Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48504 * 109.46900 * 274.96385 * 3 2 1 5 5 H 1.48499 * 109.47059 * 34.96009 * 3 2 1 6 6 H 1.48497 * 109.47212 * 154.96495 * 3 2 1 7 7 C 1.38812 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99914 * 185.70576 * 7 2 1 9 9 N 1.36934 * 119.99992 * 5.70664 * 7 2 1 10 10 C 1.49297 * 127.10459 * 352.78127 * 9 7 2 11 11 C 1.56223 * 106.51102 * 188.64710 * 10 9 7 12 12 C 1.52132 * 100.80960 * 23.45045 * 11 10 9 13 13 N 1.46495 * 111.08446 * 73.95163 * 12 11 10 14 14 C 1.34780 * 120.00230 * 71.69909 * 13 12 11 15 15 O 1.21558 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.47795 * 120.00209 * 179.97438 * 14 13 12 17 17 N 1.32299 * 120.58866 * 0.02562 * 16 14 13 18 18 C 1.32691 * 121.18649 * 179.97438 * 17 16 14 19 19 C 1.35485 * 122.11316 * 0.02562 * 18 17 16 20 20 N 1.36217 * 120.52587 * 359.97438 * 19 18 17 21 21 C 1.36161 * 133.92977 * 179.97438 * 20 19 18 22 22 C 1.35342 * 107.14252 * 179.26457 * 21 20 19 23 23 N 1.33568 * 108.61134 * 0.64337 * 22 21 20 24 24 C 1.31853 * 109.13941 * 359.42405 * 23 22 21 25 25 C 1.51376 * 122.14447 * 208.73684 * 12 11 10 26 26 C 1.55694 * 104.53377 * 141.24845 * 25 12 11 27 27 C 1.56276 * 105.99664 * 352.81189 * 26 25 12 28 28 C 1.42708 * 127.10396 * 172.76496 * 9 7 2 29 29 H 1.09007 * 108.17607 * 255.89480 * 28 9 7 30 30 H 0.97002 * 120.00374 * 359.97438 * 1 2 3 31 31 H 1.09007 * 110.05212 * 307.90951 * 10 9 7 32 32 H 1.09002 * 110.04852 * 69.38519 * 10 9 7 33 33 H 1.09004 * 111.15755 * 141.33689 * 11 10 9 34 34 H 1.09008 * 111.15329 * 265.56499 * 11 10 9 35 35 H 0.97000 * 120.00214 * 251.69974 * 13 12 11 36 36 H 1.07999 * 118.94636 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.73403 * 179.97438 * 19 18 17 38 38 H 1.07999 * 126.42767 * 359.97438 * 21 20 19 39 39 H 1.08003 * 125.69584 * 180.08969 * 22 21 20 40 40 H 1.09002 * 110.41804 * 22.50545 * 25 12 11 41 41 H 1.08997 * 110.47116 * 260.02298 * 25 12 11 42 42 H 1.08999 * 110.15790 * 233.66037 * 26 25 12 43 43 H 1.08999 * 110.15720 * 111.96379 * 26 25 12 44 44 H 1.08995 * 110.97286 * 93.82954 * 27 26 25 45 45 H 1.09004 * 110.96992 * 217.59263 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3927 2.1070 -1.3949 5 1 1.5039 2.6201 0.8022 6 1 3.5962 1.4123 0.5925 7 6 2.0103 -1.2021 -0.0005 8 1 3.0863 -1.2044 0.0925 9 7 1.3308 -2.3850 -0.1190 10 6 -0.1496 -2.5785 -0.1065 11 6 -0.3954 -4.1202 -0.0491 12 6 0.9157 -4.5957 0.5587 13 7 0.9808 -4.2769 1.9870 14 6 0.2132 -4.9537 2.8642 15 8 -0.5326 -5.8289 2.4702 16 6 0.2793 -4.6324 4.3053 17 7 1.0873 -3.6825 4.7470 18 6 1.1557 -3.3840 6.0381 19 6 0.4097 -4.0292 6.9670 20 7 -0.4485 -5.0207 6.5983 21 6 -1.3058 -5.8298 7.2796 22 6 -1.9160 -6.6224 6.3679 23 7 -1.4398 -6.3232 5.1563 24 6 -0.5527 -5.3541 5.2677 25 6 1.4850 -5.9688 0.2723 26 6 3.0201 -5.7382 0.1526 27 6 3.2277 -4.1899 0.1966 28 6 1.8913 -3.6875 -0.2802 29 1 1.7693 -3.9836 -1.3222 30 1 -0.4851 0.8400 0.0004 31 1 -0.5819 -2.0982 0.7714 32 1 -0.5883 -2.1637 -1.0140 33 1 -1.2388 -4.3603 0.5983 34 1 -0.5386 -4.5332 -1.0477 35 1 1.5762 -3.5788 2.3016 36 1 1.8281 -2.6022 6.3589 37 1 0.4962 -3.7552 8.0081 38 1 -1.4762 -5.8304 8.3461 39 1 -2.6571 -7.3775 6.5848 40 1 1.0851 -6.3586 -0.6638 41 1 1.2660 -6.6511 1.0936 42 1 3.3878 -6.1398 -0.7916 43 1 3.5371 -6.2103 0.9880 44 1 3.4315 -3.8523 1.2127 45 1 4.0241 -3.8837 -0.4817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992222998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = 101.851015 kcal Electronic energy + Delta-G solvation = -30668.235369 eV Core-core repulsion = 26688.032367 eV Total energy + Delta-G solvation = -3980.203002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -44.04477 -41.95560 -39.89937 -39.09365 -36.14317 -35.41065 -34.40731 -33.54886 -31.89073 -31.31763 -30.49780 -28.53752 -27.54456 -26.44636 -25.89283 -24.34534 -23.43537 -22.38412 -21.99447 -21.24115 -20.24321 -19.58514 -19.29251 -18.31666 -17.48778 -17.33058 -17.24085 -16.50802 -16.42087 -16.19854 -15.90237 -15.69302 -15.52105 -15.24202 -15.06689 -14.78319 -14.23619 -14.08893 -14.04998 -13.87531 -13.52985 -13.03407 -12.98182 -12.83688 -12.68738 -12.57293 -12.17624 -12.10016 -12.02340 -11.80142 -11.56168 -11.44658 -11.34640 -11.28840 -11.03241 -10.73275 -10.63443 -10.09799 -9.91949 -9.23540 -8.83556 -7.82664 -5.17554 -1.02686 0.13160 1.25601 1.48579 1.50455 1.58936 1.60584 1.85338 2.04057 2.52565 2.59023 2.86606 2.98451 3.10038 3.25151 3.39028 3.70464 3.77885 3.89688 4.01442 4.11121 4.17622 4.30228 4.34120 4.36554 4.39835 4.43283 4.58471 4.62898 4.73452 4.81383 4.94754 4.98616 5.06909 5.07481 5.12625 5.23214 5.30208 5.45461 5.49686 5.58419 5.60185 5.67200 5.71927 5.76893 6.19916 6.33972 6.63383 6.77721 7.06158 7.21098 7.78967 8.52265 9.30676 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.004078 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.348982 B = 6865.105811 C = 8067.020642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.062 4.062 3 Si 0.974 3.026 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.262 1.262 7 C -0.231 4.231 8 H 0.090 0.910 9 N -0.596 5.596 10 C 0.194 3.806 11 C -0.129 4.129 12 C 0.135 3.865 13 N -0.667 5.667 14 C 0.567 3.433 15 O -0.539 6.539 16 C 0.137 3.863 17 N -0.432 5.432 18 C 0.008 3.992 19 C 0.062 3.938 20 N -0.360 5.360 21 C -0.059 4.059 22 C 0.010 3.990 23 N -0.489 5.489 24 C 0.161 3.839 25 C -0.108 4.108 26 C -0.102 4.102 27 C -0.110 4.110 28 C 0.150 3.850 29 H 0.024 0.976 30 H 0.244 0.756 31 H 0.017 0.983 32 H 0.008 0.992 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.409 0.591 36 H 0.221 0.779 37 H 0.236 0.764 38 H 0.244 0.756 39 H 0.216 0.784 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -11.712 17.444 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.255 4.255 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.227 1.227 6 H -0.187 1.187 7 C -0.359 4.359 8 H 0.108 0.892 9 N -0.319 5.319 10 C 0.070 3.930 11 C -0.168 4.168 12 C 0.047 3.953 13 N -0.317 5.317 14 C 0.350 3.650 15 O -0.415 6.415 16 C -0.027 4.027 17 N -0.147 5.147 18 C -0.133 4.133 19 C -0.063 4.063 20 N -0.035 5.035 21 C -0.191 4.191 22 C -0.141 4.141 23 N -0.210 5.210 24 C -0.086 4.086 25 C -0.147 4.147 26 C -0.140 4.140 27 C -0.148 4.148 28 C 0.040 3.960 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.245 0.755 36 H 0.237 0.763 37 H 0.253 0.747 38 H 0.261 0.739 39 H 0.232 0.768 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.686 -11.920 16.011 20.298 hybrid contribution -0.331 1.618 1.134 2.004 sum 3.354 -10.302 17.145 20.281 Atomic orbital electron populations 1.70166 1.06549 1.25120 1.58236 1.25604 0.96303 1.00913 1.02680 0.85124 0.78093 0.79531 0.76987 1.21919 1.22746 1.18663 1.19414 0.91335 0.83155 1.42037 0.89222 1.43783 1.01737 1.01498 1.84885 1.21614 0.83603 0.90234 0.97576 1.22667 0.97017 0.96469 1.00672 1.21675 0.96902 0.96781 0.79926 1.45520 1.42230 1.37763 1.06215 1.17543 0.80958 0.82269 0.84194 1.90797 1.39353 1.32460 1.78880 1.21917 0.93994 0.93459 0.93369 1.68067 1.16371 1.10855 1.19427 1.22885 1.01878 1.02636 0.85936 1.23687 0.89746 0.87822 1.05052 1.43249 1.27331 1.24319 1.08560 1.23632 0.97138 0.96725 1.01619 1.23594 1.01924 1.01972 0.86655 1.70595 1.10520 1.12871 1.27045 1.22397 1.02132 0.99736 0.84328 1.21907 0.96313 0.94140 1.02296 1.22754 0.94189 0.93908 1.03150 1.21852 0.95932 0.95859 1.01170 1.21058 0.94145 0.84816 0.95939 0.95855 0.94660 0.96440 0.97392 0.92653 0.89588 0.75456 0.76275 0.74741 0.73937 0.76787 0.89564 0.92069 0.89291 0.90763 0.92107 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.84 10.61 21.65 0.23 -57.61 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.97 45.28 29.56 68.60 2.03 47.31 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.23 -12.48 10.28 84.03 0.86 -11.62 16 8 H 0.09 4.56 7.84 -2.91 -0.02 4.54 16 9 N -0.60 -30.04 3.12 -668.58 -2.09 -32.12 16 10 C 0.19 10.11 5.29 86.96 0.46 10.57 16 11 C -0.13 -5.57 6.19 31.43 0.19 -5.38 16 12 C 0.13 5.21 0.40 4.37 0.00 5.21 16 13 N -0.67 -26.44 4.38 -422.33 -1.85 -28.29 16 14 C 0.57 23.13 7.14 86.77 0.62 23.75 16 15 O -0.54 -24.44 14.38 -3.90 -0.06 -24.49 16 16 C 0.14 4.89 6.97 43.69 0.30 5.19 16 17 N -0.43 -13.22 9.67 -181.37 -1.75 -14.97 16 18 C 0.01 0.15 11.01 83.93 0.92 1.07 16 19 C 0.06 0.88 11.00 83.38 0.92 1.80 16 20 N -0.36 -7.73 2.95 -347.29 -1.02 -8.76 16 21 C -0.06 -0.91 11.80 83.35 0.98 0.08 16 22 C 0.01 0.21 11.83 83.76 0.99 1.20 16 23 N -0.49 -16.74 10.74 -189.61 -2.04 -18.77 16 24 C 0.16 5.29 7.66 135.58 1.04 6.33 16 25 C -0.11 -3.45 6.05 30.99 0.19 -3.26 16 26 C -0.10 -2.72 6.93 32.66 0.23 -2.50 16 27 C -0.11 -3.56 6.47 30.93 0.20 -3.36 16 28 C 0.15 6.06 2.64 46.47 0.12 6.18 16 29 H 0.02 0.99 7.94 -2.38 -0.02 0.97 16 30 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.02 1.02 7.32 -2.38 -0.02 1.01 16 32 H 0.01 0.45 7.82 -2.39 -0.02 0.43 16 33 H 0.05 2.52 7.17 -2.39 -0.02 2.51 16 34 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 35 H 0.41 16.70 7.18 -92.71 -0.67 16.04 16 36 H 0.22 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.24 0.36 8.06 -2.91 -0.02 0.33 16 38 H 0.24 0.83 8.06 -2.91 -0.02 0.80 16 39 H 0.22 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.06 2.11 6.86 -2.39 -0.02 2.09 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 2.04 7.38 -2.39 -0.02 2.02 16 45 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -83.07 364.64 2.32 -80.75 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.36 Total: 24.71 kcal Atomic # 6 Polarization: 23.74 SS G_CDS: 8.50 Total: 32.24 kcal Atomic # 7 Polarization: -152.00 SS G_CDS: -8.52 Total: -160.52 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -83.07 2.32 -80.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992222998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.604 kcal (2) G-P(sol) polarization free energy of solvation -83.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds