Wall clock time and date at job start Sat Apr 11 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99773 * 2 1 4 4 H 1.48507 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47107 * 299.99708 * 3 2 1 6 6 H 1.48500 * 109.47293 * 60.00137 * 3 2 1 7 7 C 1.38815 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00143 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99489 * 0.02562 * 7 2 1 10 10 C 1.49294 * 127.10422 * 0.02562 * 9 7 2 11 11 C 1.57754 * 106.66548 * 171.21612 * 10 9 7 12 12 C 1.52141 * 100.12636 * 336.77654 * 11 10 9 13 13 N 1.46493 * 111.09512 * 285.60173 * 12 11 10 14 14 C 1.34784 * 119.99864 * 281.63510 * 13 12 11 15 15 O 1.21552 * 119.99772 * 359.72918 * 14 13 12 16 16 C 1.47878 * 120.00191 * 179.72684 * 14 13 12 17 17 C 1.39895 * 125.69682 * 180.02562 * 16 14 13 18 18 C 1.38580 * 107.59725 * 179.97438 * 17 16 14 19 19 N 1.34108 * 132.34553 * 180.02562 * 18 17 16 20 20 C 1.31139 * 120.84389 * 180.02562 * 19 18 17 21 21 C 1.40347 * 120.29240 * 359.92431 * 20 19 18 22 22 C 1.35448 * 119.46778 * 0.04262 * 21 20 19 23 23 N 1.36672 * 119.14005 * 359.97438 * 22 21 20 24 24 N 1.32377 * 125.69115 * 359.69330 * 16 14 13 25 25 C 1.51232 * 122.09557 * 151.41644 * 12 11 10 26 26 C 1.55685 * 104.60857 * 218.08303 * 25 12 11 27 27 C 1.56283 * 105.94021 * 7.24656 * 26 25 12 28 28 C 1.42698 * 127.10071 * 179.97438 * 9 7 2 29 29 H 1.09000 * 107.77811 * 103.64638 * 28 9 7 30 30 H 0.97004 * 119.99946 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.04999 * 290.58217 * 10 9 7 32 32 H 1.08996 * 110.05168 * 52.06416 * 10 9 7 33 33 H 1.09007 * 111.83629 * 218.97916 * 11 10 9 34 34 H 1.08996 * 111.09813 * 94.28208 * 11 10 9 35 35 H 0.97000 * 120.00740 * 101.36202 * 13 12 11 36 36 H 1.08001 * 126.20151 * 359.94898 * 17 16 14 37 37 H 1.07991 * 119.85407 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.26217 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.42852 * 180.02562 * 22 21 20 40 40 H 1.08996 * 110.41053 * 336.86363 * 25 12 11 41 41 H 1.09002 * 110.40603 * 99.17991 * 25 12 11 42 42 H 1.09003 * 110.15963 * 126.36520 * 26 25 12 43 43 H 1.09008 * 110.15864 * 248.13386 * 26 25 12 44 44 H 1.09001 * 110.97381 * 142.36955 * 27 26 25 45 45 H 1.08994 * 110.97347 * 266.11125 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1559 -2.5726 -0.0005 11 6 -0.4199 -4.1107 -0.2308 12 6 0.8813 -4.5064 -0.9127 13 7 0.9173 -4.0292 -2.2973 14 6 0.2402 -4.6916 -3.2562 15 8 -0.3963 -5.6876 -2.9729 16 6 0.2716 -4.2065 -4.6528 17 6 -0.3844 -4.7983 -5.7374 18 6 -0.1018 -4.0401 -6.8624 19 7 -0.4696 -4.1576 -8.1467 20 6 -0.0615 -3.2934 -9.0447 21 6 0.7700 -2.2256 -8.6731 22 6 1.1485 -2.0949 -7.3791 23 7 0.7102 -3.0086 -6.4620 24 7 0.9202 -3.1362 -5.0842 25 6 1.4538 -5.9018 -0.8033 26 6 2.9924 -5.6879 -0.6984 27 6 3.2031 -4.1450 -0.5659 28 6 1.8809 -3.7025 0.0005 29 1 1.7848 -4.1044 1.0092 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5719 -2.2612 0.9576 32 1 -0.6039 -1.9945 -0.8087 33 1 -1.2747 -4.2818 -0.8853 34 1 -0.5421 -4.6341 0.7174 35 1 1.4252 -3.2343 -2.5234 36 1 -0.9994 -5.6855 -5.7041 37 1 -0.3671 -3.4035 -10.0746 38 1 1.1055 -1.5140 -9.4130 39 1 1.7877 -1.2789 -7.0760 40 1 1.0773 -6.3982 0.0911 41 1 1.2088 -6.4839 -1.6917 42 1 3.3833 -6.1974 0.1824 43 1 3.4853 -6.0585 -1.5972 44 1 4.0176 -3.9202 0.1226 45 1 3.3819 -3.6906 -1.5404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992367815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:07 Heat of formation + Delta-G solvation = 133.843611 kcal Electronic energy + Delta-G solvation = -30290.855847 eV Core-core repulsion = 26312.040149 eV Total energy + Delta-G solvation = -3978.815699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -42.42938 -40.47537 -38.59931 -37.50480 -34.40482 -34.20349 -33.15026 -31.80894 -31.17705 -29.79851 -29.25036 -26.92333 -26.09208 -25.13053 -24.14728 -23.97181 -22.60290 -20.57317 -20.36473 -19.59737 -18.82070 -18.42586 -17.75330 -16.81458 -16.48094 -16.24503 -15.75975 -15.60689 -14.90881 -14.74159 -14.55580 -14.25577 -13.98295 -13.92063 -13.58183 -13.45471 -13.18523 -12.68546 -12.62464 -12.34839 -11.86805 -11.50904 -11.41762 -11.38779 -11.32350 -11.02674 -10.94831 -10.79397 -10.55929 -10.30681 -10.12712 -10.02450 -9.95562 -9.78861 -9.70008 -9.67399 -9.23261 -8.69965 -8.52059 -8.11169 -6.88780 -5.76716 -3.11430 0.27890 0.58223 1.80445 1.86957 3.16627 3.29419 3.35453 3.41472 3.43695 3.58410 3.71131 3.99375 4.14837 4.43425 4.60699 4.63777 4.78612 5.06808 5.16634 5.24713 5.28002 5.31866 5.47350 5.58664 5.60777 5.74810 5.78101 5.80577 5.92828 6.01275 6.12991 6.16863 6.24093 6.27323 6.31958 6.38842 6.45641 6.49870 6.63304 6.80361 6.90683 7.05613 7.17992 7.36926 7.49756 7.58584 7.75967 7.99687 8.17279 8.53214 9.11068 9.77627 10.46166 11.35529 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.004142 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.516553 B = 6757.775636 C = 8558.799591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.586 5.586 10 C 0.178 3.822 11 C -0.141 4.141 12 C 0.129 3.871 13 N -0.668 5.668 14 C 0.595 3.405 15 O -0.528 6.528 16 C 0.080 3.920 17 C -0.201 4.201 18 C 0.243 3.757 19 N -0.458 5.458 20 C 0.176 3.824 21 C -0.228 4.228 22 C 0.167 3.833 23 N -0.308 5.308 24 N -0.265 5.265 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.115 4.115 28 C 0.160 3.840 29 H 0.026 0.974 30 H 0.252 0.748 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.172 0.828 37 H 0.180 0.820 38 H 0.168 0.832 39 H 0.182 0.818 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -7.069 -15.434 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.309 5.309 10 C 0.054 3.946 11 C -0.180 4.180 12 C 0.042 3.958 13 N -0.319 5.319 14 C 0.377 3.623 15 O -0.404 6.404 16 C -0.080 4.080 17 C -0.233 4.233 18 C 0.018 3.982 19 N -0.169 5.169 20 C -0.010 4.010 21 C -0.252 4.252 22 C 0.033 3.967 23 N -0.081 5.081 24 N -0.095 5.095 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.154 4.154 28 C 0.049 3.951 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.189 0.811 37 H 0.197 0.803 38 H 0.185 0.815 39 H 0.199 0.801 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.700 -7.373 -14.678 16.646 hybrid contribution 0.652 1.615 -0.298 1.767 sum 3.352 -5.758 -14.976 16.391 Atomic orbital electron populations 1.69924 1.04903 1.25021 1.56593 1.24787 0.95601 0.97621 1.02017 0.86096 0.78783 0.83974 0.77200 1.20486 1.21878 1.21768 1.19054 0.90310 0.82189 1.44234 0.90201 1.43698 1.01733 0.99329 1.86127 1.22289 0.83172 0.88292 1.00841 1.23079 0.95979 0.99729 0.99247 1.21662 0.98732 0.94518 0.80931 1.45657 1.49162 1.29895 1.07141 1.16820 0.80158 0.83563 0.81799 1.90764 1.42862 1.25538 1.81211 1.22360 0.96390 0.93146 0.96102 1.20959 1.09946 1.05115 0.87236 1.20537 0.94887 0.90452 0.92330 1.68234 1.22885 1.27504 0.98233 1.23408 0.90128 0.88078 0.99376 1.21828 1.04607 1.03362 0.95393 1.22141 0.95466 0.92044 0.87076 1.47226 1.33266 1.19637 1.07972 1.78316 1.25960 1.20358 0.84819 1.21923 0.94746 0.95979 1.02807 1.22818 0.95828 0.95874 1.00968 1.21840 0.97793 0.94599 1.01144 1.20861 0.91610 0.87313 0.95273 0.95657 0.93744 0.94471 0.91692 0.91482 0.91288 0.74989 0.81082 0.80308 0.81470 0.80136 0.90944 0.90468 0.91887 0.92321 0.91731 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.55 55.49 0.59 -25.77 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.09 10.28 -15.06 -0.15 -6.25 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -14.19 3.04 -161.73 -0.49 -14.68 16 10 C 0.18 4.27 5.37 0.11 0.00 4.27 16 11 C -0.14 -2.81 6.41 -24.57 -0.16 -2.97 16 12 C 0.13 2.41 0.42 -130.72 -0.06 2.35 16 13 N -0.67 -12.65 4.30 -47.51 -0.20 -12.86 16 14 C 0.59 11.14 7.23 -12.31 -0.09 11.05 16 15 O -0.53 -10.57 15.00 5.32 0.08 -10.49 16 16 C 0.08 1.41 7.05 -83.07 -0.59 0.82 16 17 C -0.20 -3.21 10.65 -38.84 -0.41 -3.63 16 18 C 0.24 3.56 7.90 -155.42 -1.23 2.33 16 19 N -0.46 -5.56 10.48 -12.22 -0.13 -5.69 16 20 C 0.18 1.33 11.27 -17.05 -0.19 1.14 16 21 C -0.23 -1.43 10.05 -39.78 -0.40 -1.83 16 22 C 0.17 1.57 11.30 -16.39 -0.19 1.38 16 23 N -0.31 -4.36 3.90 -12.20 -0.05 -4.40 16 24 N -0.27 -4.53 12.34 33.23 0.41 -4.12 16 25 C -0.12 -1.88 5.97 -26.19 -0.16 -2.04 16 26 C -0.12 -1.70 6.94 -23.54 -0.16 -1.87 16 27 C -0.12 -1.97 6.45 -26.22 -0.17 -2.14 16 28 C 0.16 3.21 2.61 -68.75 -0.18 3.03 16 29 H 0.03 0.54 7.99 -51.93 -0.42 0.12 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 0.97 7.98 -51.93 -0.41 0.55 16 32 H 0.06 1.75 7.05 -51.93 -0.37 1.38 16 33 H 0.07 1.36 7.79 -51.92 -0.40 0.95 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.41 8.30 7.64 -40.82 -0.31 7.99 16 36 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 37 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.17 0.35 8.06 -52.49 -0.42 -0.07 16 39 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.32 6.20 -51.93 -0.32 1.00 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.07 1.16 7.52 -51.93 -0.39 0.77 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -33.14 367.16 -9.49 -42.62 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.98 Total: 7.81 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -4.23 Total: 5.47 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.12 Total: -67.53 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.14 -9.49 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992367815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.467 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds