Wall clock time and date at job start Sat Apr 11 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99596 * 2 1 4 4 H 1.48504 * 109.47420 * 89.99614 * 3 2 1 5 5 H 1.48497 * 109.47121 * 209.99388 * 3 2 1 6 6 H 1.48503 * 109.47559 * 329.99669 * 3 2 1 7 7 C 1.38805 * 119.99959 * 180.27044 * 2 1 3 8 8 H 1.08001 * 120.00476 * 23.51210 * 7 2 1 9 9 N 1.36945 * 119.99903 * 203.50817 * 7 2 1 10 10 C 1.47369 * 125.57634 * 14.44101 * 9 7 2 11 11 C 1.55092 * 104.70898 * 155.25718 * 10 9 7 12 12 C 1.54920 * 101.66878 * 37.35746 * 11 10 9 13 13 N 1.46505 * 112.33237 * 86.04717 * 12 11 10 14 14 C 1.34778 * 119.99741 * 64.35969 * 13 12 11 15 15 O 1.21564 * 120.00062 * 359.97438 * 14 13 12 16 16 C 1.47798 * 119.99949 * 180.02562 * 14 13 12 17 17 N 1.32301 * 120.59217 * 359.97438 * 16 14 13 18 18 C 1.32688 * 121.19032 * 180.02562 * 17 16 14 19 19 C 1.35481 * 122.11170 * 0.02562 * 18 17 16 20 20 N 1.36214 * 120.52808 * 359.97026 * 19 18 17 21 21 C 1.36159 * 133.93236 * 180.02562 * 20 19 18 22 22 C 1.35344 * 107.14273 * 179.34486 * 21 20 19 23 23 N 1.33563 * 108.61311 * 0.56288 * 22 21 20 24 24 C 1.31855 * 109.14182 * 359.49512 * 23 22 21 25 25 C 1.53579 * 109.57206 * 211.52572 * 12 11 10 26 26 C 1.54225 * 106.67681 * 113.30109 * 25 12 11 27 27 C 1.56754 * 104.50469 * 335.25065 * 26 25 12 28 28 C 1.46975 * 125.58019 * 194.75248 * 9 7 2 29 29 H 1.09002 * 111.81613 * 59.02280 * 28 9 7 30 30 H 0.97003 * 119.99842 * 174.63859 * 1 2 3 31 31 H 1.09004 * 110.37062 * 274.17975 * 10 9 7 32 32 H 1.09000 * 110.37189 * 36.50986 * 10 9 7 33 33 H 1.08994 * 111.15574 * 279.21366 * 11 10 9 34 34 H 1.09001 * 110.90411 * 155.39182 * 11 10 9 35 35 H 0.96998 * 120.00106 * 244.36189 * 13 12 11 36 36 H 1.07997 * 118.94050 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.73491 * 180.02562 * 19 18 17 38 38 H 1.08002 * 126.42867 * 0.02562 * 21 20 19 39 39 H 1.08000 * 125.69380 * 180.08127 * 22 21 20 40 40 H 1.09009 * 110.01811 * 232.60083 * 25 12 11 41 41 H 1.08996 * 110.01946 * 353.94958 * 25 12 11 42 42 H 1.09001 * 110.49140 * 93.72097 * 26 25 12 43 43 H 1.08990 * 110.49206 * 216.25613 * 26 25 12 44 44 H 1.09002 * 111.09610 * 279.18714 * 27 26 25 45 45 H 1.08999 * 111.11538 * 155.43477 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5477 1.4403 -0.6999 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0057 8 1 1.5376 -2.0968 -0.3830 9 7 3.2945 -1.2535 0.4672 10 6 3.9535 -0.2111 1.2739 11 6 5.0602 -0.9618 2.0593 12 6 5.5453 -1.9925 1.0094 13 7 6.5756 -1.4430 0.1246 14 6 7.7707 -1.0763 0.6284 15 8 7.9935 -1.2010 1.8169 16 6 8.8100 -0.5214 -0.2641 17 7 8.5799 -0.3801 -1.5592 18 6 9.5045 0.1163 -2.3713 19 6 10.7239 0.5017 -1.9241 20 7 11.0439 0.3905 -0.6047 21 6 12.1544 0.6848 0.1260 22 6 11.8804 0.3687 1.4132 23 7 10.6390 -0.1199 1.4771 24 6 10.1094 -0.1144 0.2696 25 6 6.0115 -3.2712 1.7209 26 6 5.0206 -4.3846 1.3248 27 6 3.7026 -3.6225 0.9515 28 6 4.2431 -2.3545 0.2477 29 1 4.4264 -2.5259 -0.8130 30 1 -0.4850 -0.8364 -0.0785 31 1 4.3929 0.5482 0.6269 32 1 3.2410 0.2425 1.9629 33 1 4.6496 -1.4622 2.9363 34 1 5.8655 -0.2835 2.3410 35 1 6.3977 -1.3431 -0.8236 36 1 9.2779 0.2154 -3.4226 37 1 11.4476 0.9012 -2.6191 38 1 13.0767 1.1033 -0.2491 39 1 12.5558 0.4843 2.2480 40 1 7.0179 -3.5340 1.3946 41 1 5.9962 -3.1240 2.8008 42 1 5.3923 -4.9370 0.4618 43 1 4.8492 -5.0590 2.1636 44 1 3.1374 -3.3555 1.8445 45 1 3.0894 -4.2100 0.2682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992223003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:25 Heat of formation + Delta-G solvation = 86.298825 kcal Electronic energy + Delta-G solvation = -30312.108618 eV Core-core repulsion = 26331.231223 eV Total energy + Delta-G solvation = -3980.877395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.05856 -41.73266 -39.92998 -39.16296 -36.17571 -35.44994 -34.71523 -33.87548 -31.96702 -31.34355 -30.53528 -28.74525 -27.93977 -26.38547 -25.16853 -24.35603 -23.58356 -22.82572 -22.04749 -21.24904 -20.34413 -19.62108 -19.48016 -19.15209 -17.79326 -17.35307 -17.03780 -16.80462 -16.44900 -16.39815 -15.99565 -15.69696 -15.52877 -15.30897 -14.92935 -14.84551 -14.75364 -14.39054 -14.11189 -13.95827 -13.59323 -13.43502 -13.13738 -12.89383 -12.65888 -12.61430 -12.37853 -11.99963 -11.86876 -11.71371 -11.55070 -11.48961 -11.45064 -11.27856 -11.18739 -10.87720 -10.61896 -10.14473 -10.02027 -9.25225 -9.12047 -8.55768 -5.40744 -1.06290 0.11877 1.22297 1.39935 1.49090 1.52774 1.65972 1.84120 1.89742 2.51594 2.53635 2.79927 2.90846 3.06581 3.22000 3.24578 3.40300 3.71573 3.71878 3.85418 3.98407 4.15443 4.20693 4.21231 4.34164 4.34750 4.37406 4.42107 4.54573 4.66885 4.72145 4.75990 4.78476 4.84314 5.00144 5.03057 5.06097 5.15097 5.21773 5.27091 5.44677 5.49098 5.56021 5.68189 5.70312 6.15189 6.25637 6.52112 6.75369 6.85465 7.08031 7.51104 8.17020 8.91334 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.003619 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.312197 B = 7734.524050 C = 8659.481405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.074 4.074 3 Si 1.099 2.901 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.305 1.305 7 C -0.299 4.299 8 H 0.052 0.948 9 N -0.615 5.615 10 C 0.103 3.897 11 C -0.119 4.119 12 C 0.170 3.830 13 N -0.685 5.685 14 C 0.572 3.428 15 O -0.526 6.526 16 C 0.136 3.864 17 N -0.428 5.428 18 C 0.009 3.991 19 C 0.065 3.935 20 N -0.361 5.361 21 C -0.058 4.058 22 C 0.010 3.990 23 N -0.490 5.490 24 C 0.162 3.838 25 C -0.103 4.103 26 C -0.108 4.108 27 C -0.122 4.122 28 C 0.154 3.846 29 H 0.056 0.944 30 H 0.250 0.750 31 H 0.027 0.973 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.414 0.586 36 H 0.225 0.775 37 H 0.235 0.765 38 H 0.243 0.757 39 H 0.213 0.787 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.206 -0.812 -5.637 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.268 4.268 3 Si 0.928 3.072 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.233 1.233 7 C -0.428 4.428 8 H 0.070 0.930 9 N -0.341 5.341 10 C -0.022 4.022 11 C -0.158 4.158 12 C 0.083 3.917 13 N -0.336 5.336 14 C 0.356 3.644 15 O -0.400 6.400 16 C -0.028 4.028 17 N -0.143 5.143 18 C -0.132 4.132 19 C -0.060 4.060 20 N -0.035 5.035 21 C -0.191 4.191 22 C -0.141 4.141 23 N -0.210 5.210 24 C -0.085 4.085 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.162 4.162 28 C 0.047 3.953 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.251 0.749 36 H 0.241 0.759 37 H 0.251 0.749 38 H 0.259 0.741 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 29.017 0.273 -4.553 29.373 hybrid contribution 0.411 -0.970 -0.883 1.375 sum 29.428 -0.697 -5.436 29.934 Atomic orbital electron populations 1.71006 1.06922 1.29209 1.53315 1.26831 0.96431 1.03784 0.99731 0.83363 0.73774 0.73123 0.76980 1.21078 1.19602 1.23342 1.19900 0.88136 0.95186 1.39585 0.92991 1.44874 1.10235 1.19183 1.59828 1.22097 0.94267 0.92523 0.93284 1.23033 0.97096 0.98294 0.97418 1.21536 0.86174 0.93814 0.90133 1.45677 1.12208 1.63154 1.12592 1.17498 0.81658 0.78468 0.86780 1.90847 1.79850 1.53876 1.15446 1.21752 0.89881 1.00540 0.90641 1.68033 1.34033 1.10481 1.01776 1.22895 0.88253 0.99735 1.02355 1.23729 1.00533 0.98725 0.83026 1.43252 1.12857 1.38981 1.08449 1.23614 0.92829 1.11123 0.91503 1.23565 0.92847 0.99607 0.98061 1.70598 1.10357 1.20433 1.19649 1.22413 0.93281 1.05870 0.86934 1.22181 0.99037 0.92668 1.00306 1.22628 0.93279 0.96734 1.02000 1.23071 0.97254 0.95980 0.99859 1.22053 0.87197 0.89144 0.96859 0.92621 0.94081 0.95575 0.93977 0.89625 0.90677 0.74930 0.75917 0.74897 0.74105 0.77015 0.91548 0.90839 0.90329 0.89926 0.92715 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.13 13.70 21.65 0.30 -61.84 16 2 C -0.07 -4.42 5.42 84.86 0.46 -3.96 16 3 Si 1.10 55.89 24.69 68.60 1.69 57.59 16 4 H -0.28 -13.80 6.66 99.48 0.66 -13.14 16 5 H -0.27 -12.81 6.21 99.48 0.62 -12.19 16 6 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 7 C -0.30 -17.18 10.16 84.03 0.85 -16.32 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.62 -29.86 2.89 -663.26 -1.92 -31.78 16 10 C 0.10 4.68 4.70 86.93 0.41 5.09 16 11 C -0.12 -4.59 5.80 31.97 0.19 -4.40 16 12 C 0.17 5.91 0.73 5.19 0.00 5.91 16 13 N -0.68 -22.27 5.23 -418.64 -2.19 -24.46 16 14 C 0.57 19.31 6.96 86.77 0.60 19.91 16 15 O -0.53 -20.48 14.10 -3.92 -0.06 -20.53 16 16 C 0.14 3.92 6.97 43.69 0.30 4.22 16 17 N -0.43 -9.84 9.67 -181.38 -1.75 -11.59 16 18 C 0.01 0.11 11.01 83.93 0.92 1.04 16 19 C 0.06 0.58 11.00 83.38 0.92 1.50 16 20 N -0.36 -6.02 2.95 -347.30 -1.02 -7.04 16 21 C -0.06 -0.68 11.80 83.35 0.98 0.30 16 22 C 0.01 0.18 11.83 83.76 0.99 1.17 16 23 N -0.49 -14.51 10.74 -189.61 -2.04 -16.55 16 24 C 0.16 4.44 7.66 135.58 1.04 5.48 16 25 C -0.10 -3.13 5.25 31.20 0.16 -2.97 16 26 C -0.11 -2.96 6.88 32.32 0.22 -2.73 16 27 C -0.12 -4.32 6.38 32.51 0.21 -4.11 16 28 C 0.15 6.03 3.59 46.24 0.17 6.20 16 29 H 0.06 2.16 7.98 -2.39 -0.02 2.14 16 30 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 31 H 0.03 1.23 5.54 -2.39 -0.01 1.21 16 32 H 0.04 2.06 6.32 -2.39 -0.02 2.04 16 33 H 0.09 3.17 7.65 -2.39 -0.02 3.15 16 34 H 0.07 2.91 6.82 -2.39 -0.02 2.89 16 35 H 0.41 12.68 7.87 -92.71 -0.73 11.95 16 36 H 0.22 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.23 -0.71 8.06 -2.91 -0.02 -0.74 16 38 H 0.24 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.07 2.01 7.40 -2.38 -0.02 1.99 16 41 H 0.07 2.26 7.41 -2.39 -0.02 2.24 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 2.16 8.09 -2.39 -0.02 2.15 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -85.07 358.61 1.59 -83.48 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.14 Total: 16.40 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 8.43 Total: 16.32 kcal Atomic # 7 Polarization: -144.64 SS G_CDS: -8.62 Total: -153.26 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 55.89 SS G_CDS: 1.69 Total: 57.59 kcal Total: -85.07 1.59 -83.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992223003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.780 kcal (2) G-P(sol) polarization free energy of solvation -85.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds