Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99773 * 2 1 4 4 H 1.48507 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47107 * 299.99708 * 3 2 1 6 6 H 1.48500 * 109.47293 * 60.00137 * 3 2 1 7 7 C 1.38815 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00143 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99489 * 0.02562 * 7 2 1 10 10 C 1.49294 * 127.10422 * 0.02562 * 9 7 2 11 11 C 1.57754 * 106.66548 * 171.21612 * 10 9 7 12 12 C 1.52141 * 100.12636 * 336.77654 * 11 10 9 13 13 N 1.46493 * 111.09512 * 285.60173 * 12 11 10 14 14 C 1.34784 * 119.99864 * 281.63510 * 13 12 11 15 15 O 1.21552 * 119.99772 * 359.72918 * 14 13 12 16 16 C 1.47878 * 120.00191 * 179.72684 * 14 13 12 17 17 C 1.39895 * 125.69682 * 180.02562 * 16 14 13 18 18 C 1.38580 * 107.59725 * 179.97438 * 17 16 14 19 19 N 1.34108 * 132.34553 * 180.02562 * 18 17 16 20 20 C 1.31139 * 120.84389 * 180.02562 * 19 18 17 21 21 C 1.40347 * 120.29240 * 359.92431 * 20 19 18 22 22 C 1.35448 * 119.46778 * 0.04262 * 21 20 19 23 23 N 1.36672 * 119.14005 * 359.97438 * 22 21 20 24 24 N 1.32377 * 125.69115 * 359.69330 * 16 14 13 25 25 C 1.51232 * 122.09557 * 151.41644 * 12 11 10 26 26 C 1.55685 * 104.60857 * 218.08303 * 25 12 11 27 27 C 1.56283 * 105.94021 * 7.24656 * 26 25 12 28 28 C 1.42698 * 127.10071 * 179.97438 * 9 7 2 29 29 H 1.09000 * 107.77811 * 103.64638 * 28 9 7 30 30 H 0.97004 * 119.99946 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.04999 * 290.58217 * 10 9 7 32 32 H 1.08996 * 110.05168 * 52.06416 * 10 9 7 33 33 H 1.09007 * 111.83629 * 218.97916 * 11 10 9 34 34 H 1.08996 * 111.09813 * 94.28208 * 11 10 9 35 35 H 0.97000 * 120.00740 * 101.36202 * 13 12 11 36 36 H 1.08001 * 126.20151 * 359.94898 * 17 16 14 37 37 H 1.07991 * 119.85407 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.26217 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.42852 * 180.02562 * 22 21 20 40 40 H 1.08996 * 110.41053 * 336.86363 * 25 12 11 41 41 H 1.09002 * 110.40603 * 99.17991 * 25 12 11 42 42 H 1.09003 * 110.15963 * 126.36520 * 26 25 12 43 43 H 1.09008 * 110.15864 * 248.13386 * 26 25 12 44 44 H 1.09001 * 110.97381 * 142.36955 * 27 26 25 45 45 H 1.08994 * 110.97347 * 266.11125 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1559 -2.5726 -0.0005 11 6 -0.4199 -4.1107 -0.2308 12 6 0.8813 -4.5064 -0.9127 13 7 0.9173 -4.0292 -2.2973 14 6 0.2402 -4.6916 -3.2562 15 8 -0.3963 -5.6876 -2.9729 16 6 0.2716 -4.2065 -4.6528 17 6 -0.3844 -4.7983 -5.7374 18 6 -0.1018 -4.0401 -6.8624 19 7 -0.4696 -4.1576 -8.1467 20 6 -0.0615 -3.2934 -9.0447 21 6 0.7700 -2.2256 -8.6731 22 6 1.1485 -2.0949 -7.3791 23 7 0.7102 -3.0086 -6.4620 24 7 0.9202 -3.1362 -5.0842 25 6 1.4538 -5.9018 -0.8033 26 6 2.9924 -5.6879 -0.6984 27 6 3.2031 -4.1450 -0.5659 28 6 1.8809 -3.7025 0.0005 29 1 1.7848 -4.1044 1.0092 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5719 -2.2612 0.9576 32 1 -0.6039 -1.9945 -0.8087 33 1 -1.2747 -4.2818 -0.8853 34 1 -0.5421 -4.6341 0.7174 35 1 1.4252 -3.2343 -2.5234 36 1 -0.9994 -5.6855 -5.7041 37 1 -0.3671 -3.4035 -10.0746 38 1 1.1055 -1.5140 -9.4130 39 1 1.7877 -1.2789 -7.0760 40 1 1.0773 -6.3982 0.0911 41 1 1.2088 -6.4839 -1.6917 42 1 3.3833 -6.1974 0.1824 43 1 3.4853 -6.0585 -1.5972 44 1 4.0176 -3.9202 0.1226 45 1 3.3819 -3.6906 -1.5404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992367815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = 112.124094 kcal Electronic energy + Delta-G solvation = -30291.797676 eV Core-core repulsion = 26312.040149 eV Total energy + Delta-G solvation = -3979.757528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.42083 -41.98451 -39.86949 -38.67662 -36.15550 -35.09740 -34.59340 -33.60302 -32.32564 -31.41712 -30.26642 -28.55994 -27.54403 -26.27785 -25.92885 -25.02513 -23.67192 -22.24309 -21.67099 -21.20573 -20.25465 -19.45783 -18.84247 -18.35608 -17.69695 -17.35435 -17.27857 -16.65657 -16.46889 -16.27287 -15.81330 -15.71558 -15.45379 -15.24222 -15.06845 -14.55320 -14.22444 -14.09140 -13.87022 -13.65153 -13.52288 -13.05975 -13.01104 -12.87312 -12.70436 -12.47066 -12.35859 -12.25697 -12.11386 -12.04316 -11.82191 -11.59820 -11.43308 -11.24948 -10.96766 -10.84563 -10.72007 -10.65748 -10.03908 -9.13893 -8.88665 -7.84836 -5.20632 -0.52814 -0.32934 0.70623 0.87659 1.45231 1.46117 1.56101 1.98342 2.18098 2.39579 2.49008 2.83188 2.89776 3.07565 3.35433 3.55191 3.65948 3.78152 3.86288 4.00897 4.08193 4.18544 4.24293 4.34502 4.38224 4.40691 4.51441 4.56701 4.61064 4.61603 4.78014 4.90716 4.94062 5.03888 5.06073 5.08895 5.10685 5.20874 5.24635 5.36389 5.47853 5.53752 5.57628 5.62725 5.73289 6.03378 6.16819 6.49528 6.55077 7.02971 7.05241 7.75730 8.47653 9.27132 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.004142 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.516553 B = 6757.775636 C = 8558.799591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.230 4.230 8 H 0.088 0.912 9 N -0.599 5.599 10 C 0.189 3.811 11 C -0.129 4.129 12 C 0.134 3.866 13 N -0.671 5.671 14 C 0.597 3.403 15 O -0.547 6.547 16 C 0.059 3.941 17 C -0.232 4.232 18 C 0.246 3.754 19 N -0.490 5.490 20 C 0.190 3.810 21 C -0.186 4.186 22 C 0.129 3.871 23 N -0.308 5.308 24 N -0.302 5.302 25 C -0.111 4.111 26 C -0.103 4.103 27 C -0.111 4.111 28 C 0.148 3.852 29 H 0.028 0.972 30 H 0.244 0.756 31 H 0.006 0.994 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.405 0.595 36 H 0.169 0.831 37 H 0.232 0.768 38 H 0.224 0.776 39 H 0.203 0.797 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -7.166 -18.297 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.359 4.359 8 H 0.106 0.894 9 N -0.322 5.322 10 C 0.065 3.935 11 C -0.168 4.168 12 C 0.046 3.954 13 N -0.320 5.320 14 C 0.380 3.620 15 O -0.424 6.424 16 C -0.099 4.099 17 C -0.264 4.264 18 C 0.019 3.981 19 N -0.203 5.203 20 C 0.007 3.993 21 C -0.209 4.209 22 C -0.003 4.003 23 N -0.082 5.082 24 N -0.132 5.132 25 C -0.150 4.150 26 C -0.141 4.141 27 C -0.149 4.149 28 C 0.039 3.961 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.241 0.759 36 H 0.187 0.813 37 H 0.248 0.752 38 H 0.241 0.759 39 H 0.220 0.780 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.720 -7.487 -17.557 19.662 hybrid contribution 0.025 1.743 0.270 1.764 sum 4.745 -5.744 -17.287 18.824 Atomic orbital electron populations 1.70147 1.06404 1.25032 1.58414 1.25571 0.96351 1.00831 1.02761 0.85084 0.78447 0.79882 0.76383 1.18679 1.22324 1.22369 1.19423 0.90853 0.83144 1.42482 0.89423 1.43814 1.01904 1.00489 1.86009 1.21956 0.83313 0.90608 0.97616 1.22947 0.96718 0.96788 1.00388 1.21705 0.97112 0.95956 0.80581 1.45670 1.49292 1.29658 1.07343 1.17000 0.79441 0.83133 0.82450 1.90724 1.43553 1.26305 1.81858 1.22068 0.98068 0.94246 0.95556 1.20973 1.11427 1.06120 0.87888 1.20630 0.94324 0.90034 0.93153 1.68372 1.24707 1.29727 0.97482 1.24500 0.87779 0.86434 1.00592 1.22566 1.01069 1.02580 0.94706 1.23015 0.97075 0.92529 0.87684 1.47410 1.33071 1.20325 1.07399 1.78155 1.27420 1.20775 0.86885 1.21932 0.95906 0.93902 1.03246 1.22759 0.94494 0.93911 1.02917 1.21844 0.96229 0.96314 1.00525 1.21087 0.93967 0.85258 0.95752 0.95442 0.94628 0.97533 0.95581 0.92235 0.89177 0.75856 0.81338 0.75196 0.75895 0.77979 0.89260 0.91252 0.89178 0.91052 0.90676 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.32 10.55 21.65 0.23 -57.09 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.46 10.28 84.03 0.86 -11.60 16 8 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 9 N -0.60 -29.93 3.04 -665.59 -2.02 -31.95 16 10 C 0.19 9.64 5.37 87.52 0.47 10.11 16 11 C -0.13 -5.33 6.41 32.00 0.21 -5.12 16 12 C 0.13 5.06 0.42 4.32 0.00 5.06 16 13 N -0.67 -26.53 4.30 -422.49 -1.82 -28.35 16 14 C 0.60 23.64 7.23 86.79 0.63 24.26 16 15 O -0.55 -22.93 15.00 -3.88 -0.06 -22.99 16 16 C 0.06 2.19 7.05 42.02 0.30 2.49 16 17 C -0.23 -7.88 10.65 22.75 0.24 -7.64 16 18 C 0.25 7.23 7.90 133.00 1.05 8.28 16 19 N -0.49 -11.00 10.48 -192.59 -2.02 -13.02 16 20 C 0.19 2.00 11.27 85.31 0.96 2.96 16 21 C -0.19 -1.39 10.05 22.14 0.22 -1.16 16 22 C 0.13 2.11 11.30 83.29 0.94 3.05 16 23 N -0.31 -8.70 3.90 -192.51 -0.75 -9.45 16 24 N -0.30 -10.80 12.34 -48.79 -0.60 -11.40 16 25 C -0.11 -3.47 5.97 30.94 0.18 -3.29 16 26 C -0.10 -2.76 6.94 32.66 0.23 -2.53 16 27 C -0.11 -3.65 6.45 30.93 0.20 -3.45 16 28 C 0.15 5.96 2.61 46.46 0.12 6.08 16 29 H 0.03 1.13 7.99 -2.39 -0.02 1.11 16 30 H 0.24 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.01 0.36 7.98 -2.39 -0.02 0.34 16 32 H 0.03 1.51 7.05 -2.39 -0.02 1.49 16 33 H 0.06 2.53 7.79 -2.38 -0.02 2.51 16 34 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.41 17.22 7.64 -92.71 -0.71 16.51 16 36 H 0.17 5.44 8.06 -2.91 -0.02 5.42 16 37 H 0.23 -0.03 8.06 -2.92 -0.02 -0.05 16 38 H 0.22 -0.78 8.06 -2.91 -0.02 -0.81 16 39 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.07 2.32 6.20 -2.39 -0.01 2.31 16 42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 1.95 7.52 -2.39 -0.02 1.93 16 Total: -1.00 -78.99 367.16 2.39 -76.60 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.32 Total: 25.83 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 7.08 Total: 24.49 kcal Atomic # 7 Polarization: -144.28 SS G_CDS: -6.98 Total: -151.27 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.99 2.39 -76.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992367815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.722 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds