 0.3463 -2.7351 -8.0976 21 6 -0.5995 -4.1477 -6.9750 22 7 -1.4495 -4.8505 -7.6937 23 6 -2.0556 -5.7739 -6.9436 24 6 -1.6246 -5.7125 -5.6544 25 6 -0.6718 -4.6793 -5.5991 26 6 1.4598 -5.8997 -0.8132 27 6 2.9917 -5.6879 -0.7005 28 6 3.2025 -4.1451 -0.5679 29 6 1.8809 -3.7027 0.0005 30 1 1.7916 -4.1096 1.0078 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5712 -2.2612 0.9590 33 1 -0.6045 -1.9945 -0.8073 34 1 -1.2736 -4.2684 -0.8661 35 1 -0.5301 -4.6333 0.7288 36 1 1.4971 -3.2913 -2.5407 37 1 1.6839 -1.8153 -6.4073 38 1 -2.7912 -6.4745 -7.3105 39 1 -1.9472 -6.3379 -4.8350 40 1 1.0901 -6.4023 0.0805 41 1 1.2147 -6.4775 -1.7042 42 1 3.4836 -6.0583 -1.5999 43 1 3.3846 -6.1978 0.1791 44 1 3.3797 -3.6903 -1.5425 45 1 4.0179 -3.9205 0.1198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991591598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = 90.633885 kcal Electronic energy + Delta-G solvation = -30684.676879 eV Core-core repulsion = 26703.987466 eV Total energy + Delta-G solvation = -3980.689413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.95997 -41.91203 -39.78471 -39.51908 -36.16868 -36.09338 -34.45224 -33.52010 -31.72296 -31.40916 -30.11362 -28.54482 -27.60076 -26.43803 -25.89191 -24.54809 -22.94747 -22.16557 -21.79510 -21.22124 -20.30770 -19.48768 -19.21372 -18.31710 -18.01357 -17.38104 -17.31645 -16.89918 -16.43321 -16.12927 -15.90555 -15.67906 -15.59769 -15.03585 -14.91631 -14.23236 -14.12286 -14.05547 -13.97630 -13.53833 -13.48012 -13.04375 -12.97814 -12.83276 -12.68639 -12.55382 -12.20309 -12.08711 -12.03520 -11.78862 -11.66579 -11.54428 -11.33760 -11.18098 -10.88351 -10.71272 -10.61991 -10.00036 -9.71947 -9.01034 -8.84428 -7.79515 -5.15558 -1.36522 0.38906 1.25772 1.50105 1.50959 1.52859 1.61007 1.93640 2.25500 2.54333 2.57633 2.79174 3.07132 3.09469 3.40851 3.51517 3.73562 3.83652 3.89965 4.03576 4.09988 4.23237 4.31204 4.40621 4.43515 4.44390 4.57780 4.63265 4.81379 4.85999 4.94876 4.98756 5.06975 5.12250 5.18218 5.22926 5.30183 5.38533 5.51230 5.56891 5.61049 5.62329 5.66668 5.76497 5.93828 6.20947 6.36763 6.64756 6.80343 7.07650 7.13711 7.80715 8.52803 9.32448 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.004216 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.224582 B = 6639.404132 C = 7940.117390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.061 4.061 3 Si 0.973 3.027 4 H -0.282 1.282 5 H -0.305 1.305 6 H -0.269 1.269 7 C -0.229 4.229 8 H 0.090 0.910 9 N -0.596 5.596 10 C 0.191 3.809 11 C -0.129 4.129 12 C 0.134 3.866 13 N -0.661 5.661 14 C 0.557 3.443 15 O -0.546 6.546 16 C 0.196 3.804 17 N -0.537 5.537 18 C 0.378 3.622 19 N -0.499 5.499 20 H 0.450 0.550 21 C 0.252 3.748 22 N -0.537 5.537 23 C 0.054 3.946 24 C -0.220 4.220 25 C -0.189 4.189 26 C -0.108 4.108 27 C -0.103 4.103 28 C -0.110 4.110 29 C 0.149 3.851 30 H 0.023 0.977 31 H 0.244 0.756 32 H 0.002 0.998 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.284 0.716 38 H 0.190 0.810 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -7.940 -13.160 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.254 4.254 3 Si 0.803 3.197 4 H -0.209 1.209 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.358 4.358 8 H 0.108 0.892 9 N -0.319 5.319 10 C 0.067 3.933 11 C -0.168 4.168 12 C 0.046 3.954 13 N -0.311 5.311 14 C 0.341 3.659 15 O -0.423 6.423 16 C 0.060 3.940 17 N -0.257 5.257 18 C 0.096 3.904 19 N -0.104 5.104 20 H 0.294 0.706 21 C -0.002 4.002 22 N -0.258 5.258 23 C -0.088 4.088 24 C -0.244 4.244 25 C -0.201 4.201 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.149 4.149 29 C 0.040 3.960 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.020 0.980 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.249 0.751 37 H 0.299 0.701 38 H 0.207 0.793 39 H 0.157 0.843 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.049 -7.972 -13.241 16.597 hybrid contribution -0.483 1.202 0.189 1.309 sum 5.565 -6.771 -13.052 15.721 Atomic orbital electron populations 1.70150 1.06489 1.25045 1.58473 1.25553 0.96254 1.00802 1.02758 0.85151 0.77578 0.79461 0.77553 1.20871 1.23193 1.19394 1.19397 0.90897 0.83020 1.42464 0.89206 1.43782 1.01726 1.00473 1.85959 1.21808 0.83556 0.90457 0.97497 1.22786 0.96994 0.96868 1.00150 1.21640 0.97079 0.95617 0.81038 1.45609 1.41203 1.36378 1.07915 1.18103 0.80848 0.82789 0.84189 1.90708 1.40683 1.30110 1.80821 1.21250 0.89580 0.89702 0.93453 1.67911 1.24568 1.14495 1.18727 1.26114 0.89348 0.94559 0.80370 1.41925 1.28418 1.24318 1.15776 0.70612 1.20688 0.95622 0.92994 0.90945 1.69537 1.11791 1.10178 1.34335 1.23006 0.99160 0.96556 0.90107 1.21583 1.01826 1.01717 0.99303 1.21046 1.03056 1.02496 0.93541 1.21765 0.96271 0.93961 1.02663 1.22655 0.94232 0.94217 1.03004 1.21867 0.96049 0.96040 1.00915 1.21060 0.94090 0.85260 0.95561 0.96016 0.94717 0.98015 0.95353 0.92518 0.89634 0.75076 0.70082 0.79303 0.84275 0.89771 0.91856 0.90730 0.89427 0.91795 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.74 10.55 21.65 0.23 -55.51 16 2 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 3 Si 0.97 43.38 29.55 68.60 2.03 45.41 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.23 -11.83 10.28 84.03 0.86 -10.97 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.60 -28.53 3.10 -667.11 -2.07 -30.60 16 10 C 0.19 9.48 5.34 87.23 0.47 9.94 16 11 C -0.13 -5.21 6.26 31.70 0.20 -5.01 16 12 C 0.13 4.79 0.42 4.32 0.00 4.79 16 13 N -0.66 -23.88 4.35 -421.80 -1.83 -25.71 16 14 C 0.56 20.51 7.15 87.02 0.62 21.14 16 15 O -0.55 -22.13 13.57 -3.56 -0.05 -22.18 16 16 C 0.20 6.33 6.83 41.98 0.29 6.62 16 17 N -0.54 -13.49 9.57 -187.68 -1.80 -15.28 16 18 C 0.38 5.03 12.24 180.48 2.21 7.24 16 19 N -0.50 -6.97 5.32 -191.95 -1.02 -7.99 16 20 H 0.45 2.17 8.93 -92.71 -0.83 1.34 16 21 C 0.25 6.58 8.71 136.29 1.19 7.76 16 22 N -0.54 -15.46 11.16 -188.43 -2.10 -17.57 16 23 C 0.05 1.54 11.70 83.93 0.98 2.52 16 24 C -0.22 -7.16 10.25 22.36 0.23 -6.93 16 25 C -0.19 -6.08 6.19 -19.88 -0.12 -6.21 16 26 C -0.11 -3.17 6.01 30.72 0.18 -2.99 16 27 C -0.10 -2.52 6.91 32.44 0.22 -2.30 16 28 C -0.11 -3.32 6.45 30.93 0.20 -3.12 16 29 C 0.15 5.69 2.61 46.46 0.12 5.81 16 30 H 0.02 0.87 7.99 -2.39 -0.02 0.86 16 31 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.00 0.09 7.98 -2.39 -0.02 0.07 16 33 H 0.03 1.60 7.05 -2.38 -0.02 1.58 16 34 H 0.06 2.41 7.17 -2.39 -0.02 2.39 16 35 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.41 15.26 7.18 -92.70 -0.67 14.59 16 37 H 0.28 -0.06 8.06 -2.91 -0.02 -0.08 16 38 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.14 4.71 7.38 -2.91 -0.02 4.69 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 1.99 6.84 -2.39 -0.02 1.97 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.06 1.97 7.37 -2.39 -0.02 1.95 16 45 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -78.59 362.21 1.06 -77.52 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.44 Total: 26.41 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 8.12 Total: 25.49 kcal Atomic # 7 Polarization: -144.06 SS G_CDS: -8.60 Total: -152.66 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -78.59 1.06 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991591598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.159 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds