Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00081 * 2 1 4 4 H 1.48507 * 109.46679 * 270.00093 * 3 2 1 5 5 H 1.48499 * 109.47212 * 29.99695 * 3 2 1 6 6 H 1.48495 * 109.47279 * 150.00255 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99829 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49634 * 324.93501 * 10 9 7 12 12 C 1.53037 * 109.52192 * 204.85443 * 10 9 7 13 13 C 1.53044 * 109.53800 * 178.66776 * 12 10 9 14 14 C 1.52762 * 109.38085 * 61.23853 * 13 12 10 15 15 N 1.46918 * 109.01285 * 305.58837 * 14 13 12 16 16 C 1.34777 * 120.63644 * 233.58534 * 15 14 13 17 17 O 1.21518 * 120.00170 * 179.89341 * 16 15 14 18 18 C 1.48160 * 119.99488 * 359.89327 * 16 15 14 19 19 C 1.39221 * 119.68596 * 158.30508 * 18 16 15 20 20 C 1.38718 * 119.18988 * 179.69865 * 19 18 16 21 21 C 1.38402 * 118.55570 * 0.28545 * 20 19 18 22 22 C 1.39261 * 119.30040 * 359.97438 * 21 20 19 23 23 N 1.39823 * 119.61364 * 180.02562 * 22 21 20 24 24 C 1.37185 * 126.48541 * 184.71686 * 23 22 21 25 25 C 1.34612 * 106.83002 * 179.90299 * 24 23 22 26 26 N 1.34158 * 108.21605 * 0.36175 * 25 24 23 27 27 C 1.30480 * 109.37201 * 359.77036 * 26 25 24 28 28 N 1.31966 * 120.76157 * 0.02562 * 22 21 20 29 29 C 1.46937 * 118.73639 * 53.30841 * 15 14 13 30 30 H 0.96998 * 119.99682 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00240 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46549 * 298.68953 * 12 10 9 33 33 H 1.09001 * 109.46371 * 58.65003 * 12 10 9 34 34 H 1.09003 * 109.50063 * 181.31732 * 13 12 10 35 35 H 1.08997 * 109.49679 * 301.38209 * 13 12 10 36 36 H 1.09000 * 109.50864 * 185.70485 * 14 13 12 37 37 H 1.08999 * 109.43229 * 65.42764 * 14 13 12 38 38 H 1.08006 * 120.40459 * 359.97438 * 19 18 16 39 39 H 1.08006 * 120.71886 * 180.30170 * 20 19 18 40 40 H 1.08000 * 120.34796 * 179.97438 * 21 20 19 41 41 H 1.07999 * 126.58007 * 359.97438 * 24 23 22 42 42 H 1.07999 * 125.89352 * 180.10004 * 25 24 23 43 43 H 1.08005 * 125.71700 * 179.97438 * 27 26 25 44 44 H 1.09000 * 109.58184 * 66.43169 * 29 15 14 45 45 H 1.09001 * 109.58541 * 186.85504 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5659 -3.2058 0.5925 12 6 5.5015 -2.2587 0.6066 13 6 6.2548 -3.5906 0.6385 14 6 6.4228 -4.1121 -0.7875 15 7 5.1038 -4.1798 -1.4309 16 6 4.6751 -5.3239 -1.9999 17 8 3.5811 -5.3675 -2.5272 18 6 5.5376 -6.5284 -1.9823 19 6 4.9662 -7.7880 -2.1410 20 6 5.7842 -8.9083 -2.1292 21 6 7.1455 -8.7317 -1.9531 22 6 7.6508 -7.4437 -1.7946 23 7 9.0251 -7.2576 -1.6168 24 6 9.6608 -6.0697 -1.3588 25 6 10.9748 -6.3445 -1.2587 26 7 11.1444 -7.6604 -1.4572 27 6 9.9848 -8.2185 -1.6727 28 7 6.8474 -6.3968 -1.8103 29 6 4.2582 -2.9781 -1.4369 30 1 -0.4849 0.8401 -0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 6.0562 -1.5422 0.0008 33 1 5.4006 -1.8743 1.6216 34 1 7.2353 -3.4433 1.0912 35 1 5.6887 -4.3147 1.2243 36 1 6.8680 -5.1067 -0.7611 37 1 7.0683 -3.4354 -1.3474 38 1 3.8996 -7.8913 -2.2761 39 1 5.3677 -9.8969 -2.2550 40 1 7.8090 -9.5837 -1.9388 41 1 9.1961 -5.1004 -1.2546 42 1 11.7579 -5.6284 -1.0579 43 1 9.8160 -9.2681 -1.8638 44 1 4.7236 -2.2071 -2.0509 45 1 3.2756 -3.2248 -1.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999554414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 114.415989 kcal Electronic energy + Delta-G solvation = -29424.414222 eV Core-core repulsion = 25444.756078 eV Total energy + Delta-G solvation = -3979.658144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.80174 -41.09176 -39.43404 -37.49134 -34.80515 -34.66038 -33.41085 -32.26183 -31.35912 -30.67488 -29.80499 -28.80455 -26.18032 -24.65413 -24.30096 -23.78712 -21.90107 -21.73972 -21.45454 -20.62555 -19.72017 -18.51214 -17.65477 -17.55328 -16.82774 -16.41740 -16.28267 -15.77781 -15.35241 -14.83495 -14.70980 -14.50894 -14.29636 -14.20529 -13.96905 -13.88926 -13.75306 -13.65619 -13.17688 -12.77370 -12.72517 -12.54114 -12.46396 -11.78544 -11.27356 -11.22437 -10.97621 -10.93806 -10.73509 -10.63493 -10.54672 -10.31570 -10.29901 -9.93703 -9.62592 -9.40117 -9.29680 -9.14003 -8.91452 -8.45787 -7.33201 -5.79898 -3.17512 0.01886 0.34077 1.69889 1.89935 2.56450 2.71491 2.88697 3.30823 3.35044 3.37511 3.43244 3.63487 3.94138 4.16636 4.24326 4.32946 4.45611 4.55605 4.68817 4.86549 4.94385 4.98412 5.09603 5.15301 5.20419 5.33239 5.38689 5.44874 5.47495 5.66228 5.68003 5.70997 5.79144 5.89041 5.94323 6.04496 6.08673 6.22281 6.25752 6.34699 6.59606 6.63690 6.66905 6.84649 7.03717 7.47739 7.53423 7.95204 8.11494 8.38749 9.15684 9.87411 10.05847 11.38014 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002786 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.092278 B =10046.419461 C =11316.498931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.174 3.826 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.131 4.131 14 C 0.076 3.924 15 N -0.580 5.580 16 C 0.562 3.438 17 O -0.524 6.524 18 C 0.126 3.874 19 C -0.122 4.122 20 C -0.048 4.048 21 C -0.163 4.163 22 C 0.337 3.663 23 N -0.410 5.410 24 C -0.025 4.025 25 C -0.028 4.028 26 N -0.477 5.477 27 C 0.192 3.808 28 N -0.464 5.464 29 C 0.090 3.910 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.183 0.817 42 H 0.177 0.823 43 H 0.212 0.788 44 H 0.065 0.935 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.608 -19.672 -2.773 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.170 4.170 14 C -0.047 4.047 15 N -0.311 5.311 16 C 0.346 3.654 17 O -0.400 6.400 18 C -0.012 4.012 19 C -0.143 4.143 20 C -0.074 4.074 21 C -0.185 4.185 22 C 0.108 3.892 23 N -0.093 5.093 24 C -0.155 4.155 25 C -0.173 4.173 26 N -0.194 5.194 27 C -0.089 4.089 28 N -0.179 5.179 29 C -0.034 4.034 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.166 0.834 41 H 0.201 0.799 42 H 0.194 0.806 43 H 0.228 0.772 44 H 0.083 0.917 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.767 -19.244 -2.922 28.463 hybrid contribution -0.471 1.059 -0.106 1.164 sum 20.295 -18.185 -3.029 27.418 Atomic orbital electron populations 1.69704 1.05125 1.25897 1.56996 1.24686 0.95229 0.97223 1.01718 0.86559 0.79214 0.84977 0.77817 1.21012 1.21684 1.20279 1.19092 0.80348 0.94865 1.43585 0.89050 1.42728 1.04149 1.01695 1.89802 1.20438 0.91057 0.89531 0.92631 0.92284 1.21883 0.96638 0.96611 1.01727 1.21845 1.00626 0.97857 0.96675 1.22722 0.83929 1.05469 0.92582 1.48109 1.18375 1.10773 1.53859 1.17785 0.85383 0.82159 0.80028 1.90849 1.20458 1.83294 1.45400 1.21211 0.88144 0.94890 0.97005 1.22232 1.03061 0.91257 0.97739 1.21559 0.91959 1.00014 0.93858 1.21743 0.97194 0.95940 1.03626 1.18285 0.83159 0.90291 0.97469 1.43124 1.03961 1.09714 1.52515 1.23024 0.93721 0.90890 1.07839 1.22427 0.94896 0.92954 1.07021 1.70345 1.23578 1.08079 1.17422 1.25332 0.81935 0.96292 1.05335 1.67064 1.04971 1.31250 1.14654 1.22836 0.95633 0.84056 1.00923 0.92973 0.80416 0.92122 0.91407 0.90994 0.91863 0.85309 0.91705 0.82375 0.82662 0.83434 0.79949 0.80557 0.77204 0.91719 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.87 27.74 -169.99 -4.71 17.15 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.99 10.41 -15.06 -0.16 -7.14 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.74 -17.21 4.93 -53.31 -0.26 -17.47 16 10 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 11 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 12 C -0.13 -1.93 5.36 -26.69 -0.14 -2.07 16 13 C -0.13 -1.56 6.07 -26.83 -0.16 -1.72 16 14 C 0.08 0.91 5.96 -3.94 -0.02 0.88 16 15 N -0.58 -8.84 2.98 -174.02 -0.52 -9.36 16 16 C 0.56 8.75 7.62 -12.19 -0.09 8.66 16 17 O -0.52 -9.93 15.94 5.35 0.09 -9.85 16 18 C 0.13 1.48 6.46 -83.03 -0.54 0.95 16 19 C -0.12 -1.09 9.62 -39.04 -0.38 -1.47 16 20 C -0.05 -0.27 10.16 -39.34 -0.40 -0.67 16 21 C -0.16 -0.93 9.51 -39.14 -0.37 -1.30 16 22 C 0.34 2.90 7.50 -154.53 -1.16 1.74 16 23 N -0.41 -3.48 2.98 -63.81 -0.19 -3.67 16 24 C -0.03 -0.22 11.17 -16.44 -0.18 -0.40 16 25 C -0.03 -0.25 11.85 -17.82 -0.21 -0.46 16 26 N -0.48 -4.74 11.24 -14.46 -0.16 -4.90 16 27 C 0.19 1.46 11.89 -89.59 -1.07 0.40 16 28 N -0.46 -4.88 5.89 -8.85 -0.05 -4.93 16 29 C 0.09 1.63 6.02 -3.71 -0.02 1.61 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.13 1.43 3.90 -79.46 -0.31 1.12 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.16 1.37 7.79 -52.48 -0.41 0.96 16 39 H 0.16 0.34 8.06 -52.48 -0.42 -0.09 16 40 H 0.15 0.35 6.77 -52.49 -0.36 0.00 16 41 H 0.18 1.37 7.98 -52.49 -0.42 0.95 16 42 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.21 0.72 7.06 -52.48 -0.37 0.35 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.10 2.08 7.00 -51.93 -0.36 1.72 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -35.63 369.98 -10.51 -46.15 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.85 Total: 7.52 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -5.20 Total: 2.22 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.41 Total: -68.77 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -10.51 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999554414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.564 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds