Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00636 * 2 1 4 4 H 1.48507 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47251 * 119.99872 * 3 2 1 6 6 H 1.48499 * 109.47440 * 240.00545 * 3 2 1 7 7 C 1.38820 * 119.99748 * 180.27500 * 2 1 3 8 8 H 1.07996 * 119.99859 * 208.32145 * 7 2 1 9 9 N 1.36938 * 119.99647 * 28.32310 * 7 2 1 10 10 C 1.47365 * 125.58024 * 19.13720 * 9 7 2 11 11 C 1.55131 * 104.69213 * 155.20648 * 10 9 7 12 12 C 1.54915 * 101.65552 * 37.40255 * 11 10 9 13 13 N 1.46497 * 112.78003 * 86.25376 * 12 11 10 14 14 C 1.34779 * 119.99737 * 64.06997 * 13 12 11 15 15 O 1.21451 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.48629 * 120.00469 * 180.02562 * 14 13 12 17 17 N 1.33517 * 120.60089 * 359.71577 * 16 14 13 18 18 C 1.30806 * 122.65290 * 179.70734 * 17 16 14 19 19 N 1.34050 * 123.38229 * 0.61694 * 18 17 16 20 20 H 0.97001 * 120.21370 * 179.67138 * 19 18 17 21 21 C 1.36874 * 119.57331 * 359.69039 * 19 18 17 22 22 N 1.31626 * 135.96139 * 180.02562 * 21 19 18 23 23 C 1.33531 * 110.83571 * 180.02562 * 22 21 19 24 24 C 1.36076 * 110.92303 * 359.97438 * 23 22 21 25 25 C 1.39535 * 120.61099 * 179.97438 * 16 14 13 26 26 C 1.53588 * 109.09360 * 211.69718 * 12 11 10 27 27 C 1.54221 * 106.67651 * 113.07742 * 26 12 11 28 28 C 1.55957 * 104.71189 * 335.63605 * 27 26 12 29 29 C 1.46977 * 125.57711 * 199.44580 * 9 7 2 30 30 H 1.09000 * 111.81496 * 59.06458 * 29 9 7 31 31 H 0.97002 * 120.00520 * 185.69647 * 1 2 3 32 32 H 1.08997 * 110.37182 * 274.14352 * 10 9 7 33 33 H 1.09003 * 110.36958 * 36.47843 * 10 9 7 34 34 H 1.09004 * 111.18180 * 279.25632 * 11 10 9 35 35 H 1.08993 * 110.89418 * 155.42869 * 11 10 9 36 36 H 0.96997 * 120.00694 * 244.06182 * 13 12 11 37 37 H 1.08004 * 118.30859 * 180.28277 * 18 17 16 38 38 H 1.08001 * 124.53491 * 179.97438 * 23 22 21 39 39 H 1.08005 * 126.71951 * 180.02562 * 24 23 22 40 40 H 1.08999 * 110.01457 * 232.38552 * 26 12 11 41 41 H 1.08992 * 110.01552 * 353.72750 * 26 12 11 42 42 H 1.09005 * 110.49308 * 93.72499 * 27 26 12 43 43 H 1.08999 * 110.49228 * 216.25731 * 27 26 12 44 44 H 1.08996 * 110.35336 * 278.70806 * 28 27 26 45 45 H 1.08994 * 111.51264 * 155.19478 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2124 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 2.9932 -1.2604 0.4377 9 7 1.4483 -2.3144 -0.5738 10 6 0.3361 -2.3145 -1.5406 11 6 0.4997 -3.6408 -2.3283 12 6 0.9720 -4.6096 -1.2155 13 7 -0.1412 -5.2159 -0.4812 14 6 -1.0033 -6.0329 -1.1184 15 8 -0.8574 -6.2659 -2.3014 16 6 -2.1331 -6.6477 -0.3737 17 7 -2.3021 -6.4034 0.9280 18 6 -3.2848 -6.9183 1.6209 19 7 -4.2027 -7.7437 1.0982 20 1 -4.9102 -8.1031 1.6561 21 6 -4.1350 -8.0764 -0.2278 22 7 -4.8344 -8.8276 -1.0517 23 6 -4.3118 -8.7989 -2.2802 24 6 -3.2100 -8.0014 -2.3211 25 6 -3.0334 -7.4949 -1.0208 26 6 1.9060 -5.6630 -1.8296 27 6 3.3082 -5.4087 -1.2400 28 6 3.2978 -3.9045 -0.8280 29 6 1.8517 -3.7037 -0.3141 30 1 1.7558 -3.9629 0.7403 31 1 -0.4851 -0.8359 0.0834 32 1 -0.6205 -2.2958 -1.0184 33 1 0.4186 -1.4613 -2.2139 34 1 1.2550 -3.5450 -3.1084 35 1 -0.4530 -3.9637 -2.7480 36 1 -0.2579 -5.0296 0.4635 37 1 -3.3575 -6.6698 2.6695 38 1 -4.7104 -9.3366 -3.1278 39 1 -2.5926 -7.7967 -3.1833 40 1 1.5653 -6.6637 -1.5640 41 1 1.9307 -5.5530 -2.9136 42 1 3.4704 -6.0304 -0.3595 43 1 4.0772 -5.6002 -1.9884 44 1 3.4891 -3.2726 -1.6953 45 1 4.0190 -3.7020 -0.0363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991591600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = 70.623392 kcal Electronic energy + Delta-G solvation = -30176.900782 eV Core-core repulsion = 26195.343648 eV Total energy + Delta-G solvation = -3981.557133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.00192 -41.67635 -39.83455 -39.59661 -36.30710 -36.16223 -34.79787 -33.42451 -31.74820 -31.41898 -30.17470 -28.27736 -28.05755 -26.34987 -25.70498 -24.58419 -23.12157 -22.22531 -21.74828 -21.34431 -20.40707 -19.61752 -19.30314 -19.20724 -18.13463 -17.51182 -17.08819 -16.98157 -16.66644 -16.19598 -15.89735 -15.56992 -15.32647 -15.11094 -15.02574 -14.67228 -14.31196 -14.14825 -14.02196 -13.59025 -13.53513 -13.21386 -13.18682 -12.71477 -12.67201 -12.42649 -12.26197 -12.03085 -11.94126 -11.86967 -11.74483 -11.67357 -11.52409 -11.33248 -11.13189 -10.78007 -10.45200 -10.15740 -9.76354 -9.05631 -8.97041 -8.26639 -5.30324 -1.42276 0.34433 1.22731 1.38562 1.59317 1.67496 1.74770 1.85447 2.21968 2.49383 2.64878 2.70111 2.99042 3.20702 3.27317 3.46342 3.48603 3.75005 3.78233 3.85571 4.00247 4.20876 4.23321 4.25493 4.36175 4.39073 4.44500 4.53870 4.69265 4.76439 4.79006 4.85455 4.93193 5.02889 5.06806 5.13592 5.15262 5.24186 5.28563 5.34688 5.50122 5.53877 5.58740 5.76742 5.89430 6.23729 6.35056 6.51660 6.77026 6.92126 6.97011 7.73804 8.33879 9.03784 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.003205 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.980021 B = 8734.864894 C = 9555.825976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.078 4.078 3 Si 1.112 2.888 4 H -0.296 1.296 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.155 3.845 11 C -0.121 4.121 12 C 0.168 3.832 13 N -0.678 5.678 14 C 0.561 3.439 15 O -0.534 6.534 16 C 0.196 3.804 17 N -0.538 5.538 18 C 0.381 3.619 19 N -0.499 5.499 20 H 0.451 0.549 21 C 0.254 3.746 22 N -0.537 5.537 23 C 0.055 3.945 24 C -0.221 4.221 25 C -0.188 4.188 26 C -0.104 4.104 27 C -0.109 4.109 28 C -0.121 4.121 29 C 0.154 3.846 30 H 0.047 0.953 31 H 0.253 0.747 32 H 0.000 1.000 33 H 0.017 0.983 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.415 0.585 37 H 0.288 0.712 38 H 0.189 0.811 39 H 0.140 0.860 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 -18.362 5.192 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.275 4.275 3 Si 0.937 3.063 4 H -0.222 1.222 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.030 3.970 11 C -0.160 4.160 12 C 0.081 3.919 13 N -0.328 5.328 14 C 0.345 3.655 15 O -0.410 6.410 16 C 0.060 3.940 17 N -0.258 5.258 18 C 0.099 3.901 19 N -0.104 5.104 20 H 0.295 0.705 21 C -0.001 4.001 22 N -0.259 5.259 23 C -0.087 4.087 24 C -0.245 4.245 25 C -0.201 4.201 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.160 4.160 29 C 0.048 3.952 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.035 0.965 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.252 0.748 37 H 0.303 0.697 38 H 0.206 0.794 39 H 0.158 0.842 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.849 -16.846 4.826 18.182 hybrid contribution -0.401 -1.330 -0.117 1.394 sum -5.250 -18.176 4.709 19.496 Atomic orbital electron populations 1.70894 1.07754 1.29284 1.50791 1.27041 0.96457 1.04458 0.99495 0.82886 0.73864 0.72252 0.77286 1.22248 1.19766 1.21033 1.19925 0.99379 0.89233 1.37745 0.91791 1.44741 1.39761 1.01237 1.47631 1.21364 0.90242 0.95098 0.90341 1.23062 1.01588 0.94392 0.96956 1.21560 0.85900 0.92440 0.91990 1.45730 1.27292 1.45680 1.14135 1.18117 0.81633 0.79367 0.86341 1.90747 1.73421 1.61577 1.15289 1.21104 0.92242 0.90650 0.90030 1.67881 1.23381 1.28018 1.06530 1.26162 0.80540 0.82189 1.01246 1.41945 1.26558 1.35701 1.06202 0.70515 1.20685 0.94710 0.98297 0.86394 1.69539 1.30700 1.23603 1.02015 1.23016 0.93513 0.98080 0.94068 1.21601 1.02412 1.04451 0.96047 1.21043 0.98293 1.03152 0.97568 1.22204 0.94473 0.97214 1.00382 1.22495 0.95892 0.95122 1.01187 1.22939 0.96208 0.96433 1.00462 1.22037 0.93665 0.83780 0.95751 0.93507 0.93660 0.98264 0.96493 0.89928 0.91532 0.74805 0.69709 0.79403 0.84221 0.91609 0.90989 0.90432 0.89743 0.92619 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 12.99 21.65 0.28 -57.60 16 2 C -0.08 -4.44 5.08 84.86 0.43 -4.01 16 3 Si 1.11 50.87 30.00 68.60 2.06 52.92 16 4 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.33 -18.31 9.71 84.04 0.82 -17.50 16 8 H 0.06 3.44 7.97 -2.91 -0.02 3.42 16 9 N -0.61 -29.93 2.91 -663.16 -1.93 -31.86 16 10 C 0.16 7.58 5.36 86.94 0.47 8.04 16 11 C -0.12 -4.80 5.80 31.98 0.19 -4.61 16 12 C 0.17 5.83 0.74 5.19 0.00 5.83 16 13 N -0.68 -21.82 5.24 -417.87 -2.19 -24.01 16 14 C 0.56 18.42 7.00 87.02 0.61 19.02 16 15 O -0.53 -19.85 13.29 -3.56 -0.05 -19.90 16 16 C 0.20 5.47 6.83 41.98 0.29 5.76 16 17 N -0.54 -10.76 9.58 -187.68 -1.80 -12.55 16 18 C 0.38 3.33 12.24 180.49 2.21 5.54 16 19 N -0.50 -5.20 5.32 -191.95 -1.02 -6.22 16 20 H 0.45 0.71 8.93 -92.71 -0.83 -0.11 16 21 C 0.25 5.85 8.71 136.28 1.19 7.03 16 22 N -0.54 -14.18 11.16 -188.44 -2.10 -16.29 16 23 C 0.06 1.46 11.70 83.93 0.98 2.44 16 24 C -0.22 -6.61 10.25 22.36 0.23 -6.38 16 25 C -0.19 -5.43 6.19 -19.88 -0.12 -5.55 16 26 C -0.10 -3.09 5.24 31.21 0.16 -2.93 16 27 C -0.11 -2.84 6.85 32.03 0.22 -2.62 16 28 C -0.12 -4.07 6.33 32.23 0.20 -3.87 16 29 C 0.15 6.01 3.61 46.24 0.17 6.18 16 30 H 0.05 1.85 7.97 -2.39 -0.02 1.83 16 31 H 0.25 15.82 6.19 -92.71 -0.57 15.25 16 32 H 0.00 -0.02 6.83 -2.39 -0.02 -0.04 16 33 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 34 H 0.08 3.15 7.62 -2.38 -0.02 3.13 16 35 H 0.07 2.70 6.84 -2.39 -0.02 2.68 16 36 H 0.41 12.62 7.88 -92.71 -0.73 11.89 16 37 H 0.29 -1.50 8.06 -2.91 -0.02 -1.52 16 38 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.14 4.38 7.38 -2.91 -0.02 4.36 16 40 H 0.07 1.93 7.40 -2.39 -0.02 1.91 16 41 H 0.07 2.17 7.37 -2.39 -0.02 2.15 16 42 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -82.33 362.51 0.99 -81.34 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.31 Total: 21.77 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 8.04 Total: 12.38 kcal Atomic # 7 Polarization: -139.77 SS G_CDS: -8.76 Total: -148.52 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.06 Total: 52.92 kcal Total: -82.33 0.99 -81.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991591600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.968 kcal (2) G-P(sol) polarization free energy of solvation -82.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds