Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00212 * 2 1 4 4 H 1.48497 * 109.46825 * 269.99868 * 3 2 1 5 5 H 1.48504 * 109.46954 * 29.99309 * 3 2 1 6 6 H 1.48500 * 109.47026 * 149.99754 * 3 2 1 7 7 C 1.38806 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.49293 * 127.10540 * 359.97438 * 9 7 2 11 11 C 1.56227 * 106.51387 * 188.65974 * 10 9 7 12 12 C 1.52136 * 100.81166 * 23.44400 * 11 10 9 13 13 N 1.46506 * 111.09843 * 73.97950 * 12 11 10 14 14 C 1.34781 * 119.99370 * 61.01335 * 13 12 11 15 15 O 1.21588 * 120.00358 * 359.73118 * 14 13 12 16 16 C 1.47586 * 119.99580 * 180.02562 * 14 13 12 17 17 C 1.41519 * 120.56760 * 359.72696 * 16 14 13 18 18 N 1.30900 * 120.17073 * 179.97438 * 17 16 14 19 19 C 1.34261 * 121.26534 * 359.97438 * 18 17 16 20 20 N 1.32429 * 131.62732 * 180.02562 * 19 18 17 21 21 C 1.33700 * 109.32336 * 179.97438 * 20 19 18 22 22 C 1.34902 * 108.65461 * 0.02562 * 21 20 19 23 23 N 1.37008 * 107.06138 * 0.02562 * 22 21 20 24 24 C 1.35969 * 132.55324 * 180.33063 * 23 22 21 25 25 C 1.51235 * 122.09658 * 208.15962 * 12 11 10 26 26 C 1.56580 * 104.17694 * 141.04027 * 25 12 11 27 27 C 1.56279 * 106.07314 * 353.43121 * 26 25 12 28 28 C 1.42703 * 127.10571 * 179.97438 * 9 7 2 29 29 H 1.08998 * 108.15975 * 256.50893 * 28 9 7 30 30 H 0.97008 * 119.99427 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.05162 * 69.39156 * 10 9 7 32 32 H 1.09004 * 110.04637 * 307.92007 * 10 9 7 33 33 H 1.09006 * 111.15055 * 265.55798 * 11 10 9 34 34 H 1.08999 * 111.15293 * 141.33317 * 11 10 9 35 35 H 0.96990 * 120.00200 * 241.02182 * 13 12 11 36 36 H 1.08001 * 119.91310 * 0.02562 * 17 16 14 37 37 H 1.08005 * 125.67284 * 180.02562 * 21 20 19 38 38 H 1.08004 * 126.46959 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.58235 * 359.91370 * 24 23 22 40 40 H 1.09003 * 110.40995 * 260.69726 * 25 12 11 41 41 H 1.09002 * 110.40304 * 23.12410 * 25 12 11 42 42 H 1.09002 * 110.45006 * 234.07480 * 26 25 12 43 43 H 1.09007 * 109.79499 * 112.43615 * 26 25 12 44 44 H 1.09004 * 110.96783 * 217.20202 * 27 26 25 45 45 H 1.08999 * 110.96933 * 93.43607 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1560 -2.5726 0.0005 11 6 -0.4135 -4.0969 0.2261 12 6 0.8804 -4.5063 0.9137 13 7 0.9156 -4.0290 2.2984 14 6 -0.0181 -4.4431 3.1777 15 8 -0.8924 -5.2089 2.8207 16 6 0.0170 -3.9619 4.5725 17 6 1.0289 -3.0701 5.0009 18 7 1.0523 -2.6478 6.2397 19 6 0.1273 -3.0439 7.1285 20 7 -0.0442 -2.7521 8.4088 21 6 -1.1196 -3.3992 8.8698 22 6 -1.6514 -4.1237 7.8638 23 7 -0.8719 -3.9086 6.7578 24 6 -0.9400 -4.3707 5.4808 25 6 1.4384 -5.9079 0.8073 26 6 2.9851 -5.6968 0.6859 27 6 3.2027 -4.1543 0.5604 28 6 1.8806 -3.7026 0.0005 29 1 1.7902 -4.1096 -1.0066 30 1 -0.4850 0.8402 -0.0004 31 1 -0.5714 -2.2612 -0.9579 32 1 -0.6046 -1.9944 0.8083 33 1 -0.5371 -4.6195 -0.7226 34 1 -1.2729 -4.2586 0.8768 35 1 1.6107 -3.4150 2.5822 36 1 1.7833 -2.7365 4.3037 37 1 -1.4994 -3.3500 9.8797 38 1 -2.5259 -4.7550 7.9199 39 1 -1.7275 -5.0468 5.1824 40 1 1.1851 -6.4863 1.6958 41 1 1.0601 -6.4005 -0.0885 42 1 3.3704 -6.2037 -0.1987 43 1 3.4806 -6.0745 1.5804 44 1 4.0159 -3.9300 -0.1300 45 1 3.3867 -3.7056 1.5366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991845488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 123.533572 kcal Electronic energy + Delta-G solvation = -30486.345206 eV Core-core repulsion = 26507.082430 eV Total energy + Delta-G solvation = -3979.262776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.20315 -40.70970 -38.89966 -37.58256 -34.82935 -34.50847 -33.30446 -31.99067 -31.15256 -29.80972 -29.43414 -27.03638 -26.06639 -24.95686 -24.26253 -24.02450 -22.09773 -21.37243 -20.56775 -19.73860 -19.26016 -18.45971 -17.96343 -17.10605 -16.56177 -16.53629 -15.92703 -15.64364 -14.96233 -14.66067 -14.53464 -14.36569 -14.27898 -13.98573 -13.91665 -13.65067 -13.55247 -12.67630 -12.52668 -12.40366 -12.07983 -11.99848 -11.50168 -11.44305 -11.06761 -10.99841 -10.92325 -10.81140 -10.59518 -10.34596 -10.25503 -10.08886 -10.03860 -9.78796 -9.73691 -9.37466 -9.28490 -8.73478 -8.67608 -8.40912 -6.94447 -5.81354 -3.16724 0.15304 0.63514 2.03732 2.33860 3.02155 3.26946 3.35286 3.36562 3.40986 3.43173 3.55949 4.08445 4.19282 4.38304 4.50500 4.52537 4.62245 4.98605 5.02900 5.10823 5.13568 5.20392 5.40887 5.41504 5.50972 5.61398 5.71381 5.83067 5.84816 5.87252 6.04183 6.13368 6.18956 6.20615 6.25421 6.25987 6.31507 6.40292 6.56432 6.73709 6.78294 6.99682 7.27825 7.44098 7.52987 7.69980 7.71064 7.75453 8.12124 8.35011 9.06143 9.72960 10.40711 11.30529 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.004103 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.180696 B = 6822.457090 C = 8346.642718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.001 4.001 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.583 5.583 10 C 0.178 3.822 11 C -0.142 4.142 12 C 0.130 3.870 13 N -0.676 5.676 14 C 0.576 3.424 15 O -0.541 6.541 16 C -0.214 4.214 17 C 0.205 3.795 18 N -0.436 5.436 19 C 0.386 3.614 20 N -0.474 5.474 21 C 0.049 3.951 22 C -0.097 4.097 23 N -0.401 5.401 24 C 0.180 3.820 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.117 4.117 28 C 0.160 3.840 29 H 0.024 0.976 30 H 0.253 0.747 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.402 0.598 36 H 0.187 0.813 37 H 0.190 0.810 38 H 0.190 0.810 39 H 0.190 0.810 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 -13.005 9.342 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.198 4.198 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.181 4.181 12 C 0.043 3.957 13 N -0.325 5.325 14 C 0.360 3.640 15 O -0.420 6.420 16 C -0.223 4.223 17 C 0.016 3.984 18 N -0.147 5.147 19 C 0.038 3.962 20 N -0.196 5.196 21 C -0.102 4.102 22 C -0.227 4.227 23 N -0.078 5.078 24 C 0.044 3.956 25 C -0.150 4.150 26 C -0.156 4.156 27 C -0.155 4.155 28 C 0.050 3.950 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.204 0.796 37 H 0.207 0.793 38 H 0.207 0.793 39 H 0.207 0.793 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.649 -12.152 10.086 15.806 hybrid contribution -0.483 0.262 -0.676 0.872 sum -1.133 -11.890 9.410 15.206 Atomic orbital electron populations 1.69917 1.04945 1.25251 1.56214 1.24785 0.95591 0.97664 1.01780 0.86190 0.78721 0.83648 0.77615 1.21602 1.21709 1.20540 1.18996 0.90286 0.82175 1.44810 0.90210 1.43663 1.01682 0.99172 1.86136 1.22020 0.83187 0.88592 1.00809 1.22844 0.96567 0.99412 0.99271 1.21654 0.99452 0.93897 0.80744 1.45537 1.29779 1.47263 1.09925 1.17304 0.82249 0.81126 0.83318 1.90758 1.36070 1.36347 1.78826 1.20845 0.99531 1.05131 0.96768 1.23521 0.94936 0.88903 0.90993 1.67846 1.21258 1.23549 1.02053 1.22221 0.88241 0.92830 0.92883 1.70734 1.19161 1.25611 1.04050 1.22666 0.92614 0.95056 0.99876 1.22739 1.02752 1.11626 0.85549 1.44042 1.22973 1.32189 1.08633 1.22559 0.97949 0.94378 0.80667 1.22054 0.95077 0.95846 1.02067 1.22978 0.95523 0.95901 1.01172 1.21869 0.98038 0.94456 1.01162 1.20829 0.91415 0.87463 0.95340 0.95855 0.93637 0.94650 0.91767 0.91547 0.90452 0.76160 0.79644 0.79311 0.79337 0.79292 0.91496 0.90945 0.91766 0.92175 0.91498 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.53 10.55 55.49 0.59 -24.95 16 2 C 0.00 -0.03 5.49 -17.43 -0.10 -0.12 16 3 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -5.90 10.29 -15.06 -0.15 -6.06 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.58 -13.17 3.16 -162.69 -0.51 -13.69 16 10 C 0.18 4.01 5.33 -0.76 0.00 4.01 16 11 C -0.14 -2.60 6.10 -25.44 -0.16 -2.76 16 12 C 0.13 2.10 0.42 -130.70 -0.06 2.05 16 13 N -0.68 -10.30 4.44 -47.58 -0.21 -10.51 16 14 C 0.58 8.61 7.17 -12.44 -0.09 8.52 16 15 O -0.54 -9.11 14.49 5.29 0.08 -9.03 16 16 C -0.21 -2.82 5.89 -104.87 -0.62 -3.44 16 17 C 0.21 2.76 10.78 -16.70 -0.18 2.58 16 18 N -0.44 -6.87 10.45 -13.37 -0.14 -7.01 16 19 C 0.39 6.00 8.91 -322.24 -2.87 3.13 16 20 N -0.47 -7.25 11.31 -14.41 -0.16 -7.41 16 21 C 0.05 0.53 11.82 -17.92 -0.21 0.31 16 22 C -0.10 -0.94 11.76 -16.42 -0.19 -1.13 16 23 N -0.40 -5.03 2.94 -63.77 -0.19 -5.22 16 24 C 0.18 2.12 10.65 -15.76 -0.17 1.95 16 25 C -0.11 -1.52 6.25 -25.69 -0.16 -1.68 16 26 C -0.12 -1.43 6.95 -23.04 -0.16 -1.59 16 27 C -0.12 -1.71 6.46 -26.22 -0.17 -1.88 16 28 C 0.16 2.90 2.65 -68.73 -0.18 2.72 16 29 H 0.02 0.46 7.98 -51.93 -0.41 0.04 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.04 0.89 7.98 -51.93 -0.41 0.47 16 32 H 0.06 1.64 7.05 -51.93 -0.37 1.27 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.46 6.26 -51.93 -0.33 1.14 16 35 H 0.40 5.91 5.64 -40.82 -0.23 5.68 16 36 H 0.19 2.14 6.48 -52.49 -0.34 1.80 16 37 H 0.19 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.19 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.19 1.79 7.68 -52.49 -0.40 1.38 16 40 H 0.07 0.92 7.74 -51.93 -0.40 0.52 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.93 7.17 -51.93 -0.37 0.56 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -32.37 362.08 -11.36 -43.73 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.77 Total: 5.91 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -5.47 Total: 6.62 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.63 Total: -68.78 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.37 -11.36 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991845488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.268 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds