Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00636 * 2 1 4 4 H 1.48507 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47251 * 119.99872 * 3 2 1 6 6 H 1.48499 * 109.47440 * 240.00545 * 3 2 1 7 7 C 1.38820 * 119.99748 * 180.27500 * 2 1 3 8 8 H 1.07996 * 119.99859 * 208.32145 * 7 2 1 9 9 N 1.36938 * 119.99647 * 28.32310 * 7 2 1 10 10 C 1.47365 * 125.58024 * 19.13720 * 9 7 2 11 11 C 1.55131 * 104.69213 * 155.20648 * 10 9 7 12 12 C 1.54915 * 101.65552 * 37.40255 * 11 10 9 13 13 N 1.46497 * 112.78003 * 86.25376 * 12 11 10 14 14 C 1.34779 * 119.99737 * 64.06997 * 13 12 11 15 15 O 1.21451 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.48629 * 120.00469 * 180.02562 * 14 13 12 17 17 N 1.33517 * 120.60089 * 359.71577 * 16 14 13 18 18 C 1.30806 * 122.65290 * 179.70734 * 17 16 14 19 19 N 1.34050 * 123.38229 * 0.61694 * 18 17 16 20 20 H 0.97001 * 120.21370 * 179.67138 * 19 18 17 21 21 C 1.36874 * 119.57331 * 359.69039 * 19 18 17 22 22 N 1.31626 * 135.96139 * 180.02562 * 21 19 18 23 23 C 1.33531 * 110.83571 * 180.02562 * 22 21 19 24 24 C 1.36076 * 110.92303 * 359.97438 * 23 22 21 25 25 C 1.39535 * 120.61099 * 179.97438 * 16 14 13 26 26 C 1.53588 * 109.09360 * 211.69718 * 12 11 10 27 27 C 1.54221 * 106.67651 * 113.07742 * 26 12 11 28 28 C 1.55957 * 104.71189 * 335.63605 * 27 26 12 29 29 C 1.46977 * 125.57711 * 199.44580 * 9 7 2 30 30 H 1.09000 * 111.81496 * 59.06458 * 29 9 7 31 31 H 0.97002 * 120.00520 * 185.69647 * 1 2 3 32 32 H 1.08997 * 110.37182 * 274.14352 * 10 9 7 33 33 H 1.09003 * 110.36958 * 36.47843 * 10 9 7 34 34 H 1.09004 * 111.18180 * 279.25632 * 11 10 9 35 35 H 1.08993 * 110.89418 * 155.42869 * 11 10 9 36 36 H 0.96997 * 120.00694 * 244.06182 * 13 12 11 37 37 H 1.08004 * 118.30859 * 180.28277 * 18 17 16 38 38 H 1.08001 * 124.53491 * 179.97438 * 23 22 21 39 39 H 1.08005 * 126.71951 * 180.02562 * 24 23 22 40 40 H 1.08999 * 110.01457 * 232.38552 * 26 12 11 41 41 H 1.08992 * 110.01552 * 353.72750 * 26 12 11 42 42 H 1.09005 * 110.49308 * 93.72499 * 27 26 12 43 43 H 1.08999 * 110.49228 * 216.25731 * 27 26 12 44 44 H 1.08996 * 110.35336 * 278.70806 * 28 27 26 45 45 H 1.08994 * 111.51264 * 155.19478 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2124 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 2.9932 -1.2604 0.4377 9 7 1.4483 -2.3144 -0.5738 10 6 0.3361 -2.3145 -1.5406 11 6 0.4997 -3.6408 -2.3283 12 6 0.9720 -4.6096 -1.2155 13 7 -0.1412 -5.2159 -0.4812 14 6 -1.0033 -6.0329 -1.1184 15 8 -0.8574 -6.2659 -2.3014 16 6 -2.1331 -6.6477 -0.3737 17 7 -2.3021 -6.4034 0.9280 18 6 -3.2848 -6.9183 1.6209 19 7 -4.2027 -7.7437 1.0982 20 1 -4.9102 -8.1031 1.6561 21 6 -4.1350 -8.0764 -0.2278 22 7 -4.8344 -8.8276 -1.0517 23 6 -4.3118 -8.7989 -2.2802 24 6 -3.2100 -8.0014 -2.3211 25 6 -3.0334 -7.4949 -1.0208 26 6 1.9060 -5.6630 -1.8296 27 6 3.3082 -5.4087 -1.2400 28 6 3.2978 -3.9045 -0.8280 29 6 1.8517 -3.7037 -0.3141 30 1 1.7558 -3.9629 0.7403 31 1 -0.4851 -0.8359 0.0834 32 1 -0.6205 -2.2958 -1.0184 33 1 0.4186 -1.4613 -2.2139 34 1 1.2550 -3.5450 -3.1084 35 1 -0.4530 -3.9637 -2.7480 36 1 -0.2579 -5.0296 0.4635 37 1 -3.3575 -6.6698 2.6695 38 1 -4.7104 -9.3366 -3.1278 39 1 -2.5926 -7.7967 -3.1833 40 1 1.5653 -6.6637 -1.5640 41 1 1.9307 -5.5530 -2.9136 42 1 3.4704 -6.0304 -0.3595 43 1 4.0772 -5.6002 -1.9884 44 1 3.4891 -3.2726 -1.6953 45 1 4.0190 -3.7020 -0.0363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991591600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 94.159578 kcal Electronic energy + Delta-G solvation = -30175.880176 eV Core-core repulsion = 26195.343648 eV Total energy + Delta-G solvation = -3980.536528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12006 -40.27149 -38.90325 -38.25803 -35.28657 -34.51765 -33.47977 -31.56370 -30.71496 -29.86093 -29.21422 -26.74318 -26.53759 -25.22159 -23.79536 -23.78449 -21.87063 -21.09771 -20.18357 -20.01200 -19.06414 -18.52197 -18.19419 -17.44093 -17.13163 -16.48911 -16.05013 -15.75252 -15.09232 -15.05247 -14.49351 -14.14058 -13.76536 -13.64343 -13.51905 -13.32168 -13.12974 -13.02083 -12.64425 -12.51076 -12.05019 -11.79057 -11.69572 -11.52227 -11.02321 -10.83475 -10.70999 -10.62902 -10.46398 -10.32940 -10.19313 -9.99885 -9.96721 -9.92267 -9.66014 -9.50207 -8.86939 -8.74367 -8.37819 -8.09152 -6.93944 -6.09176 -3.15950 -0.50054 1.14325 1.90184 2.52631 2.93655 3.18857 3.49207 3.50610 3.51562 3.54436 3.71528 3.90148 4.28583 4.54030 4.58291 4.69497 4.78148 5.03398 5.12600 5.20609 5.29691 5.33255 5.57190 5.64152 5.73781 5.78006 5.81956 5.99302 6.02139 6.06847 6.11283 6.16205 6.19890 6.31102 6.34044 6.36502 6.43998 6.55140 6.68078 6.79453 6.82420 6.92984 7.05161 7.10003 7.17636 7.67111 7.70722 7.82895 8.23434 8.49519 9.01594 9.81586 10.37637 11.22218 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.003205 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.980021 B = 8734.864894 C = 9555.825976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.024 4.024 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.133 4.133 12 C 0.159 3.841 13 N -0.680 5.680 14 C 0.564 3.436 15 O -0.510 6.510 16 C 0.201 3.799 17 N -0.515 5.515 18 C 0.353 3.647 19 N -0.520 5.520 20 H 0.428 0.572 21 C 0.252 3.748 22 N -0.519 5.519 23 C 0.058 3.942 24 C -0.192 4.192 25 C -0.154 4.154 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.125 4.125 29 C 0.161 3.839 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.024 0.976 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.411 0.589 37 H 0.222 0.778 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 -16.865 3.179 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.892 3.108 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.020 3.980 11 C -0.173 4.173 12 C 0.073 3.927 13 N -0.330 5.330 14 C 0.347 3.653 15 O -0.384 6.384 16 C 0.066 3.934 17 N -0.236 5.236 18 C 0.070 3.930 19 N -0.124 5.124 20 H 0.267 0.733 21 C -0.002 4.002 22 N -0.240 5.240 23 C -0.084 4.084 24 C -0.216 4.216 25 C -0.166 4.166 26 C -0.149 4.149 27 C -0.163 4.163 28 C -0.165 4.165 29 C 0.053 3.947 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.248 0.752 37 H 0.238 0.762 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.412 -15.292 2.761 16.455 hybrid contribution -0.183 -1.780 0.383 1.830 sum -5.595 -17.072 3.144 18.239 Atomic orbital electron populations 1.70778 1.06719 1.30192 1.47677 1.25732 0.96386 1.01105 0.99358 0.83556 0.74849 0.76186 0.76162 1.21201 1.22071 1.22109 1.19672 0.99534 0.88102 1.38956 0.91830 1.44576 1.39917 0.99805 1.47539 1.21595 0.91316 0.94321 0.90808 1.23195 1.01453 0.96039 0.96575 1.21698 0.85460 0.92354 0.93219 1.45800 1.27407 1.45687 1.14074 1.17749 0.81310 0.79831 0.86427 1.90771 1.72727 1.60800 1.14143 1.21430 0.92887 0.90331 0.88713 1.67888 1.21118 1.26676 1.07869 1.24836 0.83147 0.85284 0.99772 1.41833 1.26037 1.36528 1.07959 0.73342 1.20542 0.95819 0.99122 0.84702 1.69519 1.30180 1.22668 1.01625 1.22670 0.94002 0.98388 0.93339 1.21607 1.01377 1.02749 0.95894 1.20864 0.96922 1.01950 0.96913 1.22253 0.94254 0.97904 1.00504 1.22559 0.96266 0.97596 0.99861 1.23066 0.98072 0.94236 1.01173 1.21811 0.91781 0.85812 0.95248 0.93502 0.92064 0.95806 0.93125 0.90616 0.91143 0.75243 0.76187 0.81587 0.82848 0.92097 0.90913 0.92350 0.92030 0.90840 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.09 12.99 55.49 0.72 -26.37 16 2 C -0.02 -0.66 5.08 -17.43 -0.09 -0.74 16 3 Si 1.06 24.99 30.00 -169.99 -5.10 19.89 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.33 -9.07 9.71 -15.06 -0.15 -9.21 16 8 H 0.06 1.72 7.97 -52.49 -0.42 1.30 16 9 N -0.59 -14.30 2.91 -160.96 -0.47 -14.77 16 10 C 0.14 3.38 5.36 -2.44 -0.01 3.36 16 11 C -0.13 -2.58 5.80 -24.59 -0.14 -2.73 16 12 C 0.16 2.78 0.74 -129.37 -0.10 2.68 16 13 N -0.68 -10.96 5.24 -46.03 -0.24 -11.20 16 14 C 0.56 9.16 7.00 -11.97 -0.08 9.07 16 15 O -0.51 -9.23 13.29 5.41 0.07 -9.16 16 16 C 0.20 2.85 6.83 -82.36 -0.56 2.28 16 17 N -0.51 -5.70 9.58 -10.67 -0.10 -5.80 16 18 C 0.35 2.26 12.24 -91.02 -1.11 1.15 16 19 N -0.52 -3.60 5.32 -12.02 -0.06 -3.66 16 20 H 0.43 1.25 8.93 -40.82 -0.36 0.89 16 21 C 0.25 3.09 8.71 -154.20 -1.34 1.74 16 22 N -0.52 -7.07 11.16 -10.91 -0.12 -7.20 16 23 C 0.06 0.76 11.70 -17.59 -0.21 0.55 16 24 C -0.19 -2.76 10.25 -39.45 -0.40 -3.17 16 25 C -0.15 -2.22 6.19 -104.65 -0.65 -2.87 16 26 C -0.11 -1.73 5.24 -25.79 -0.14 -1.86 16 27 C -0.12 -1.80 6.85 -24.51 -0.17 -1.97 16 28 C -0.13 -2.21 6.33 -24.21 -0.15 -2.36 16 29 C 0.16 3.17 3.61 -65.60 -0.24 2.94 16 30 H 0.05 0.94 7.97 -51.93 -0.41 0.53 16 31 H 0.27 8.00 6.19 -40.82 -0.25 7.75 16 32 H 0.02 0.60 6.83 -51.93 -0.35 0.25 16 33 H 0.05 1.30 8.04 -51.93 -0.42 0.88 16 34 H 0.08 1.42 7.62 -51.93 -0.40 1.03 16 35 H 0.07 1.38 6.84 -51.93 -0.36 1.02 16 36 H 0.41 6.32 7.88 -40.82 -0.32 6.00 16 37 H 0.22 0.15 8.06 -52.48 -0.42 -0.28 16 38 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.15 2.22 7.38 -52.48 -0.39 1.83 16 40 H 0.06 0.95 7.40 -51.93 -0.38 0.56 16 41 H 0.07 1.15 7.37 -51.93 -0.38 0.77 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -35.63 362.51 -11.16 -46.79 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.78 Total: 7.15 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -5.54 Total: -1.14 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -0.28 Total: -69.00 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.10 Total: 19.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.63 -11.16 -46.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991591600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.954 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds